Wall clock time and date at job start Fri Apr 10 2020 18:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00011 * 2 1 4 4 C 1.53011 * 109.46863 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.46961 * 64.97620 * 4 3 2 6 6 C 1.46498 * 119.99972 * 274.38074 * 5 4 3 7 7 C 1.50707 * 109.47283 * 278.84878 * 6 5 4 8 8 H 1.07999 * 119.99587 * 3.36251 * 7 6 5 9 9 C 1.37873 * 120.00127 * 183.35949 * 7 6 5 10 10 N 1.31515 * 119.99813 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00270 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46948 * 60.00017 * 11 9 7 13 13 H 1.48496 * 109.47472 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47138 * 300.00373 * 11 9 7 15 15 S 1.65602 * 119.99960 * 94.38641 * 5 4 3 16 16 O 1.42096 * 106.40136 * 329.67321 * 15 5 4 17 17 O 1.42102 * 106.40251 * 196.74823 * 15 5 4 18 18 N 1.65597 * 107.21718 * 83.21348 * 15 5 4 19 19 C 1.46498 * 120.00459 * 64.97181 * 18 15 5 20 20 C 1.52999 * 109.47384 * 164.04738 * 19 18 15 21 21 H 1.09002 * 109.47024 * 54.99862 * 20 19 18 22 22 C 1.53001 * 109.47148 * 294.99557 * 20 19 18 23 23 C 1.53001 * 109.47136 * 174.99818 * 20 19 18 24 24 C 1.53003 * 117.49985 * 300.00090 * 23 20 19 25 25 C 1.53001 * 60.03069 * 252.49935 * 24 23 20 26 26 H 1.09004 * 109.46762 * 299.99684 * 1 2 3 27 27 H 1.08994 * 109.47429 * 59.99887 * 1 2 3 28 28 H 1.09001 * 109.46887 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46896 * 60.00570 * 3 2 1 30 30 H 1.08993 * 109.46811 * 300.00112 * 3 2 1 31 31 H 1.09000 * 109.46537 * 304.97344 * 4 3 2 32 32 H 1.08999 * 109.46436 * 184.97815 * 4 3 2 33 33 H 1.08993 * 109.47097 * 38.84847 * 6 5 4 34 34 H 1.09002 * 109.47382 * 158.84922 * 6 5 4 35 35 H 0.97008 * 119.99901 * 179.97438 * 10 9 7 36 36 H 0.96999 * 119.99804 * 244.96785 * 18 15 5 37 37 H 1.09003 * 109.46966 * 44.04447 * 19 18 15 38 38 H 1.09005 * 109.47089 * 284.04854 * 19 18 15 39 39 H 1.08996 * 109.47030 * 300.00265 * 22 20 19 40 40 H 1.09006 * 109.46942 * 60.00096 * 22 20 19 41 41 H 1.08996 * 109.47144 * 180.02562 * 22 20 19 42 42 H 1.08999 * 115.56047 * 85.68577 * 23 20 19 43 43 H 1.09003 * 117.49651 * 359.97438 * 24 23 20 44 44 H 1.08994 * 117.50179 * 144.99436 * 24 23 20 45 45 H 1.09001 * 117.50282 * 107.50278 * 25 24 23 46 46 H 1.09010 * 117.49580 * 252.52323 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5638 -1.2525 6 6 4.0131 -0.8957 -1.3727 7 6 5.2772 -1.4195 -0.7410 8 1 5.9557 -0.7398 -0.2469 9 6 5.5674 -2.7663 -0.7938 10 7 4.7414 -3.5938 -1.3959 11 14 7.1346 -3.4155 -0.0115 12 1 7.1273 -3.1068 1.4410 13 1 7.2124 -4.8857 -0.2052 14 1 8.3103 -2.7699 -0.6489 15 16 4.4308 1.5120 -2.5316 16 8 3.6707 2.7087 -2.4345 17 8 4.4164 0.6729 -3.6783 18 7 6.0113 1.9408 -2.2859 19 6 7.0577 0.9155 -2.2905 20 6 8.4258 1.5836 -2.4425 21 1 8.5537 2.3316 -1.6601 22 6 8.5144 2.2584 -3.8128 23 6 9.5256 0.5267 -2.3224 24 6 9.6051 -0.2648 -1.0155 25 6 10.6606 0.7968 -1.3315 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8463 -0.8899 31 1 3.8514 0.5685 0.8412 32 1 3.9785 2.1765 0.0885 33 1 3.1489 -1.3244 -0.8654 34 1 3.9911 -1.1742 -2.4263 35 1 4.9458 -4.5414 -1.4334 36 1 6.2443 2.8708 -2.1390 37 1 6.8928 0.2317 -3.1233 38 1 7.0266 0.3603 -1.3530 39 1 8.3864 1.5103 -4.5951 40 1 7.7308 3.0113 -3.8983 41 1 9.4891 2.7339 -3.9212 42 1 9.7766 0.0023 -3.2444 43 1 8.8742 -0.0323 -0.2410 44 1 9.9081 -1.3099 -1.0777 45 1 10.6239 1.7274 -0.7652 46 1 11.6580 0.4499 -1.6021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619708174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:27 Heat of formation + Delta-G solvation = -107.246444 kcal Electronic energy + Delta-G solvation = -27290.510120 eV Core-core repulsion = 23535.813313 eV Total energy + Delta-G solvation = -3754.696808 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.24860 -37.68292 -36.56253 -35.30653 -35.13022 -34.88213 -32.50679 -31.16393 -29.43059 -26.72936 -25.84509 -25.59611 -22.78951 -22.66510 -22.05231 -21.71386 -19.89970 -18.65095 -17.18255 -16.90291 -16.37851 -15.91112 -15.64829 -15.52277 -15.34792 -14.84421 -14.48723 -14.42172 -14.26163 -13.87929 -13.37097 -12.66849 -12.53536 -12.45875 -12.25803 -12.00792 -11.84658 -11.71309 -11.61815 -11.51790 -11.37895 -11.35023 -11.13725 -11.05288 -10.99553 -10.78028 -10.65425 -10.55116 -10.31752 -10.05982 -9.92428 -9.76318 -9.67713 -9.23961 -8.85141 -8.37156 -7.94852 -5.99987 -4.05491 1.35636 3.30535 3.35890 3.36997 3.59024 3.96829 4.21609 4.21776 4.43567 4.75383 4.99524 5.03384 5.16970 5.23752 5.33851 5.40360 5.45116 5.48354 5.50496 5.58999 5.69528 5.71327 5.74056 5.79234 5.83693 5.88075 5.97438 6.02416 6.13012 6.18560 6.22700 6.27743 6.33149 6.38341 6.56877 6.59244 6.71573 7.37796 7.57000 7.59873 7.64280 7.84586 7.98843 8.29147 8.97629 9.58475 11.07906 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010686 B = 0.006355 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.664947 B = 4404.781372 C = 6221.262922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.042 3.958 4 C 0.138 3.862 5 N -0.984 5.984 6 C 0.244 3.756 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.067 3.933 10 N -0.888 5.888 11 Si 0.882 3.118 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.265 1.265 15 S 2.783 3.217 16 O -1.007 7.007 17 O -0.977 6.977 18 N -1.131 6.131 19 C 0.124 3.876 20 C -0.066 4.066 21 H 0.072 0.928 22 C -0.144 4.144 23 C -0.144 4.144 24 C -0.174 4.174 25 C -0.184 4.184 26 H 0.033 0.967 27 H 0.035 0.965 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.263 0.737 36 H 0.404 0.596 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.031 10.937 1.911 11.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.037 4.037 4 C 0.011 3.989 5 N -0.826 5.826 6 C 0.122 3.878 7 C -0.574 4.574 8 H 0.079 0.921 9 C -0.137 4.137 10 N -0.526 5.526 11 Si 0.710 3.290 12 H -0.205 1.205 13 H -0.216 1.216 14 H -0.190 1.190 15 S 2.791 3.209 16 O -0.991 6.991 17 O -0.960 6.960 18 N -0.890 5.890 19 C -0.002 4.002 20 C -0.086 4.086 21 H 0.090 0.910 22 C -0.201 4.201 23 C -0.163 4.163 24 C -0.211 4.211 25 C -0.221 4.221 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.236 0.764 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.514 10.587 1.060 11.206 hybrid contribution 0.989 -0.026 0.912 1.345 sum 4.503 10.562 1.972 11.650 Atomic orbital electron populations 1.22697 0.82439 1.02399 0.99083 1.88103 1.18372 1.27076 1.95151 1.23129 0.95473 0.85168 0.99895 1.21027 0.91268 0.97454 0.89181 1.57631 1.78838 1.19355 1.26744 1.19305 0.98087 0.71419 0.99003 1.21491 1.06517 0.92746 1.36650 0.92095 1.24904 0.96609 0.96875 0.95264 1.69938 1.36329 1.03668 1.42650 0.86830 0.84418 0.77931 0.79821 1.20470 1.21604 1.19041 1.01792 0.72664 0.72309 0.74142 1.93532 1.69200 1.48505 1.87832 1.93578 1.86385 1.68276 1.47778 1.56003 1.26061 1.16016 1.90894 1.21475 0.85104 0.89276 1.04357 1.20920 0.93353 0.96061 0.98228 0.90994 1.21810 1.01071 1.00668 0.96588 1.22250 0.98186 1.01134 0.94718 1.23045 1.01704 0.97010 0.99304 1.23005 0.94364 1.00869 1.03836 0.94835 0.94632 0.89882 0.93331 0.93047 0.89132 0.90661 0.92911 0.93209 0.92762 0.76429 0.90170 0.89550 0.92279 0.92551 0.92918 0.87725 0.88351 0.88733 0.89142 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.86 9.04 -35.23 -0.32 -7.18 16 3 C 0.04 0.69 6.28 37.16 0.23 0.93 16 4 C 0.14 2.38 5.75 -4.04 -0.02 2.35 16 5 N -0.98 -20.14 2.82 -115.66 -0.33 -20.47 16 6 C 0.24 6.07 5.30 -5.19 -0.03 6.04 16 7 C -0.53 -13.59 8.63 -34.44 -0.30 -13.89 16 8 H 0.06 1.46 6.25 -52.49 -0.33 1.13 16 9 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 11 Si 0.88 20.10 29.54 -169.99 -5.02 15.08 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.27 -5.62 6.27 56.52 0.35 -5.27 16 15 S 2.78 54.80 6.07 -107.50 -0.65 54.14 16 16 O -1.01 -20.15 17.11 -57.17 -0.98 -21.12 16 17 O -0.98 -23.05 16.01 -57.17 -0.92 -23.97 16 18 N -1.13 -17.88 5.57 -10.61 -0.06 -17.94 16 19 C 0.12 2.04 5.45 -4.04 -0.02 2.02 16 20 C -0.07 -0.86 2.57 -90.62 -0.23 -1.09 16 21 H 0.07 0.85 7.90 -51.93 -0.41 0.44 16 22 C -0.14 -1.72 9.06 37.16 0.34 -1.38 16 23 C -0.14 -1.89 5.15 -90.58 -0.47 -2.36 16 24 C -0.17 -2.47 9.54 -26.73 -0.25 -2.73 16 25 C -0.18 -2.12 10.18 -26.69 -0.27 -2.39 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.87 7.87 -51.93 -0.41 0.46 16 31 H 0.09 1.59 8.10 -51.93 -0.42 1.17 16 32 H 0.08 1.07 7.82 -51.93 -0.41 0.67 16 33 H 0.05 1.42 6.62 -51.93 -0.34 1.07 16 34 H 0.05 1.39 6.79 -51.93 -0.35 1.04 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 36 H 0.40 5.16 8.42 -34.47 -0.29 4.87 16 37 H 0.08 1.51 7.73 -51.93 -0.40 1.11 16 38 H 0.09 1.56 4.81 -51.93 -0.25 1.31 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.65 7.56 -51.93 -0.39 0.26 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 1.36 8.11 -51.93 -0.42 0.94 16 43 H 0.10 1.47 7.59 -51.93 -0.39 1.08 16 44 H 0.09 1.42 7.44 -51.93 -0.39 1.03 16 45 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 46 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -31.86 380.68 -9.57 -41.44 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -7.77 Total: 8.29 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -0.01 Total: -9.27 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: 0.35 Total: -63.14 kcal Atomic # 8 Polarization: -50.06 SS G_CDS: -2.21 Total: -52.27 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: 54.80 SS G_CDS: -0.65 Total: 54.14 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.86 -9.57 -41.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619708174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.810 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds