Wall clock time and date at job start Fri Apr 10 2020 18:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35735 * 116.99956 * 2 1 4 4 C 1.39446 * 120.80331 * 179.97438 * 3 2 1 5 5 N 1.31960 * 119.07880 * 180.02562 * 4 3 2 6 6 C 1.32540 * 120.83787 * 0.02562 * 5 4 3 7 7 C 1.48291 * 119.11334 * 179.97438 * 6 5 4 8 8 O 1.21503 * 119.99967 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99880 * 179.97438 * 7 6 5 10 10 C 1.47428 * 125.64685 * 179.97438 * 9 7 6 11 11 C 1.55118 * 104.94414 * 204.03794 * 10 9 7 12 12 H 1.09004 * 110.93289 * 81.21359 * 11 10 9 13 13 C 1.52998 * 111.16515 * 205.12843 * 11 10 9 14 14 N 1.46498 * 109.47567 * 287.17037 * 13 11 10 15 15 C 1.36929 * 120.00252 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00464 * 0.02562 * 15 14 13 17 17 C 1.38821 * 119.99882 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99646 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 119.99965 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47263 * 89.99743 * 19 17 15 21 21 H 1.48499 * 109.47171 * 209.99736 * 19 17 15 22 22 H 1.48507 * 109.47399 * 329.99854 * 19 17 15 23 23 C 1.55161 * 101.48603 * 323.22445 * 11 10 9 24 24 H 1.09006 * 110.71563 * 276.82692 * 23 11 10 25 25 C 1.52997 * 110.72190 * 153.73413 * 23 11 10 26 26 C 1.47026 * 125.65202 * 0.02562 * 9 7 6 27 27 N 1.32547 * 121.77530 * 0.25836 * 6 5 4 28 28 C 1.31959 * 120.83381 * 359.47163 * 27 6 5 29 29 H 1.08999 * 109.47034 * 299.99517 * 1 2 3 30 30 H 1.09003 * 109.46938 * 59.99747 * 1 2 3 31 31 H 1.08997 * 109.46805 * 179.97438 * 1 2 3 32 32 H 1.07996 * 120.46518 * 0.05066 * 4 3 2 33 33 H 1.09003 * 110.36619 * 323.00008 * 10 9 7 34 34 H 1.09004 * 110.37083 * 85.21493 * 10 9 7 35 35 H 1.09000 * 109.46778 * 47.17364 * 13 11 10 36 36 H 1.09001 * 109.46741 * 167.16807 * 13 11 10 37 37 H 0.97008 * 119.99498 * 0.02562 * 14 13 11 38 38 H 0.96996 * 119.99822 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.47153 * 302.43722 * 25 23 11 40 40 H 1.09001 * 109.46832 * 182.43913 * 25 23 11 41 41 H 1.09004 * 109.47261 * 62.43894 * 25 23 11 42 42 H 1.09001 * 109.87716 * 59.49052 * 26 9 7 43 43 H 1.08997 * 110.00821 * 298.40223 * 26 9 7 44 44 H 1.07997 * 120.45635 * 180.25756 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 3.4367 1.3019 0.0005 5 7 4.0001 2.4952 0.0010 6 6 3.2611 3.5955 0.0015 7 6 3.9343 4.9167 0.0027 8 8 5.1477 4.9803 0.0026 9 7 3.2002 6.0471 0.0027 10 6 3.7370 7.4201 0.0043 11 6 2.6072 8.2906 0.6141 12 1 2.6154 8.2326 1.7026 13 6 2.7135 9.7426 0.1437 14 7 3.8490 10.3888 0.8063 15 6 4.1423 11.6994 0.5392 16 1 3.5364 12.2569 -0.1597 17 6 5.2180 12.3119 1.1676 18 7 5.5003 13.5714 0.9105 19 14 6.2657 11.3480 2.3770 20 1 7.3827 10.6918 1.6510 21 1 6.8159 12.2718 3.4012 22 1 5.4313 10.3139 3.0402 23 6 1.3420 7.6080 0.0304 24 1 1.1369 7.9724 -0.9763 25 6 0.1347 7.8351 0.9424 26 6 1.7315 6.1150 0.0022 27 7 1.9365 3.5466 0.0066 28 6 1.3024 2.3894 0.0010 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 4.0448 0.4094 0.0001 33 1 4.6345 7.4759 0.6203 34 1 3.9557 7.7432 -1.0136 35 1 2.8621 9.7647 -0.9359 36 1 1.7956 10.2740 0.3950 37 1 4.3935 9.8880 1.4338 38 1 6.2517 13.9995 1.3498 39 1 0.3555 7.4532 1.9392 40 1 -0.7309 7.3118 0.5363 41 1 -0.0804 8.9021 1.0015 42 1 1.3369 5.6121 0.8850 43 1 1.3368 5.6459 -0.8990 44 1 0.2229 2.3568 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106403602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:48 Heat of formation + Delta-G solvation = 10.212012 kcal Electronic energy + Delta-G solvation = -26695.080721 eV Core-core repulsion = 22842.326094 eV Total energy + Delta-G solvation = -3852.754627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.90123 -40.09543 -39.06216 -37.79892 -34.96364 -34.33209 -32.91927 -31.77413 -31.46558 -29.57609 -28.42929 -26.59570 -26.00790 -25.17836 -24.32034 -22.73110 -21.18990 -20.37146 -20.08391 -18.82201 -18.63934 -17.90404 -17.42573 -16.78264 -16.16420 -15.96197 -15.45776 -15.18965 -14.72512 -14.53758 -14.20744 -14.15392 -14.06642 -13.79855 -13.22861 -13.11434 -12.92327 -12.70910 -12.37564 -12.32236 -12.19027 -12.09906 -11.84172 -11.50426 -11.42618 -11.35410 -10.90311 -10.62227 -10.50894 -10.28762 -10.12088 -10.06341 -9.66520 -9.54921 -9.31433 -8.86369 -8.61183 -7.20490 -5.73493 -3.09152 0.07306 0.48162 2.30592 2.43555 2.60587 3.43142 3.46979 3.47307 3.48276 3.51292 3.61720 3.87728 4.11125 4.41320 4.44799 4.48022 4.60838 4.63778 4.72009 4.82308 4.87086 5.08380 5.30038 5.40409 5.45177 5.49627 5.57444 5.63596 5.71215 5.75074 5.86682 5.97405 6.06365 6.13480 6.14954 6.17380 6.24344 6.38032 6.48654 6.64134 6.74990 7.30888 7.49274 8.01840 8.04302 8.45382 9.24187 9.96831 10.16006 11.44807 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022853 B = 0.002769 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.928984 B =10109.667315 C =11012.206585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.298 6.298 3 C 0.042 3.958 4 C 0.124 3.876 5 N -0.427 5.427 6 C 0.249 3.751 7 C 0.596 3.404 8 O -0.507 6.507 9 N -0.598 5.598 10 C 0.114 3.886 11 C -0.106 4.106 12 H 0.086 0.914 13 C 0.171 3.829 14 N -0.757 5.757 15 C -0.244 4.244 16 H 0.090 0.910 17 C 0.005 3.995 18 N -0.934 5.934 19 Si 0.883 3.117 20 H -0.282 1.282 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.103 4.103 24 H 0.088 0.912 25 C -0.138 4.138 26 C 0.122 3.878 27 N -0.449 5.449 28 C 0.061 3.939 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.185 0.815 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.031 0.969 36 H 0.034 0.966 37 H 0.361 0.639 38 H 0.259 0.741 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.497 -29.515 -2.097 33.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.208 6.208 3 C -0.009 4.009 4 C -0.046 4.046 5 N -0.142 5.142 6 C -0.020 4.020 7 C 0.379 3.621 8 O -0.379 6.379 9 N -0.331 5.331 10 C -0.008 4.008 11 C -0.125 4.125 12 H 0.104 0.896 13 C 0.043 3.957 14 N -0.402 5.402 15 C -0.374 4.374 16 H 0.108 0.892 17 C -0.191 4.191 18 N -0.582 5.582 19 Si 0.713 3.287 20 H -0.209 1.209 21 H -0.218 1.218 22 H -0.203 1.203 23 C -0.122 4.122 24 H 0.106 0.894 25 C -0.196 4.196 26 C -0.001 4.001 27 N -0.166 5.166 28 C -0.107 4.107 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.128 0.872 32 H 0.201 0.799 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.194 0.806 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -15.243 -28.609 -2.195 32.490 hybrid contribution 0.018 -1.437 0.889 1.690 sum -15.225 -30.046 -1.306 33.709 Atomic orbital electron populations 1.23274 0.77199 1.05156 1.02010 1.86101 1.22311 1.24897 1.87503 1.21247 0.95261 0.86922 0.97514 1.22921 0.89308 0.96295 0.96050 1.68284 1.39774 0.97541 1.08570 1.22690 0.86063 0.94117 0.99116 1.16676 0.85700 0.81031 0.78681 1.90850 1.12374 1.85678 1.48998 1.48250 1.08199 1.05566 1.71105 1.22498 0.97786 0.78292 1.02189 1.22767 0.93092 0.95857 1.00789 0.89603 1.20558 0.91384 0.87993 0.95757 1.42731 1.33619 1.11439 1.52437 1.19033 1.10783 0.85957 1.21609 0.89182 1.24668 0.98616 0.95842 0.99971 1.69700 1.31070 1.10769 1.46663 0.86575 0.81075 0.79353 0.81703 1.20891 1.21754 1.20329 1.22313 0.95342 0.93795 1.00759 0.89374 1.21724 0.96463 1.02491 0.98898 1.22219 0.79076 0.96171 1.02625 1.68473 1.10191 1.28338 1.09615 1.23522 1.01433 0.86724 0.99018 0.91901 0.91903 0.87236 0.79859 0.89997 0.90310 0.95135 0.94845 0.80625 0.93075 0.92605 0.92618 0.91597 0.90665 0.90946 0.80551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.04 9.84 101.05 0.99 1.03 16 2 O -0.30 -1.69 10.51 -18.91 -0.20 -1.89 16 3 C 0.04 0.31 6.74 -38.68 -0.26 0.05 16 4 C 0.12 1.13 11.28 -17.05 -0.19 0.93 16 5 N -0.43 -5.63 10.11 -11.03 -0.11 -5.75 16 6 C 0.25 3.39 7.57 -157.04 -1.19 2.20 16 7 C 0.60 9.77 7.87 -12.13 -0.10 9.68 16 8 O -0.51 -10.14 17.11 5.36 0.09 -10.05 16 9 N -0.60 -8.77 3.33 -171.33 -0.57 -9.34 16 10 C 0.11 1.82 6.34 -2.41 -0.02 1.80 16 11 C -0.11 -1.57 2.50 -88.36 -0.22 -1.79 16 12 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 13 C 0.17 3.15 5.72 -4.04 -0.02 3.13 16 14 N -0.76 -17.92 5.36 -59.91 -0.32 -18.25 16 15 C -0.24 -6.94 10.47 -15.06 -0.16 -7.10 16 16 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 17 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 18 N -0.93 -29.69 13.97 55.49 0.78 -28.92 16 19 Si 0.88 22.73 27.73 -169.99 -4.71 18.01 16 20 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 22 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 23 C -0.10 -1.16 3.01 -88.79 -0.27 -1.43 16 24 H 0.09 0.96 8.04 -51.93 -0.42 0.54 16 25 C -0.14 -1.33 9.14 37.16 0.34 -0.99 16 26 C 0.12 1.38 4.99 -3.06 -0.02 1.37 16 27 N -0.45 -4.77 6.83 -11.03 -0.08 -4.84 16 28 C 0.06 0.45 10.31 -17.05 -0.18 0.27 16 29 H 0.06 0.06 7.71 -51.93 -0.40 -0.34 16 30 H 0.06 0.06 7.71 -51.93 -0.40 -0.34 16 31 H 0.11 0.03 8.14 -51.93 -0.42 -0.39 16 32 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.08 1.46 8.04 -51.93 -0.42 1.05 16 34 H 0.08 1.28 7.91 -51.93 -0.41 0.87 16 35 H 0.03 0.57 7.97 -51.93 -0.41 0.16 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.36 8.49 5.53 -40.82 -0.23 8.26 16 38 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 39 H 0.05 0.54 8.12 -51.93 -0.42 0.12 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.81 7.05 -51.93 -0.37 0.45 16 43 H 0.07 0.76 7.53 -51.93 -0.39 0.37 16 44 H 0.18 0.63 6.47 -52.49 -0.34 0.29 16 LS Contribution 364.06 15.07 5.49 5.49 Total: -1.00 -36.52 364.06 -7.34 -43.86 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.33 Total: 2.48 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -1.37 Total: 9.20 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: -0.30 Total: -67.09 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -0.11 Total: -11.94 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.71 Total: 18.01 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.52 -7.34 -43.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106403602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.071 kcal (2) G-P(sol) polarization free energy of solvation -36.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds