Wall clock time and date at job start Fri Apr 10 2020 18:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.29304 * 2 1 4 4 C 1.54003 * 110.32182 * 237.86555 * 2 1 3 5 5 N 1.47486 * 107.08454 * 242.31216 * 4 2 1 6 6 C 1.34781 * 127.03579 * 154.29172 * 5 4 2 7 7 O 1.21565 * 120.00125 * 180.02562 * 6 5 4 8 8 C 1.47728 * 119.99551 * 0.02562 * 6 5 4 9 9 C 1.40944 * 125.97118 * 179.97438 * 8 6 5 10 10 C 1.36166 * 107.94906 * 179.76819 * 9 8 6 11 11 N 1.35799 * 107.31567 * 0.54153 * 10 9 8 12 12 N 1.31837 * 125.97531 * 359.69395 * 8 6 5 13 13 C 1.47422 * 108.07335 * 179.17570 * 11 10 9 14 14 C 1.54654 * 102.34819 * 344.68677 * 13 11 10 15 15 O 1.36126 * 140.87746 * 180.69230 * 10 9 8 16 16 C 1.48113 * 105.93573 * 334.55302 * 5 4 2 17 17 C 1.54620 * 110.41495 * 122.20144 * 2 1 3 18 18 H 1.09004 * 110.73930 * 22.43376 * 17 2 1 19 19 C 1.53007 * 110.73501 * 259.29970 * 17 2 1 20 20 N 1.46499 * 109.47106 * 174.99432 * 19 17 2 21 21 C 1.36933 * 119.99935 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00290 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99686 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00305 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99646 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47335 * 59.99598 * 25 23 21 27 27 H 1.48493 * 109.46905 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47093 * 299.99777 * 25 23 21 29 29 H 1.09001 * 109.47456 * 180.68457 * 1 2 3 30 30 H 1.09006 * 109.46648 * 300.67406 * 1 2 3 31 31 H 1.08996 * 109.47142 * 60.67595 * 1 2 3 32 32 H 1.08999 * 109.91434 * 122.95292 * 4 2 1 33 33 H 1.09002 * 110.07717 * 1.75872 * 4 2 1 34 34 H 1.08005 * 126.02271 * 359.79550 * 9 8 6 35 35 H 1.09002 * 110.83066 * 226.47774 * 13 11 10 36 36 H 1.09003 * 110.83085 * 102.90317 * 13 11 10 37 37 H 1.08999 * 110.85412 * 266.66368 * 14 13 11 38 38 H 1.09004 * 111.02516 * 143.10891 * 14 13 11 39 39 H 1.08997 * 110.66402 * 157.73301 * 16 5 4 40 40 H 1.08998 * 110.66769 * 280.85712 * 16 5 4 41 41 H 1.08994 * 109.46861 * 294.99843 * 19 17 2 42 42 H 1.09006 * 109.46771 * 54.99904 * 19 17 2 43 43 H 0.97002 * 119.99709 * 0.02562 * 20 19 17 44 44 H 0.96996 * 119.99900 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 -1.2229 5 7 2.8296 -1.9204 -0.7104 6 6 3.0607 -3.0877 -1.3433 7 8 3.7122 -3.9567 -0.7972 8 6 2.5223 -3.3110 -2.7007 9 6 2.6868 -4.4771 -3.4751 10 6 2.0383 -4.2904 -4.6577 11 7 1.4970 -3.0453 -4.6297 12 7 1.7996 -2.4565 -3.3975 13 6 0.8066 -2.8178 -5.9122 14 6 1.3761 -3.9491 -6.7997 15 8 1.7646 -4.9347 -5.8252 16 6 3.2863 -1.5349 0.6448 17 6 2.0694 -0.7722 1.2262 18 1 1.3209 -1.4693 1.6031 19 6 2.5073 0.1964 2.3267 20 7 2.9002 -0.5620 3.5169 21 6 3.3319 0.0968 4.6369 22 1 3.3824 1.1756 4.6431 23 6 3.7047 -0.6219 5.7645 24 7 3.6437 -1.9366 5.7569 25 14 4.2929 0.2769 7.2928 26 1 3.2188 1.1787 7.7810 27 1 4.6278 -0.7108 8.3498 28 1 5.4993 1.0775 6.9626 29 1 -0.3634 -1.0276 0.0123 30 1 -0.3633 0.5243 0.8840 31 1 -0.3633 0.5033 -0.8959 32 1 2.7165 -0.1222 -1.8112 33 1 1.2352 -1.1172 -1.8377 34 1 3.2310 -5.3628 -3.1819 35 1 1.0604 -1.8397 -6.3209 36 1 -0.2721 -2.9224 -5.7957 37 1 2.2405 -3.6008 -7.3651 38 1 0.6112 -4.3446 -7.4680 39 1 3.5072 -2.4193 1.2424 40 1 4.1571 -0.8819 0.5861 41 1 3.3541 0.7862 1.9757 42 1 1.6800 0.8610 2.5761 43 1 2.8552 -1.5310 3.5112 44 1 3.9045 -2.4388 6.5446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106256009.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:39 Heat of formation + Delta-G solvation = 29.549949 kcal Electronic energy + Delta-G solvation = -26748.118984 eV Core-core repulsion = 22896.202913 eV Total energy + Delta-G solvation = -3851.916071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.39432 -41.29767 -39.69312 -38.90492 -36.45405 -34.44287 -34.10685 -33.04840 -31.44740 -30.42673 -29.92112 -27.63864 -27.19460 -25.54048 -24.57826 -23.49190 -22.52067 -22.34016 -21.12524 -20.36051 -19.13439 -18.63502 -18.11502 -17.46679 -17.36569 -16.85703 -16.52468 -16.44031 -15.99403 -15.75002 -15.39760 -15.19061 -15.04791 -14.84165 -14.51784 -14.22271 -14.06530 -13.98164 -13.66077 -13.41953 -13.19900 -13.12098 -12.90496 -12.70240 -12.49390 -12.26513 -12.21030 -12.03344 -11.92259 -11.76178 -11.58123 -11.40449 -11.34718 -10.90261 -10.33107 -9.82347 -9.69145 -8.97698 -7.91884 -5.21393 0.07413 0.77572 0.88821 1.48246 1.51995 1.54605 1.58101 2.07710 2.13554 2.58169 2.95386 3.27957 3.41195 3.50825 3.57183 3.76994 3.82627 3.86239 4.05297 4.20887 4.23924 4.25564 4.38635 4.42763 4.47966 4.52770 4.56724 4.63695 4.67579 4.76194 4.80220 4.85328 4.88380 4.97923 5.07733 5.19125 5.20673 5.28494 5.33803 5.51005 5.54898 5.76241 6.24391 6.29265 6.38170 6.87081 7.35281 8.11732 8.33673 9.31692 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028584 B = 0.002501 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.349625 B =11193.994473 C =11938.536410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 H 0.107 0.893 4 C 0.108 3.892 5 N -0.604 5.604 6 C 0.609 3.391 7 O -0.567 6.567 8 C 0.045 3.955 9 C -0.242 4.242 10 C 0.243 3.757 11 N -0.407 5.407 12 N -0.217 5.217 13 C 0.088 3.912 14 C 0.039 3.961 15 O -0.290 6.290 16 C 0.118 3.882 17 C -0.092 4.092 18 H 0.067 0.933 19 C 0.166 3.834 20 N -0.748 5.748 21 C -0.243 4.243 22 H 0.080 0.920 23 C -0.080 4.080 24 N -0.973 5.973 25 Si 0.976 3.024 26 H -0.275 1.275 27 H -0.299 1.299 28 H -0.277 1.277 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.158 0.842 35 H 0.140 0.860 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.170 0.830 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.031 0.969 42 H 0.033 0.967 43 H 0.371 0.629 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.746 2.133 -32.683 34.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.109 4.109 3 H 0.126 0.874 4 C -0.014 4.014 5 N -0.336 5.336 6 C 0.396 3.604 7 O -0.444 6.444 8 C -0.120 4.120 9 C -0.272 4.272 10 C 0.074 3.926 11 N -0.206 5.206 12 N -0.049 5.049 13 C -0.030 4.030 14 C -0.036 4.036 15 O -0.197 6.197 16 C -0.004 4.004 17 C -0.112 4.112 18 H 0.086 0.914 19 C 0.040 3.960 20 N -0.391 5.391 21 C -0.374 4.374 22 H 0.098 0.902 23 C -0.272 4.272 24 N -0.623 5.623 25 Si 0.804 3.196 26 H -0.201 1.201 27 H -0.225 1.225 28 H -0.203 1.203 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.117 0.883 34 H 0.176 0.824 35 H 0.158 0.842 36 H 0.144 0.856 37 H 0.129 0.871 38 H 0.187 0.813 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.203 0.797 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.959 2.780 -32.529 34.133 hybrid contribution 0.894 -1.152 1.310 1.960 sum -9.065 1.628 -31.219 32.549 Atomic orbital electron populations 1.21796 0.92846 1.01659 1.03022 1.22111 0.97423 0.99964 0.91390 0.87448 1.22567 0.96364 0.85972 0.96495 1.48701 1.52417 1.14708 1.17780 1.16738 0.79696 0.80840 0.83168 1.90813 1.42245 1.44298 1.67079 1.21473 1.01165 0.94241 0.95085 1.20083 1.12087 1.02091 0.92926 1.20610 0.96011 0.85468 0.90518 1.51229 1.42446 1.13072 1.13806 1.77640 1.18622 1.18738 0.89890 1.23855 0.99448 1.03856 0.75889 1.24970 1.03524 0.84878 0.90205 1.87167 1.83569 1.31633 1.17352 1.22477 0.97641 0.98925 0.81377 1.22403 0.96149 0.97325 0.95294 0.91416 1.20787 0.96938 0.93029 0.85274 1.42635 1.79316 1.05706 1.11415 1.19629 1.34457 0.91837 0.91522 0.90163 1.25631 1.03662 0.96248 1.01682 1.69835 1.56218 1.06190 1.30102 0.85178 0.78420 0.77032 0.78929 1.20142 1.22514 1.20273 0.93746 0.92149 0.90030 0.89783 0.88340 0.82394 0.84238 0.85562 0.87096 0.81268 0.92651 0.90039 0.95115 0.94869 0.79727 0.94131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.90 71.98 0.64 -2.11 16 2 C -0.09 -2.09 3.17 -9.90 -0.03 -2.12 16 3 H 0.11 2.15 7.85 -2.39 -0.02 2.13 16 4 C 0.11 2.56 5.93 86.53 0.51 3.08 16 5 N -0.60 -19.35 3.29 -812.93 -2.67 -22.02 16 6 C 0.61 21.67 7.90 86.75 0.69 22.36 16 7 O -0.57 -24.62 17.10 -3.92 -0.07 -24.68 16 8 C 0.05 1.34 6.95 42.32 0.29 1.64 16 9 C -0.24 -6.58 10.60 22.45 0.24 -6.34 16 10 C 0.24 5.10 8.32 83.60 0.70 5.79 16 11 N -0.41 -7.31 5.01 -453.34 -2.27 -9.58 16 12 N -0.22 -5.29 9.88 -48.51 -0.48 -5.77 16 13 C 0.09 0.40 8.10 86.77 0.70 1.10 16 14 C 0.04 0.09 8.08 72.55 0.59 0.67 16 15 O -0.29 -4.26 11.19 -94.99 -1.06 -5.32 16 16 C 0.12 4.21 6.46 86.73 0.56 4.77 16 17 C -0.09 -3.02 2.62 -9.58 -0.03 -3.05 16 18 H 0.07 2.47 7.86 -2.38 -0.02 2.45 16 19 C 0.17 6.47 5.58 86.38 0.48 6.96 16 20 N -0.75 -38.83 5.52 -343.44 -1.90 -40.73 16 21 C -0.24 -13.75 9.99 84.04 0.84 -12.91 16 22 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 23 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 24 N -0.97 -61.96 13.06 21.65 0.28 -61.68 16 25 Si 0.98 47.19 29.55 68.60 2.03 49.22 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 27 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 28 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.10 2.23 5.69 -2.39 -0.01 2.21 16 34 H 0.16 4.31 8.06 -2.91 -0.02 4.29 16 35 H 0.14 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H 0.17 -0.92 8.14 -2.38 -0.02 -0.94 16 39 H 0.05 2.37 7.85 -2.39 -0.02 2.36 16 40 H 0.08 2.83 7.95 -2.39 -0.02 2.81 16 41 H 0.03 1.17 8.00 -2.39 -0.02 1.15 16 42 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.37 21.02 7.67 -92.71 -0.71 20.31 16 44 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -81.82 364.38 0.82 -81.00 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.31 Total: 24.01 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 6.65 Total: 15.56 kcal Atomic # 7 Polarization: -132.75 SS G_CDS: -7.04 Total: -139.78 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -1.13 Total: -30.01 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -81.82 0.82 -81.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106256009.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.548 kcal (2) G-P(sol) polarization free energy of solvation -81.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds