Wall clock time and date at job start Fri Apr 10 2020 18:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.29304 * 2 1 4 4 C 1.54003 * 110.32182 * 237.86555 * 2 1 3 5 5 N 1.47486 * 107.08454 * 242.31216 * 4 2 1 6 6 C 1.34781 * 127.03579 * 154.29172 * 5 4 2 7 7 O 1.21565 * 120.00125 * 180.02562 * 6 5 4 8 8 C 1.47728 * 119.99551 * 0.02562 * 6 5 4 9 9 C 1.40944 * 125.97118 * 179.97438 * 8 6 5 10 10 C 1.36166 * 107.94906 * 179.76819 * 9 8 6 11 11 N 1.35799 * 107.31567 * 0.54153 * 10 9 8 12 12 N 1.31837 * 125.97531 * 359.69395 * 8 6 5 13 13 C 1.47422 * 108.07335 * 179.17570 * 11 10 9 14 14 C 1.54654 * 102.34819 * 344.68677 * 13 11 10 15 15 O 1.36126 * 140.87746 * 180.69230 * 10 9 8 16 16 C 1.48113 * 105.93573 * 334.55302 * 5 4 2 17 17 C 1.54620 * 110.41495 * 122.20144 * 2 1 3 18 18 H 1.09004 * 110.73930 * 22.43376 * 17 2 1 19 19 C 1.53007 * 110.73501 * 259.29970 * 17 2 1 20 20 N 1.46499 * 109.47106 * 174.99432 * 19 17 2 21 21 C 1.36933 * 119.99935 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00290 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99686 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00305 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99646 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47335 * 59.99598 * 25 23 21 27 27 H 1.48493 * 109.46905 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47093 * 299.99777 * 25 23 21 29 29 H 1.09001 * 109.47456 * 180.68457 * 1 2 3 30 30 H 1.09006 * 109.46648 * 300.67406 * 1 2 3 31 31 H 1.08996 * 109.47142 * 60.67595 * 1 2 3 32 32 H 1.08999 * 109.91434 * 122.95292 * 4 2 1 33 33 H 1.09002 * 110.07717 * 1.75872 * 4 2 1 34 34 H 1.08005 * 126.02271 * 359.79550 * 9 8 6 35 35 H 1.09002 * 110.83066 * 226.47774 * 13 11 10 36 36 H 1.09003 * 110.83085 * 102.90317 * 13 11 10 37 37 H 1.08999 * 110.85412 * 266.66368 * 14 13 11 38 38 H 1.09004 * 111.02516 * 143.10891 * 14 13 11 39 39 H 1.08997 * 110.66402 * 157.73301 * 16 5 4 40 40 H 1.08998 * 110.66769 * 280.85712 * 16 5 4 41 41 H 1.08994 * 109.46861 * 294.99843 * 19 17 2 42 42 H 1.09006 * 109.46771 * 54.99904 * 19 17 2 43 43 H 0.97002 * 119.99709 * 0.02562 * 20 19 17 44 44 H 0.96996 * 119.99900 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 -1.2229 5 7 2.8296 -1.9204 -0.7104 6 6 3.0607 -3.0877 -1.3433 7 8 3.7122 -3.9567 -0.7972 8 6 2.5223 -3.3110 -2.7007 9 6 2.6868 -4.4771 -3.4751 10 6 2.0383 -4.2904 -4.6577 11 7 1.4970 -3.0453 -4.6297 12 7 1.7996 -2.4565 -3.3975 13 6 0.8066 -2.8178 -5.9122 14 6 1.3761 -3.9491 -6.7997 15 8 1.7646 -4.9347 -5.8252 16 6 3.2863 -1.5349 0.6448 17 6 2.0694 -0.7722 1.2262 18 1 1.3209 -1.4693 1.6031 19 6 2.5073 0.1964 2.3267 20 7 2.9002 -0.5620 3.5169 21 6 3.3319 0.0968 4.6369 22 1 3.3824 1.1756 4.6431 23 6 3.7047 -0.6219 5.7645 24 7 3.6437 -1.9366 5.7569 25 14 4.2929 0.2769 7.2928 26 1 3.2188 1.1787 7.7810 27 1 4.6278 -0.7108 8.3498 28 1 5.4993 1.0775 6.9626 29 1 -0.3634 -1.0276 0.0123 30 1 -0.3633 0.5243 0.8840 31 1 -0.3633 0.5033 -0.8959 32 1 2.7165 -0.1222 -1.8112 33 1 1.2352 -1.1172 -1.8377 34 1 3.2310 -5.3628 -3.1819 35 1 1.0604 -1.8397 -6.3209 36 1 -0.2721 -2.9224 -5.7957 37 1 2.2405 -3.6008 -7.3651 38 1 0.6112 -4.3446 -7.4680 39 1 3.5072 -2.4193 1.2424 40 1 4.1571 -0.8819 0.5861 41 1 3.3541 0.7862 1.9757 42 1 1.6800 0.8610 2.5761 43 1 2.8552 -1.5310 3.5112 44 1 3.9045 -2.4388 6.5446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106256009.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:40 Heat of formation + Delta-G solvation = 56.688435 kcal Electronic energy + Delta-G solvation = -26746.942171 eV Core-core repulsion = 22896.202913 eV Total energy + Delta-G solvation = -3850.739258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.62845 -40.11109 -38.80149 -37.64138 -34.61452 -33.67875 -32.79223 -31.35806 -30.47193 -29.20684 -28.90649 -26.48047 -25.80550 -24.33315 -23.33928 -22.37354 -21.70076 -21.01902 -19.83676 -19.24168 -17.98979 -17.37981 -16.88864 -16.71613 -16.07506 -15.88200 -15.46088 -15.12041 -14.81021 -14.49884 -14.26435 -14.01021 -13.81929 -13.43475 -13.18571 -13.18008 -12.94633 -12.85394 -12.77224 -12.32409 -12.08812 -11.81253 -11.73143 -11.34103 -11.07393 -10.93695 -10.79776 -10.50446 -10.40442 -10.29489 -10.07701 -9.96544 -9.61163 -9.53543 -8.84536 -8.82530 -8.54019 -6.87353 -5.70285 -2.99641 1.06914 1.47780 1.83613 2.37176 3.04119 3.32555 3.44856 3.48308 3.52360 3.53902 4.01650 4.08197 4.34364 4.52916 4.61915 4.69815 4.71183 4.79642 4.92772 4.97494 5.04281 5.27308 5.39531 5.55546 5.58711 5.62617 5.63978 5.69407 5.86402 5.91850 6.05136 6.07151 6.14264 6.19600 6.26441 6.28923 6.45650 6.48552 6.58323 6.76884 6.90374 7.14236 7.59215 7.74271 8.15126 8.47939 9.58977 10.16585 10.51005 11.52304 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028584 B = 0.002501 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.349625 B =11193.994473 C =11938.536410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 H 0.087 0.913 4 C 0.104 3.896 5 N -0.605 5.605 6 C 0.614 3.386 7 O -0.520 6.520 8 C 0.065 3.935 9 C -0.212 4.212 10 C 0.232 3.768 11 N -0.416 5.416 12 N -0.215 5.215 13 C 0.098 3.902 14 C 0.041 3.959 15 O -0.279 6.279 16 C 0.116 3.884 17 C -0.102 4.102 18 H 0.085 0.915 19 C 0.165 3.835 20 N -0.733 5.733 21 C -0.241 4.241 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.907 3.093 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.166 0.834 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.130 0.870 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.022 0.978 42 H 0.023 0.977 43 H 0.385 0.615 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.170 -0.253 -29.567 30.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 H 0.105 0.895 4 C -0.019 4.019 5 N -0.338 5.338 6 C 0.399 3.601 7 O -0.393 6.393 8 C -0.102 4.102 9 C -0.242 4.242 10 C 0.065 3.935 11 N -0.213 5.213 12 N -0.045 5.045 13 C -0.023 4.023 14 C -0.035 4.035 15 O -0.186 6.186 16 C -0.005 4.005 17 C -0.122 4.122 18 H 0.103 0.897 19 C 0.037 3.963 20 N -0.377 5.377 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.184 0.816 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.148 0.852 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.039 0.961 42 H 0.041 0.959 43 H 0.218 0.782 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.343 0.318 -29.341 30.505 hybrid contribution 0.492 -0.435 0.584 0.879 sum -7.851 -0.116 -28.756 29.809 Atomic orbital electron populations 1.21814 0.94247 1.01909 1.01728 1.22106 0.96340 0.99710 0.93877 0.89469 1.22397 0.96097 0.86977 0.96414 1.48651 1.52548 1.14117 1.18513 1.16330 0.80291 0.81232 0.82247 1.90857 1.40050 1.42795 1.65617 1.21960 0.99322 0.93035 0.95857 1.20071 1.10419 1.02165 0.91532 1.20742 0.97240 0.85178 0.90360 1.50802 1.43360 1.13631 1.13535 1.77809 1.19031 1.18905 0.88753 1.23238 0.98561 1.01956 0.78507 1.24455 1.01644 0.86218 0.91166 1.87150 1.83865 1.30002 1.17573 1.22661 0.96962 1.00344 0.80581 1.22591 0.96972 0.97910 0.94700 0.89712 1.20625 0.96587 0.92721 0.86328 1.42373 1.79252 1.05964 1.10138 1.19157 1.36069 0.91194 0.90811 0.91254 1.24752 1.02406 0.95485 0.98301 1.69649 1.54244 1.04516 1.29576 0.86273 0.78574 0.78335 0.83011 1.21339 1.21724 1.21289 0.92711 0.91915 0.92845 0.91629 0.89197 0.81609 0.86926 0.87680 0.88784 0.85175 0.88950 0.90296 0.96055 0.95878 0.78170 0.93425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.90 37.16 0.33 -1.25 16 2 C -0.10 -1.28 3.17 -89.24 -0.28 -1.56 16 3 H 0.09 1.02 7.85 -51.93 -0.41 0.62 16 4 C 0.10 1.32 5.93 -2.98 -0.02 1.31 16 5 N -0.61 -9.44 3.29 -170.92 -0.56 -10.01 16 6 C 0.61 10.34 7.90 -12.38 -0.10 10.24 16 7 O -0.52 -10.38 17.10 5.31 0.09 -10.29 16 8 C 0.07 0.94 6.95 -82.96 -0.58 0.36 16 9 C -0.21 -2.78 10.60 -39.30 -0.42 -3.20 16 10 C 0.23 2.57 8.32 -16.54 -0.14 2.43 16 11 N -0.42 -4.23 5.01 -59.63 -0.30 -4.53 16 12 N -0.21 -2.76 9.88 33.32 0.33 -2.43 16 13 C 0.10 0.43 8.10 -2.67 -0.02 0.41 16 14 C 0.04 0.13 8.08 38.03 0.31 0.44 16 15 O -0.28 -2.38 11.19 -20.14 -0.23 -2.60 16 16 C 0.12 1.97 6.46 -2.13 -0.01 1.96 16 17 C -0.10 -1.67 2.62 -88.74 -0.23 -1.90 16 18 H 0.08 1.49 7.86 -51.93 -0.41 1.08 16 19 C 0.17 3.25 5.58 -4.04 -0.02 3.23 16 20 N -0.73 -18.63 5.52 -59.91 -0.33 -18.96 16 21 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16 25 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.09 1.11 5.69 -51.93 -0.30 0.82 16 34 H 0.17 2.05 8.06 -52.48 -0.42 1.63 16 35 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 38 H 0.13 -0.01 8.14 -51.93 -0.42 -0.43 16 39 H 0.09 1.81 7.85 -51.93 -0.41 1.40 16 40 H 0.08 1.33 7.95 -51.93 -0.41 0.92 16 41 H 0.02 0.42 8.00 -51.93 -0.42 0.01 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.38 10.39 7.67 -40.82 -0.31 10.08 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -35.82 364.38 -7.67 -43.48 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.43 Total: 5.14 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -1.43 Total: 5.03 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: -0.14 Total: -63.95 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.13 Total: -12.90 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.82 -7.67 -43.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106256009.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.173 kcal (2) G-P(sol) polarization free energy of solvation -35.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds