Wall clock time and date at job start Fri Apr 10 2020 18:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00011 * 2 1 4 4 C 1.53011 * 109.46863 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.46961 * 64.97620 * 4 3 2 6 6 C 1.46498 * 119.99972 * 274.38074 * 5 4 3 7 7 C 1.50707 * 109.47283 * 278.84878 * 6 5 4 8 8 H 1.07999 * 119.99587 * 3.36251 * 7 6 5 9 9 C 1.37873 * 120.00127 * 183.35949 * 7 6 5 10 10 N 1.31515 * 119.99813 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00270 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46948 * 60.00017 * 11 9 7 13 13 H 1.48496 * 109.47472 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47138 * 300.00373 * 11 9 7 15 15 S 1.65602 * 119.99960 * 94.38641 * 5 4 3 16 16 O 1.42096 * 106.40136 * 329.67321 * 15 5 4 17 17 O 1.42102 * 106.40251 * 196.74823 * 15 5 4 18 18 N 1.65597 * 107.21718 * 83.21348 * 15 5 4 19 19 C 1.46498 * 120.00459 * 64.97181 * 18 15 5 20 20 C 1.52999 * 109.47384 * 164.04738 * 19 18 15 21 21 H 1.09002 * 109.47024 * 54.99862 * 20 19 18 22 22 C 1.53001 * 109.47148 * 294.99557 * 20 19 18 23 23 C 1.53001 * 109.47136 * 174.99818 * 20 19 18 24 24 C 1.53003 * 117.49985 * 300.00090 * 23 20 19 25 25 C 1.53001 * 60.03069 * 252.49935 * 24 23 20 26 26 H 1.09004 * 109.46762 * 299.99684 * 1 2 3 27 27 H 1.08994 * 109.47429 * 59.99887 * 1 2 3 28 28 H 1.09001 * 109.46887 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46896 * 60.00570 * 3 2 1 30 30 H 1.08993 * 109.46811 * 300.00112 * 3 2 1 31 31 H 1.09000 * 109.46537 * 304.97344 * 4 3 2 32 32 H 1.08999 * 109.46436 * 184.97815 * 4 3 2 33 33 H 1.08993 * 109.47097 * 38.84847 * 6 5 4 34 34 H 1.09002 * 109.47382 * 158.84922 * 6 5 4 35 35 H 0.97008 * 119.99901 * 179.97438 * 10 9 7 36 36 H 0.96999 * 119.99804 * 244.96785 * 18 15 5 37 37 H 1.09003 * 109.46966 * 44.04447 * 19 18 15 38 38 H 1.09005 * 109.47089 * 284.04854 * 19 18 15 39 39 H 1.08996 * 109.47030 * 300.00265 * 22 20 19 40 40 H 1.09006 * 109.46942 * 60.00096 * 22 20 19 41 41 H 1.08996 * 109.47144 * 180.02562 * 22 20 19 42 42 H 1.08999 * 115.56047 * 85.68577 * 23 20 19 43 43 H 1.09003 * 117.49651 * 359.97438 * 24 23 20 44 44 H 1.08994 * 117.50179 * 144.99436 * 24 23 20 45 45 H 1.09001 * 117.50282 * 107.50278 * 25 24 23 46 46 H 1.09010 * 117.49580 * 252.52323 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5638 -1.2525 6 6 4.0131 -0.8957 -1.3727 7 6 5.2772 -1.4195 -0.7410 8 1 5.9557 -0.7398 -0.2469 9 6 5.5674 -2.7663 -0.7938 10 7 4.7414 -3.5938 -1.3959 11 14 7.1346 -3.4155 -0.0115 12 1 7.1273 -3.1068 1.4410 13 1 7.2124 -4.8857 -0.2052 14 1 8.3103 -2.7699 -0.6489 15 16 4.4308 1.5120 -2.5316 16 8 3.6707 2.7087 -2.4345 17 8 4.4164 0.6729 -3.6783 18 7 6.0113 1.9408 -2.2859 19 6 7.0577 0.9155 -2.2905 20 6 8.4258 1.5836 -2.4425 21 1 8.5537 2.3316 -1.6601 22 6 8.5144 2.2584 -3.8128 23 6 9.5256 0.5267 -2.3224 24 6 9.6051 -0.2648 -1.0155 25 6 10.6606 0.7968 -1.3315 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8463 -0.8899 31 1 3.8514 0.5685 0.8412 32 1 3.9785 2.1765 0.0885 33 1 3.1489 -1.3244 -0.8654 34 1 3.9911 -1.1742 -2.4263 35 1 4.9458 -4.5414 -1.4334 36 1 6.2443 2.8708 -2.1390 37 1 6.8928 0.2317 -3.1233 38 1 7.0266 0.3603 -1.3530 39 1 8.3864 1.5103 -4.5951 40 1 7.7308 3.0113 -3.8983 41 1 9.4891 2.7339 -3.9212 42 1 9.7766 0.0023 -3.2444 43 1 8.8742 -0.0323 -0.2410 44 1 9.9081 -1.3099 -1.0777 45 1 10.6239 1.7274 -0.7652 46 1 11.6580 0.4499 -1.6021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619708174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:27 Heat of formation + Delta-G solvation = -130.210415 kcal Electronic energy + Delta-G solvation = -27291.505913 eV Core-core repulsion = 23535.813313 eV Total energy + Delta-G solvation = -3755.692600 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.33036 -39.04511 -38.24033 -36.93891 -36.83639 -36.13628 -34.47717 -32.29891 -30.99935 -28.44797 -27.04271 -26.95973 -24.57286 -23.77357 -23.26931 -23.03177 -21.06514 -20.15483 -18.74783 -18.57892 -18.20108 -17.39794 -17.05147 -16.85267 -16.51943 -16.43105 -15.96517 -15.76931 -15.43220 -15.22631 -14.89750 -14.40615 -13.94465 -13.78504 -13.49293 -13.44252 -13.36023 -13.21285 -13.16017 -13.04886 -12.88481 -12.72447 -12.58036 -12.50754 -12.29275 -12.21310 -12.04333 -11.93851 -11.80919 -11.70373 -11.59270 -10.98841 -10.79991 -10.53881 -10.42578 -10.25858 -9.68427 -8.05781 -6.17999 -0.25114 1.47964 1.50488 1.56105 2.04811 2.50084 2.65091 2.95329 3.00567 3.27127 3.50732 3.74334 3.94375 3.99664 4.04820 4.21855 4.23460 4.38697 4.41614 4.48465 4.51115 4.56001 4.59459 4.64522 4.69535 4.84436 4.86340 4.87342 4.94542 5.04911 5.07073 5.13957 5.19587 5.28784 5.32873 5.37706 5.52382 5.55287 5.65481 5.85642 5.97690 6.23414 6.30034 6.41522 6.93505 7.50654 9.02324 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010686 B = 0.006355 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.664947 B = 4404.781372 C = 6221.262922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.039 3.961 4 C 0.128 3.872 5 N -0.989 5.989 6 C 0.264 3.736 7 C -0.528 4.528 8 H 0.077 0.923 9 C 0.011 3.989 10 N -0.932 5.932 11 Si 0.943 3.057 12 H -0.271 1.271 13 H -0.299 1.299 14 H -0.242 1.242 15 S 2.796 3.204 16 O -1.007 7.007 17 O -1.020 7.020 18 N -1.111 6.111 19 C 0.125 3.875 20 C -0.057 4.057 21 H 0.095 0.905 22 C -0.144 4.144 23 C -0.155 4.155 24 C -0.200 4.200 25 C -0.152 4.152 26 H 0.061 0.939 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.028 0.972 34 H 0.010 0.990 35 H 0.260 0.740 36 H 0.422 0.578 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.108 0.892 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.051 13.396 3.383 15.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.039 4.039 4 C 0.002 3.998 5 N -0.829 5.829 6 C 0.140 3.860 7 C -0.568 4.568 8 H 0.095 0.905 9 C -0.188 4.188 10 N -0.573 5.573 11 Si 0.768 3.232 12 H -0.196 1.196 13 H -0.226 1.226 14 H -0.166 1.166 15 S 2.805 3.195 16 O -0.991 6.991 17 O -1.004 7.004 18 N -0.874 5.874 19 C -0.001 4.001 20 C -0.077 4.077 21 H 0.113 0.887 22 C -0.201 4.201 23 C -0.174 4.174 24 C -0.237 4.237 25 C -0.189 4.189 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.128 0.872 33 H 0.046 0.954 34 H 0.028 0.972 35 H 0.069 0.931 36 H 0.258 0.742 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.120 0.880 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.126 0.874 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.527 13.107 2.549 14.451 hybrid contribution 0.297 -0.726 0.452 0.905 sum 5.824 12.381 3.001 14.008 Atomic orbital electron populations 1.22876 0.80532 1.03104 1.00626 1.88051 1.20707 1.28563 1.95455 1.23220 0.94758 0.84711 1.01218 1.21371 0.92361 0.98760 0.87326 1.57482 1.79642 1.17494 1.28305 1.18736 0.97171 0.74016 0.96062 1.21791 1.06490 0.92937 1.35539 0.90482 1.25766 0.99775 0.97362 0.95875 1.70104 1.38595 1.03795 1.44757 0.85851 0.81318 0.76695 0.79317 1.19569 1.22580 1.16576 1.01202 0.73344 0.71689 0.73305 1.93522 1.69861 1.47977 1.87707 1.93528 1.87237 1.69595 1.50029 1.55546 1.24409 1.17076 1.90375 1.21420 0.87174 0.89269 1.02213 1.20887 0.90810 0.96276 0.99723 0.88711 1.21820 1.02603 1.00375 0.95334 1.22303 0.99362 1.01225 0.94484 1.23017 1.03575 0.97248 0.99851 1.23089 0.94069 1.00195 1.01559 0.92079 0.94173 0.89764 0.89585 0.93925 0.89596 0.87155 0.95393 0.97232 0.93100 0.74158 0.93340 0.90984 0.93649 0.92194 0.90544 0.88021 0.89260 0.89986 0.87383 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 11.01 113.37 1.25 1.94 16 2 O -0.41 -15.25 9.04 -148.98 -1.35 -16.60 16 3 C 0.04 1.24 6.28 71.99 0.45 1.69 16 4 C 0.13 4.24 5.75 86.38 0.50 4.74 16 5 N -0.99 -40.81 2.82 -519.84 -1.47 -42.28 16 6 C 0.26 13.69 5.30 85.64 0.45 14.14 16 7 C -0.53 -27.35 8.63 25.60 0.22 -27.13 16 8 H 0.08 3.66 6.25 -2.91 -0.02 3.64 16 9 C 0.01 0.60 5.46 84.65 0.46 1.06 16 10 N -0.93 -55.63 13.29 21.45 0.28 -55.34 16 11 Si 0.94 41.63 29.54 68.60 2.03 43.66 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 14 H -0.24 -9.68 6.27 99.48 0.62 -9.05 16 15 S 2.80 110.09 6.07 -56.49 -0.34 109.75 16 16 O -1.01 -39.04 17.11 -128.00 -2.19 -41.23 16 17 O -1.02 -49.93 16.01 -128.00 -2.05 -51.98 16 18 N -1.11 -33.68 5.57 -187.49 -1.04 -34.72 16 19 C 0.13 4.05 5.45 86.38 0.47 4.52 16 20 C -0.06 -1.36 2.57 -10.79 -0.03 -1.38 16 21 H 0.09 1.85 7.90 -2.39 -0.02 1.83 16 22 C -0.14 -3.09 9.06 71.98 0.65 -2.44 16 23 C -0.15 -3.73 5.15 -10.77 -0.06 -3.79 16 24 C -0.20 -5.30 9.54 30.60 0.29 -5.01 16 25 C -0.15 -2.95 10.18 30.62 0.31 -2.64 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.08 2.26 8.14 -2.39 -0.02 2.25 16 29 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.04 1.41 7.87 -2.39 -0.02 1.39 16 31 H 0.09 2.94 8.10 -2.39 -0.02 2.92 16 32 H 0.11 2.84 7.82 -2.39 -0.02 2.82 16 33 H 0.03 1.58 6.62 -2.39 -0.02 1.57 16 34 H 0.01 0.57 6.79 -2.39 -0.02 0.56 16 35 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 36 H 0.42 9.64 8.42 -96.75 -0.81 8.82 16 37 H 0.05 1.88 7.73 -2.39 -0.02 1.86 16 38 H 0.07 2.55 4.81 -2.38 -0.01 2.54 16 39 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 1.23 7.56 -2.38 -0.02 1.21 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.10 2.50 8.11 -2.39 -0.02 2.48 16 43 H 0.09 2.51 7.59 -2.39 -0.02 2.49 16 44 H 0.08 2.35 7.44 -2.39 -0.02 2.33 16 45 H 0.11 1.75 8.05 -2.39 -0.02 1.73 16 46 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -71.75 380.68 -1.08 -72.83 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.07 Total: 30.22 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 4.98 Total: -14.30 kcal Atomic # 7 Polarization: -130.12 SS G_CDS: -2.22 Total: -132.34 kcal Atomic # 8 Polarization: -104.23 SS G_CDS: -5.59 Total: -109.81 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 110.09 SS G_CDS: -0.34 Total: 109.75 kcal Total: -71.75 -1.08 -72.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619708174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.384 kcal (2) G-P(sol) polarization free energy of solvation -71.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds