Wall clock time and date at job start Fri Apr 10 2020 18:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47076 * 2 1 4 4 C 1.50697 * 109.47025 * 240.00473 * 2 1 3 5 5 H 1.08003 * 119.99987 * 239.99856 * 4 2 1 6 6 C 1.37879 * 120.00159 * 59.99632 * 4 2 1 7 7 N 1.31513 * 120.00102 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00021 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47178 * 0.02562 * 8 6 4 10 10 H 1.48510 * 109.47050 * 120.00018 * 8 6 4 11 11 H 1.48491 * 109.47189 * 239.99994 * 8 6 4 12 12 N 1.46496 * 109.47264 * 120.00491 * 2 1 3 13 13 C 1.34777 * 119.99850 * 274.99651 * 12 2 1 14 14 O 1.21374 * 120.00074 * 0.02562 * 13 12 2 15 15 C 1.49304 * 120.00249 * 180.27516 * 13 12 2 16 16 O 1.21394 * 119.99581 * 359.72875 * 15 13 12 17 17 N 1.34771 * 120.00455 * 179.72958 * 15 13 12 18 18 C 1.39198 * 120.00358 * 174.10688 * 17 15 13 19 19 C 1.35472 * 126.33646 * 151.14674 * 18 17 15 20 20 C 1.40320 * 108.00705 * 180.09653 * 19 18 17 21 21 N 1.30198 * 108.43460 * 359.87967 * 20 19 18 22 22 N 1.36095 * 126.33697 * 330.84209 * 18 17 15 23 23 C 1.46494 * 126.06289 * 359.92315 * 22 18 17 24 24 C 1.50991 * 123.44259 * 179.70256 * 20 19 18 25 25 C 1.53367 * 108.21547 * 343.42010 * 24 20 19 26 26 C 1.53031 * 109.74054 * 50.67750 * 25 24 20 27 27 C 1.50860 * 128.28277 * 0.25452 * 19 18 17 28 28 H 1.08998 * 109.47076 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46941 * 299.99558 * 1 2 3 30 30 H 1.08993 * 109.47410 * 59.99580 * 1 2 3 31 31 H 0.96999 * 120.00551 * 179.97438 * 7 6 4 32 32 H 0.97001 * 120.00595 * 94.99610 * 12 2 1 33 33 H 0.97009 * 119.99819 * 354.10435 * 17 15 13 34 34 H 1.09000 * 109.47383 * 91.93120 * 23 22 18 35 35 H 1.09001 * 109.47392 * 211.93125 * 23 22 18 36 36 H 1.09002 * 109.47223 * 331.92907 * 23 22 18 37 37 H 1.09001 * 109.71529 * 103.10202 * 24 20 19 38 38 H 1.08999 * 109.71285 * 223.69492 * 24 20 19 39 39 H 1.08994 * 109.42410 * 170.75838 * 25 24 20 40 40 H 1.09001 * 109.42302 * 290.59755 * 25 24 20 41 41 H 1.09003 * 109.43158 * 48.36382 * 26 25 24 42 42 H 1.08990 * 109.43532 * 168.22802 * 26 25 24 43 43 H 1.09006 * 109.71669 * 283.08615 * 27 19 18 44 44 H 1.09003 * 109.72117 * 43.73077 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3212 -1.1201 -4.0080 9 1 3.1453 -2.2874 -3.6040 10 1 1.1658 -1.5865 -4.8162 11 1 3.1464 -0.1872 -4.8165 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8581 1.1592 2.4118 15 6 2.6507 -0.7207 3.5746 16 8 2.9394 -1.8985 3.5200 17 7 2.7846 -0.0471 4.7342 18 6 3.1359 -0.7265 5.8972 19 6 3.8182 -0.2158 6.9502 20 6 3.9623 -1.2315 7.9076 21 7 3.3894 -2.3091 7.4540 22 7 2.8524 -2.0252 6.1894 23 6 2.1190 -2.9613 5.3339 24 6 4.6785 -1.0397 9.2229 25 6 5.5289 0.2328 9.1246 26 6 4.6688 1.3911 8.6143 27 6 4.3522 1.1840 7.1278 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.7093 1.1620 -3.4843 32 1 2.2490 -1.6319 1.1525 33 1 2.6363 0.9112 4.7583 34 1 2.8230 -3.5093 4.7078 35 1 1.5634 -3.6631 5.9559 36 1 1.4247 -2.4080 4.7014 37 1 3.9497 -0.9337 10.0265 38 1 5.3210 -1.8978 9.4202 39 1 5.9244 0.4814 10.1094 40 1 6.3557 0.0639 8.4347 41 1 3.7387 1.4294 9.1813 42 1 5.2099 2.3285 8.7426 43 1 5.2600 1.3089 6.5374 44 1 3.6022 1.9071 6.8074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602037360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:56 Heat of formation + Delta-G solvation = -11.534186 kcal Electronic energy + Delta-G solvation = -27027.890764 eV Core-core repulsion = 23174.193151 eV Total energy + Delta-G solvation = -3853.697613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.03376 -41.60021 -39.82198 -37.54291 -37.18139 -36.27207 -34.39376 -33.45996 -32.26434 -31.15018 -29.30360 -28.01606 -27.40537 -26.43695 -24.15754 -23.28382 -22.86629 -21.63856 -21.09257 -20.45852 -19.50613 -18.79481 -18.23417 -17.50085 -17.42608 -17.05648 -16.58686 -16.30057 -16.11006 -15.41613 -15.29551 -15.13796 -14.82692 -14.67557 -14.48092 -14.18919 -13.87365 -13.75404 -13.61112 -13.38492 -13.10372 -12.94983 -12.90677 -12.77509 -12.46723 -12.32680 -12.28482 -12.14479 -11.96705 -11.57032 -11.50071 -11.17475 -11.12737 -10.76830 -10.64795 -10.04771 -9.90237 -9.14027 -8.22728 -6.39820 -0.09090 0.81858 0.95024 1.42076 1.43209 1.46633 1.56921 1.64371 2.05953 2.35968 2.58421 3.08612 3.28077 3.37565 3.89893 4.03153 4.09982 4.15104 4.31338 4.33324 4.44491 4.55397 4.65292 4.67928 4.69628 4.72905 4.83391 4.85772 4.98779 4.99815 5.13149 5.25531 5.25922 5.27487 5.35276 5.37586 5.54056 5.56731 5.64237 5.70950 5.78617 5.91481 6.01321 6.32385 6.59677 6.66344 6.67623 6.99533 7.32436 8.83581 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026223 B = 0.002655 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.505614 B =10545.108715 C =10931.221611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.269 3.731 3 H 0.017 0.983 4 C -0.552 4.552 5 H 0.070 0.930 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.970 3.030 9 H -0.264 1.264 10 H -0.277 1.277 11 H -0.281 1.281 12 N -0.666 5.666 13 C 0.501 3.499 14 O -0.552 6.552 15 C 0.511 3.489 16 O -0.505 6.505 17 N -0.609 5.609 18 C 0.294 3.706 19 C -0.252 4.252 20 C 0.087 3.913 21 N -0.307 5.307 22 N -0.385 5.385 23 C 0.122 3.878 24 C -0.036 4.036 25 C -0.112 4.112 26 C -0.113 4.113 27 C -0.042 4.042 28 H 0.041 0.959 29 H 0.021 0.979 30 H 0.073 0.927 31 H 0.268 0.732 32 H 0.411 0.589 33 H 0.442 0.558 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.212 -1.563 22.363 23.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.167 3.833 3 H 0.035 0.965 4 C -0.590 4.590 5 H 0.089 0.911 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.795 3.205 9 H -0.188 1.188 10 H -0.203 1.203 11 H -0.207 1.207 12 N -0.316 5.316 13 C 0.280 3.720 14 O -0.432 6.432 15 C 0.294 3.706 16 O -0.379 6.379 17 N -0.261 5.261 18 C 0.075 3.925 19 C -0.266 4.266 20 C -0.080 4.080 21 N -0.130 5.130 22 N -0.171 5.171 23 C -0.019 4.019 24 C -0.075 4.075 25 C -0.150 4.150 26 C -0.150 4.150 27 C -0.080 4.080 28 H 0.060 0.940 29 H 0.040 0.960 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.247 0.753 33 H 0.285 0.715 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.702 -2.773 22.229 23.115 hybrid contribution 0.022 0.393 -1.644 1.690 sum 5.724 -2.380 20.585 21.498 Atomic orbital electron populations 1.21933 0.97341 0.99900 1.00398 1.18637 0.91739 0.92436 0.80508 0.96518 1.21507 1.33007 1.13766 0.90692 0.91149 1.25699 0.94735 0.95531 1.02029 1.70013 1.36579 1.23563 1.24824 0.85319 0.78154 0.78505 0.78518 1.18844 1.20293 1.20732 1.46249 1.61647 1.14866 1.08810 1.19840 0.80423 0.86983 0.84754 1.90741 1.51321 1.16137 1.84980 1.20437 0.78821 0.86793 0.84580 1.90850 1.47177 1.15509 1.84359 1.42369 1.66660 1.13273 1.03836 1.17696 0.99977 0.86082 0.88735 1.19872 1.10869 1.00620 0.95249 1.22749 0.97293 0.89561 0.98445 1.77082 1.18987 1.23641 0.93293 1.48908 1.45637 1.08095 1.14502 1.22041 0.95662 0.92220 0.91959 1.20334 0.98087 0.99991 0.89113 1.21573 0.97536 0.93050 1.02847 1.21550 1.00614 0.99081 0.93765 1.20111 1.00174 0.89094 0.98644 0.94035 0.95978 0.90820 0.92281 0.75292 0.71544 0.89920 0.89051 0.90744 0.88378 0.89368 0.88525 0.92115 0.91450 0.89589 0.91182 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.52 9.26 71.98 0.67 -5.85 16 2 C 0.27 13.22 2.56 44.25 0.11 13.34 16 3 H 0.02 0.96 7.58 -2.39 -0.02 0.94 16 4 C -0.55 -28.35 8.73 25.60 0.22 -28.12 16 5 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 6 C 0.02 1.09 5.30 84.66 0.45 1.54 16 7 N -0.91 -50.00 11.32 21.45 0.24 -49.76 16 8 Si 0.97 41.06 29.54 68.60 2.03 43.09 16 9 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 10 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 12 N -0.67 -27.11 5.06 -447.58 -2.27 -29.38 16 13 C 0.50 18.92 7.85 87.22 0.68 19.61 16 14 O -0.55 -23.36 16.15 -3.32 -0.05 -23.42 16 15 C 0.51 16.18 6.89 87.22 0.60 16.79 16 16 O -0.51 -16.56 11.47 -3.38 -0.04 -16.59 16 17 N -0.61 -16.52 5.38 -309.95 -1.67 -18.19 16 18 C 0.29 8.16 7.30 131.00 0.96 9.11 16 19 C -0.25 -5.98 5.91 -19.95 -0.12 -6.10 16 20 C 0.09 2.05 7.09 43.40 0.31 2.36 16 21 N -0.31 -8.79 12.55 -47.17 -0.59 -9.38 16 22 N -0.38 -11.24 4.00 -366.55 -1.47 -12.70 16 23 C 0.12 3.18 9.24 127.77 1.18 4.36 16 24 C -0.04 -0.53 6.31 30.06 0.19 -0.34 16 25 C -0.11 -1.24 5.86 30.73 0.18 -1.06 16 26 C -0.11 -1.33 5.87 30.74 0.18 -1.15 16 27 C -0.04 -0.71 6.27 30.03 0.19 -0.52 16 28 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 31 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 32 H 0.41 15.28 8.01 -92.71 -0.74 14.54 16 33 H 0.44 10.55 8.31 -92.70 -0.77 9.78 16 34 H 0.08 2.30 6.88 -2.39 -0.02 2.28 16 35 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 1.99 6.18 -2.39 -0.01 1.97 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 41 H 0.07 0.79 8.10 -2.39 -0.02 0.77 16 42 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 44 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -63.80 359.78 1.53 -62.27 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: -0.46 Total: 30.09 kcal Atomic # 6 Polarization: 18.15 SS G_CDS: 5.80 Total: 23.96 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -5.75 Total: -119.40 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -0.09 Total: -40.01 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -63.80 1.53 -62.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602037360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.737 kcal (2) G-P(sol) polarization free energy of solvation -63.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds