Wall clock time and date at job start Fri Apr 10 2020 18:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00192 * 2 1 4 4 C 1.52995 * 109.47053 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47284 * 65.00279 * 4 3 2 6 6 C 1.46498 * 119.99618 * 275.00066 * 5 4 3 7 7 C 1.50700 * 109.46852 * 280.05770 * 6 5 4 8 8 H 1.07999 * 120.00310 * 4.01955 * 7 6 5 9 9 C 1.37881 * 119.99755 * 184.00947 * 7 6 5 10 10 N 1.31516 * 119.99849 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99952 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.46928 * 90.00339 * 11 9 7 13 13 H 1.48504 * 109.47058 * 209.99692 * 11 9 7 14 14 H 1.48496 * 109.47072 * 330.00191 * 11 9 7 15 15 S 1.65594 * 119.99973 * 94.99672 * 5 4 3 16 16 O 1.42101 * 106.40345 * 330.24638 * 15 5 4 17 17 O 1.42104 * 106.40438 * 197.32680 * 15 5 4 18 18 N 1.65606 * 107.21732 * 83.78696 * 15 5 4 19 19 C 1.46498 * 119.99730 * 65.55721 * 18 15 5 20 20 C 1.53008 * 109.46681 * 165.49639 * 19 18 15 21 21 H 1.08993 * 109.46992 * 304.99965 * 20 19 18 22 22 C 1.53002 * 109.46942 * 64.99797 * 20 19 18 23 23 C 1.52996 * 109.46740 * 184.99801 * 20 19 18 24 24 C 1.52998 * 117.49987 * 128.62171 * 23 20 19 25 25 C 1.52996 * 59.99995 * 252.50731 * 24 23 20 26 26 H 1.09002 * 109.47162 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46872 * 299.99952 * 1 2 3 28 28 H 1.08999 * 109.47296 * 59.99798 * 1 2 3 29 29 H 1.09005 * 109.46550 * 59.99808 * 3 2 1 30 30 H 1.08995 * 109.47039 * 300.00685 * 3 2 1 31 31 H 1.09003 * 109.47380 * 304.99653 * 4 3 2 32 32 H 1.09001 * 109.46745 * 185.00615 * 4 3 2 33 33 H 1.08997 * 109.47526 * 40.06638 * 6 5 4 34 34 H 1.09003 * 109.46585 * 160.06842 * 6 5 4 35 35 H 0.96997 * 119.99886 * 179.97438 * 10 9 7 36 36 H 0.97000 * 119.99550 * 245.55092 * 18 15 5 37 37 H 1.08992 * 109.47238 * 45.49588 * 19 18 15 38 38 H 1.09000 * 109.46920 * 285.49182 * 19 18 15 39 39 H 1.09003 * 109.47093 * 60.00230 * 22 20 19 40 40 H 1.09003 * 109.47308 * 299.99536 * 22 20 19 41 41 H 1.08998 * 109.46731 * 179.97438 * 22 20 19 42 42 H 1.09001 * 115.54989 * 274.32823 * 23 20 19 43 43 H 1.08997 * 117.49816 * 0.02562 * 24 23 20 44 44 H 1.09007 * 117.49751 * 145.01608 * 24 23 20 45 45 H 1.08997 * 117.49925 * 252.50968 * 25 24 23 46 46 H 1.09003 * 117.49749 * 107.48614 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0014 -0.8955 -1.3758 7 6 5.2425 -1.4354 -0.7129 8 1 5.9095 -0.7666 -0.1893 9 6 5.5262 -2.7833 -0.7747 10 7 6.6090 -3.2545 -0.1957 11 14 4.3727 -3.9400 -1.6807 12 1 4.7888 -4.0404 -3.1027 13 1 4.4267 -5.2848 -1.0530 14 1 2.9858 -3.4144 -1.6066 15 16 4.4474 1.5121 -2.5243 16 8 3.7075 2.7207 -2.4197 17 8 4.4185 0.6803 -3.6762 18 7 6.0351 1.9127 -2.2766 19 6 7.0655 0.8717 -2.3007 20 6 8.4458 1.5229 -2.4098 21 1 8.4703 2.1788 -3.2799 22 6 8.7253 2.3402 -1.1469 23 6 9.5119 0.4359 -2.5603 24 6 10.5020 0.5730 -3.7186 25 6 9.4068 -0.4940 -3.7706 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8508 0.5685 0.8427 32 1 3.9785 2.1765 0.0903 33 1 3.1193 -1.3165 -0.8934 34 1 4.0045 -1.1698 -2.4307 35 1 6.8084 -4.2028 -0.2389 36 1 6.2826 2.8367 -2.1157 37 1 6.9028 0.2191 -3.1584 38 1 7.0117 0.2859 -1.3830 39 1 8.7009 1.6841 -0.2767 40 1 7.9658 3.1146 -1.0397 41 1 9.7088 2.8037 -1.2245 42 1 9.8831 0.0092 -1.6285 43 1 10.3941 1.4379 -4.3732 44 1 11.5249 0.2366 -3.5490 45 1 9.7091 -1.5324 -3.6352 46 1 8.5780 -0.3314 -4.4597 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619708173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:25 Heat of formation + Delta-G solvation = -103.835130 kcal Electronic energy + Delta-G solvation = -27235.269235 eV Core-core repulsion = 23480.720353 eV Total energy + Delta-G solvation = -3754.548882 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.17867 -37.79999 -36.67015 -35.45137 -35.24415 -34.87356 -32.46438 -31.10445 -29.75224 -27.15978 -25.84092 -25.76107 -22.64415 -22.54975 -21.97889 -21.57439 -19.72963 -18.73735 -17.41212 -16.95037 -16.76046 -16.02600 -15.76034 -15.60178 -15.23937 -14.90013 -14.54240 -14.30429 -14.08854 -13.80346 -13.58117 -12.78970 -12.46507 -12.40881 -12.37106 -12.21520 -12.04892 -11.80246 -11.70909 -11.53226 -11.35200 -11.30166 -11.22481 -11.15967 -10.99109 -10.85982 -10.66060 -10.52492 -10.27291 -10.13928 -9.94655 -9.65384 -9.53802 -9.34558 -8.84677 -8.54767 -8.03247 -6.08243 -4.06216 1.26057 3.33666 3.40631 3.47635 3.50714 4.04536 4.11288 4.12853 4.44734 4.81468 4.98942 5.10426 5.16437 5.25140 5.30939 5.35199 5.38404 5.48364 5.51248 5.57591 5.61725 5.65708 5.75988 5.78284 5.83793 5.85967 5.89970 6.12700 6.16814 6.23556 6.28168 6.31095 6.35489 6.38934 6.50947 6.64879 6.80705 7.08848 7.24914 7.36651 7.50351 7.56587 7.69340 8.49243 8.93495 9.54361 11.03550 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011037 B = 0.006100 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.275958 B = 4589.387400 C = 6188.796271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.373 6.373 3 C 0.042 3.958 4 C 0.137 3.863 5 N -0.979 5.979 6 C 0.213 3.787 7 C -0.534 4.534 8 H 0.082 0.918 9 C 0.078 3.922 10 N -0.894 5.894 11 Si 0.864 3.136 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.261 1.261 15 S 2.785 3.215 16 O -1.003 7.003 17 O -0.981 6.981 18 N -1.130 6.130 19 C 0.122 3.878 20 C -0.065 4.065 21 H 0.069 0.931 22 C -0.143 4.143 23 C -0.139 4.139 24 C -0.185 4.185 25 C -0.175 4.175 26 H 0.082 0.918 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.040 0.960 35 H 0.263 0.737 36 H 0.404 0.596 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.108 0.892 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.046 10.291 -0.949 10.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.291 6.291 3 C -0.036 4.036 4 C 0.010 3.990 5 N -0.820 5.820 6 C 0.089 3.911 7 C -0.573 4.573 8 H 0.099 0.901 9 C -0.124 4.124 10 N -0.533 5.533 11 Si 0.691 3.309 12 H -0.199 1.199 13 H -0.213 1.213 14 H -0.186 1.186 15 S 2.793 3.207 16 O -0.987 6.987 17 O -0.965 6.965 18 N -0.889 5.889 19 C -0.004 4.004 20 C -0.085 4.085 21 H 0.087 0.913 22 C -0.200 4.200 23 C -0.158 4.158 24 C -0.222 4.222 25 C -0.212 4.212 26 H 0.100 0.900 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.237 0.763 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.126 0.874 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.114 0.886 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.432 9.992 -1.705 10.146 hybrid contribution -0.345 -0.284 0.006 0.447 sum -0.777 9.707 -1.699 9.886 Atomic orbital electron populations 1.22708 0.82354 1.02350 0.99286 1.88066 1.18467 1.27384 1.95201 1.23142 0.95415 0.85010 1.00078 1.21068 0.91155 0.97780 0.88963 1.57406 1.78890 1.18239 1.27421 1.19677 0.99058 0.74379 0.97951 1.21422 1.07069 0.93759 1.35054 0.90054 1.24780 0.94818 0.97968 0.94884 1.69886 1.25256 1.14111 1.44007 0.87012 0.82711 0.80610 0.80531 1.19941 1.21328 1.18570 1.01721 0.72727 0.72336 0.73955 1.93543 1.70181 1.47289 1.87717 1.93561 1.86542 1.68876 1.47498 1.55961 1.26045 1.16378 1.90545 1.21522 0.85274 0.88779 1.04818 1.20888 0.93393 0.95531 0.98647 0.91277 1.21799 1.00733 0.99760 0.97735 1.22224 0.99420 1.00173 0.94011 1.22993 0.95306 1.01646 1.02301 1.22938 1.00767 0.96144 1.01312 0.89983 0.94618 0.94567 0.93045 0.93010 0.88755 0.90248 0.93045 0.94231 0.92716 0.76288 0.90573 0.88602 0.91891 0.92849 0.92905 0.87372 0.89283 0.89269 0.88644 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.54 8.99 -35.23 -0.32 -6.86 16 3 C 0.04 0.66 6.28 37.15 0.23 0.89 16 4 C 0.14 2.30 5.74 -4.04 -0.02 2.28 16 5 N -0.98 -19.43 2.83 -115.66 -0.33 -19.76 16 6 C 0.21 4.98 4.39 -5.19 -0.02 4.96 16 7 C -0.53 -13.73 9.06 -34.44 -0.31 -14.05 16 8 H 0.08 2.17 6.71 -52.49 -0.35 1.82 16 9 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 10 N -0.89 -25.49 13.96 55.43 0.77 -24.72 16 11 Si 0.86 21.12 27.39 -169.99 -4.66 16.46 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.26 -6.24 6.66 56.52 0.38 -5.86 16 15 S 2.78 53.45 6.07 -107.50 -0.65 52.80 16 16 O -1.00 -19.52 17.17 -57.17 -0.98 -20.50 16 17 O -0.98 -22.21 16.00 -57.17 -0.92 -23.12 16 18 N -1.13 -18.04 5.93 -10.61 -0.06 -18.11 16 19 C 0.12 2.08 5.51 -4.04 -0.02 2.05 16 20 C -0.06 -0.89 2.64 -90.62 -0.24 -1.13 16 21 H 0.07 0.89 7.90 -51.93 -0.41 0.48 16 22 C -0.14 -1.73 9.05 37.16 0.34 -1.40 16 23 C -0.14 -1.96 5.15 -90.62 -0.47 -2.42 16 24 C -0.19 -2.24 10.18 -26.73 -0.27 -2.51 16 25 C -0.17 -2.51 9.67 -26.73 -0.26 -2.77 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.83 7.97 -51.93 -0.41 0.42 16 31 H 0.09 1.64 8.09 -51.93 -0.42 1.22 16 32 H 0.08 1.11 7.78 -51.93 -0.40 0.70 16 33 H 0.05 1.24 5.90 -51.93 -0.31 0.94 16 34 H 0.04 0.98 5.98 -51.93 -0.31 0.67 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.40 5.29 7.42 -34.47 -0.26 5.03 16 37 H 0.08 1.45 6.73 -51.93 -0.35 1.10 16 38 H 0.10 1.88 5.85 -51.93 -0.30 1.58 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.59 6.91 -51.93 -0.36 0.23 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.11 1.58 8.11 -51.93 -0.42 1.16 16 43 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 44 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 45 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 46 H 0.10 1.42 7.58 -51.93 -0.39 1.03 16 LS Contribution 377.81 15.07 5.69 5.69 Total: -1.00 -31.61 377.81 -9.14 -40.74 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -7.66 Total: 7.91 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -0.03 Total: -10.55 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: 0.38 Total: -62.58 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -2.21 Total: -50.48 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.66 Total: 16.46 kcal Atomic # 16 Polarization: 53.45 SS G_CDS: -0.65 Total: 52.80 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.61 -9.14 -40.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619708173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.090 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds