Wall clock time and date at job start Fri Apr 10 2020 18:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00192 * 2 1 4 4 C 1.52995 * 109.47053 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47284 * 65.00279 * 4 3 2 6 6 C 1.46498 * 119.99618 * 275.00066 * 5 4 3 7 7 C 1.50700 * 109.46852 * 280.05770 * 6 5 4 8 8 H 1.07999 * 120.00310 * 4.01955 * 7 6 5 9 9 C 1.37881 * 119.99755 * 184.00947 * 7 6 5 10 10 N 1.31516 * 119.99849 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99952 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.46928 * 90.00339 * 11 9 7 13 13 H 1.48504 * 109.47058 * 209.99692 * 11 9 7 14 14 H 1.48496 * 109.47072 * 330.00191 * 11 9 7 15 15 S 1.65594 * 119.99973 * 94.99672 * 5 4 3 16 16 O 1.42101 * 106.40345 * 330.24638 * 15 5 4 17 17 O 1.42104 * 106.40438 * 197.32680 * 15 5 4 18 18 N 1.65606 * 107.21732 * 83.78696 * 15 5 4 19 19 C 1.46498 * 119.99730 * 65.55721 * 18 15 5 20 20 C 1.53008 * 109.46681 * 165.49639 * 19 18 15 21 21 H 1.08993 * 109.46992 * 304.99965 * 20 19 18 22 22 C 1.53002 * 109.46942 * 64.99797 * 20 19 18 23 23 C 1.52996 * 109.46740 * 184.99801 * 20 19 18 24 24 C 1.52998 * 117.49987 * 128.62171 * 23 20 19 25 25 C 1.52996 * 59.99995 * 252.50731 * 24 23 20 26 26 H 1.09002 * 109.47162 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46872 * 299.99952 * 1 2 3 28 28 H 1.08999 * 109.47296 * 59.99798 * 1 2 3 29 29 H 1.09005 * 109.46550 * 59.99808 * 3 2 1 30 30 H 1.08995 * 109.47039 * 300.00685 * 3 2 1 31 31 H 1.09003 * 109.47380 * 304.99653 * 4 3 2 32 32 H 1.09001 * 109.46745 * 185.00615 * 4 3 2 33 33 H 1.08997 * 109.47526 * 40.06638 * 6 5 4 34 34 H 1.09003 * 109.46585 * 160.06842 * 6 5 4 35 35 H 0.96997 * 119.99886 * 179.97438 * 10 9 7 36 36 H 0.97000 * 119.99550 * 245.55092 * 18 15 5 37 37 H 1.08992 * 109.47238 * 45.49588 * 19 18 15 38 38 H 1.09000 * 109.46920 * 285.49182 * 19 18 15 39 39 H 1.09003 * 109.47093 * 60.00230 * 22 20 19 40 40 H 1.09003 * 109.47308 * 299.99536 * 22 20 19 41 41 H 1.08998 * 109.46731 * 179.97438 * 22 20 19 42 42 H 1.09001 * 115.54989 * 274.32823 * 23 20 19 43 43 H 1.08997 * 117.49816 * 0.02562 * 24 23 20 44 44 H 1.09007 * 117.49751 * 145.01608 * 24 23 20 45 45 H 1.08997 * 117.49925 * 252.50968 * 25 24 23 46 46 H 1.09003 * 117.49749 * 107.48614 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0014 -0.8955 -1.3758 7 6 5.2425 -1.4354 -0.7129 8 1 5.9095 -0.7666 -0.1893 9 6 5.5262 -2.7833 -0.7747 10 7 6.6090 -3.2545 -0.1957 11 14 4.3727 -3.9400 -1.6807 12 1 4.7888 -4.0404 -3.1027 13 1 4.4267 -5.2848 -1.0530 14 1 2.9858 -3.4144 -1.6066 15 16 4.4474 1.5121 -2.5243 16 8 3.7075 2.7207 -2.4197 17 8 4.4185 0.6803 -3.6762 18 7 6.0351 1.9127 -2.2766 19 6 7.0655 0.8717 -2.3007 20 6 8.4458 1.5229 -2.4098 21 1 8.4703 2.1788 -3.2799 22 6 8.7253 2.3402 -1.1469 23 6 9.5119 0.4359 -2.5603 24 6 10.5020 0.5730 -3.7186 25 6 9.4068 -0.4940 -3.7706 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8508 0.5685 0.8427 32 1 3.9785 2.1765 0.0903 33 1 3.1193 -1.3165 -0.8934 34 1 4.0045 -1.1698 -2.4307 35 1 6.8084 -4.2028 -0.2389 36 1 6.2826 2.8367 -2.1157 37 1 6.9028 0.2191 -3.1584 38 1 7.0117 0.2859 -1.3830 39 1 8.7009 1.6841 -0.2767 40 1 7.9658 3.1146 -1.0397 41 1 9.7088 2.8037 -1.2245 42 1 9.8831 0.0092 -1.6285 43 1 10.3941 1.4379 -4.3732 44 1 11.5249 0.2366 -3.5490 45 1 9.7091 -1.5324 -3.6352 46 1 8.5780 -0.3314 -4.4597 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619708173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:24 Heat of formation + Delta-G solvation = -126.623685 kcal Electronic energy + Delta-G solvation = -27236.257421 eV Core-core repulsion = 23480.720353 eV Total energy + Delta-G solvation = -3755.537068 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.33714 -39.07934 -38.29105 -37.01532 -36.88768 -36.16591 -34.47540 -32.28020 -31.31539 -28.80975 -27.06308 -26.99233 -24.24289 -23.75670 -23.19628 -23.03975 -20.95837 -20.23415 -19.09110 -18.66102 -18.40808 -17.49294 -17.07138 -16.92499 -16.40205 -16.37791 -15.95007 -15.72234 -15.47976 -15.30816 -14.94629 -14.45986 -14.02034 -13.93247 -13.71934 -13.50630 -13.42872 -13.35480 -13.20154 -13.03198 -13.00547 -12.70204 -12.53344 -12.47477 -12.32188 -12.16632 -12.08208 -12.02553 -11.86480 -11.68593 -11.54758 -11.02979 -10.77931 -10.67980 -10.51886 -10.30845 -9.70362 -8.20214 -6.19570 -0.29873 1.37027 1.41064 1.50055 1.97761 2.40460 2.59653 2.94530 2.97748 3.16454 3.43491 3.74733 3.91861 3.99058 4.03289 4.20655 4.23033 4.30493 4.41136 4.50210 4.50944 4.56361 4.59974 4.63398 4.70250 4.80364 4.83850 4.86772 4.96510 5.02009 5.02892 5.07042 5.17120 5.25497 5.30387 5.30957 5.39287 5.46578 5.56061 5.57863 5.82496 6.24100 6.38404 6.41196 6.82844 7.42804 8.93702 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011037 B = 0.006100 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.275958 B = 4589.387400 C = 6188.796271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.042 3.958 4 C 0.127 3.873 5 N -0.984 5.984 6 C 0.226 3.774 7 C -0.519 4.519 8 H 0.065 0.935 9 C 0.031 3.969 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.276 1.276 13 H -0.282 1.282 14 H -0.252 1.252 15 S 2.797 3.203 16 O -1.001 7.001 17 O -1.017 7.017 18 N -1.112 6.112 19 C 0.128 3.872 20 C -0.058 4.058 21 H 0.086 0.914 22 C -0.139 4.139 23 C -0.154 4.154 24 C -0.153 4.153 25 C -0.199 4.199 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.048 0.952 34 H 0.025 0.975 35 H 0.263 0.737 36 H 0.421 0.579 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.085 0.915 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.224 12.276 -0.935 12.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.328 6.328 3 C -0.037 4.037 4 C 0.002 3.998 5 N -0.824 5.824 6 C 0.101 3.899 7 C -0.558 4.558 8 H 0.083 0.917 9 C -0.168 4.168 10 N -0.570 5.570 11 Si 0.733 3.267 12 H -0.202 1.202 13 H -0.208 1.208 14 H -0.176 1.176 15 S 2.805 3.195 16 O -0.985 6.985 17 O -1.000 7.000 18 N -0.876 5.876 19 C 0.002 3.998 20 C -0.078 4.078 21 H 0.105 0.895 22 C -0.197 4.197 23 C -0.173 4.173 24 C -0.189 4.189 25 C -0.236 4.236 26 H 0.105 0.895 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.127 0.873 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.258 0.742 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.115 0.885 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.104 0.896 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.638 12.016 -1.678 12.150 hybrid contribution -0.288 -0.829 0.035 0.878 sum -0.926 11.188 -1.643 11.345 Atomic orbital electron populations 1.22900 0.80385 1.03248 1.00727 1.88002 1.20798 1.28554 1.95494 1.23186 0.94267 0.84755 1.01456 1.21378 0.92597 0.98772 0.87099 1.57331 1.79492 1.16707 1.28841 1.19306 0.97533 0.76612 0.96485 1.21580 1.07225 0.93344 1.33700 0.91679 1.25394 0.96010 0.99532 0.95883 1.69982 1.26833 1.14374 1.45834 0.86304 0.81677 0.79336 0.79352 1.20192 1.20763 1.17604 1.01234 0.73185 0.71851 0.73258 1.93537 1.70617 1.46773 1.87616 1.93518 1.87227 1.69935 1.49359 1.55590 1.24683 1.17195 1.90094 1.21352 0.87512 0.88854 1.02127 1.20868 0.90911 0.95608 1.00385 0.89534 1.21781 1.02456 0.99495 0.95939 1.22260 1.00691 1.00399 0.93917 1.23073 0.95117 1.00587 1.00171 1.22930 1.02246 0.96481 1.01959 0.89501 0.92271 0.93954 0.89611 0.93497 0.89769 0.87273 0.93425 0.95719 0.92762 0.74238 0.93039 0.91522 0.93479 0.91472 0.90789 0.88451 0.87517 0.87647 0.89618 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 11.01 113.37 1.25 1.83 16 2 O -0.41 -13.84 8.99 -148.98 -1.34 -15.18 16 3 C 0.04 1.22 6.28 71.98 0.45 1.67 16 4 C 0.13 4.10 5.74 86.38 0.50 4.60 16 5 N -0.98 -38.74 2.83 -519.85 -1.47 -40.21 16 6 C 0.23 10.67 4.39 85.63 0.38 11.04 16 7 C -0.52 -27.30 9.06 25.60 0.23 -27.07 16 8 H 0.07 3.59 6.71 -2.91 -0.02 3.57 16 9 C 0.03 1.73 5.47 84.66 0.46 2.19 16 10 N -0.93 -54.36 13.96 21.45 0.30 -54.06 16 11 Si 0.91 43.90 27.39 68.60 1.88 45.78 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 14 H -0.25 -11.73 6.66 99.48 0.66 -11.07 16 15 S 2.80 105.61 6.07 -56.49 -0.34 105.26 16 16 O -1.00 -37.14 17.17 -128.00 -2.20 -39.34 16 17 O -1.02 -46.36 16.00 -128.00 -2.05 -48.41 16 18 N -1.11 -34.50 5.93 -187.49 -1.11 -35.61 16 19 C 0.13 4.40 5.51 86.38 0.48 4.88 16 20 C -0.06 -1.53 2.64 -10.79 -0.03 -1.56 16 21 H 0.09 2.01 7.90 -2.39 -0.02 1.99 16 22 C -0.14 -3.11 9.05 71.98 0.65 -2.45 16 23 C -0.15 -4.24 5.15 -10.80 -0.06 -4.30 16 24 C -0.15 -3.38 10.18 30.59 0.31 -3.07 16 25 C -0.20 -5.80 9.67 30.59 0.30 -5.50 16 26 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.05 1.42 7.97 -2.39 -0.02 1.40 16 31 H 0.08 2.88 8.09 -2.39 -0.02 2.87 16 32 H 0.11 2.80 7.78 -2.39 -0.02 2.78 16 33 H 0.05 2.31 5.90 -2.39 -0.01 2.29 16 34 H 0.02 1.25 5.98 -2.39 -0.01 1.24 16 35 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 36 H 0.42 10.08 7.42 -96.74 -0.72 9.37 16 37 H 0.05 2.03 6.73 -2.39 -0.02 2.01 16 38 H 0.07 2.72 5.85 -2.39 -0.01 2.70 16 39 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.29 6.91 -2.39 -0.02 1.27 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.10 2.88 8.11 -2.39 -0.02 2.86 16 43 H 0.11 2.02 8.05 -2.39 -0.02 2.00 16 44 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 45 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 46 H 0.09 2.64 7.58 -2.39 -0.02 2.62 16 Total: -1.00 -68.67 377.81 -1.21 -69.88 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.21 Total: 29.63 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 4.92 Total: -17.74 kcal Atomic # 7 Polarization: -127.60 SS G_CDS: -2.28 Total: -129.88 kcal Atomic # 8 Polarization: -97.34 SS G_CDS: -5.59 Total: -102.93 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.88 Total: 45.78 kcal Atomic # 16 Polarization: 105.61 SS G_CDS: -0.34 Total: 105.26 kcal Total: -68.67 -1.21 -69.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619708173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.748 kcal (2) G-P(sol) polarization free energy of solvation -68.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds