Wall clock time and date at job start Fri Apr 10 2020 18:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35735 * 116.99956 * 2 1 4 4 C 1.39446 * 120.80331 * 179.97438 * 3 2 1 5 5 N 1.31960 * 119.07880 * 180.02562 * 4 3 2 6 6 C 1.32540 * 120.83787 * 0.02562 * 5 4 3 7 7 C 1.48291 * 119.11334 * 179.97438 * 6 5 4 8 8 O 1.21503 * 119.99967 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99880 * 179.97438 * 7 6 5 10 10 C 1.47428 * 125.64685 * 179.97438 * 9 7 6 11 11 C 1.55118 * 104.94414 * 204.03794 * 10 9 7 12 12 H 1.09004 * 110.93289 * 81.21359 * 11 10 9 13 13 C 1.52998 * 111.16515 * 205.12843 * 11 10 9 14 14 N 1.46498 * 109.47567 * 287.17037 * 13 11 10 15 15 C 1.36929 * 120.00252 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00464 * 0.02562 * 15 14 13 17 17 C 1.38821 * 119.99882 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99646 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 119.99965 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47263 * 89.99743 * 19 17 15 21 21 H 1.48499 * 109.47171 * 209.99736 * 19 17 15 22 22 H 1.48507 * 109.47399 * 329.99854 * 19 17 15 23 23 C 1.55161 * 101.48603 * 323.22445 * 11 10 9 24 24 H 1.09006 * 110.71563 * 276.82692 * 23 11 10 25 25 C 1.52997 * 110.72190 * 153.73413 * 23 11 10 26 26 C 1.47026 * 125.65202 * 0.02562 * 9 7 6 27 27 N 1.32547 * 121.77530 * 0.25836 * 6 5 4 28 28 C 1.31959 * 120.83381 * 359.47163 * 27 6 5 29 29 H 1.08999 * 109.47034 * 299.99517 * 1 2 3 30 30 H 1.09003 * 109.46938 * 59.99747 * 1 2 3 31 31 H 1.08997 * 109.46805 * 179.97438 * 1 2 3 32 32 H 1.07996 * 120.46518 * 0.05066 * 4 3 2 33 33 H 1.09003 * 110.36619 * 323.00008 * 10 9 7 34 34 H 1.09004 * 110.37083 * 85.21493 * 10 9 7 35 35 H 1.09000 * 109.46778 * 47.17364 * 13 11 10 36 36 H 1.09001 * 109.46741 * 167.16807 * 13 11 10 37 37 H 0.97008 * 119.99498 * 0.02562 * 14 13 11 38 38 H 0.96996 * 119.99822 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.47153 * 302.43722 * 25 23 11 40 40 H 1.09001 * 109.46832 * 182.43913 * 25 23 11 41 41 H 1.09004 * 109.47261 * 62.43894 * 25 23 11 42 42 H 1.09001 * 109.87716 * 59.49052 * 26 9 7 43 43 H 1.08997 * 110.00821 * 298.40223 * 26 9 7 44 44 H 1.07997 * 120.45635 * 180.25756 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 3.4367 1.3019 0.0005 5 7 4.0001 2.4952 0.0010 6 6 3.2611 3.5955 0.0015 7 6 3.9343 4.9167 0.0027 8 8 5.1477 4.9803 0.0026 9 7 3.2002 6.0471 0.0027 10 6 3.7370 7.4201 0.0043 11 6 2.6072 8.2906 0.6141 12 1 2.6154 8.2326 1.7026 13 6 2.7135 9.7426 0.1437 14 7 3.8490 10.3888 0.8063 15 6 4.1423 11.6994 0.5392 16 1 3.5364 12.2569 -0.1597 17 6 5.2180 12.3119 1.1676 18 7 5.5003 13.5714 0.9105 19 14 6.2657 11.3480 2.3770 20 1 7.3827 10.6918 1.6510 21 1 6.8159 12.2718 3.4012 22 1 5.4313 10.3139 3.0402 23 6 1.3420 7.6080 0.0304 24 1 1.1369 7.9724 -0.9763 25 6 0.1347 7.8351 0.9424 26 6 1.7315 6.1150 0.0022 27 7 1.9365 3.5466 0.0066 28 6 1.3024 2.3894 0.0010 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 4.0448 0.4094 0.0001 33 1 4.6345 7.4759 0.6203 34 1 3.9557 7.7432 -1.0136 35 1 2.8621 9.7647 -0.9359 36 1 1.7956 10.2740 0.3950 37 1 4.3935 9.8880 1.4338 38 1 6.2517 13.9995 1.3498 39 1 0.3555 7.4532 1.9392 40 1 -0.7309 7.3118 0.5363 41 1 -0.0804 8.9021 1.0015 42 1 1.3369 5.6121 0.8850 43 1 1.3368 5.6459 -0.8990 44 1 0.2229 2.3568 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106403602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:47 Heat of formation + Delta-G solvation = -16.770299 kcal Electronic energy + Delta-G solvation = -26696.250762 eV Core-core repulsion = 22842.326094 eV Total energy + Delta-G solvation = -3853.924668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.63195 -41.12220 -39.71535 -38.97427 -36.65635 -35.22528 -34.22225 -33.29121 -32.47529 -30.97392 -28.88285 -27.62929 -27.21318 -25.96307 -25.27233 -24.30925 -22.57769 -21.35139 -21.29684 -19.71424 -19.35919 -19.27000 -18.66567 -17.49260 -17.21913 -16.90890 -16.59979 -16.29538 -15.84147 -15.61379 -15.41655 -15.24976 -15.09440 -14.74960 -14.66262 -14.39536 -14.05769 -13.87131 -13.65376 -13.42973 -13.18370 -13.00313 -12.84975 -12.56159 -12.50428 -12.44044 -12.24124 -12.13956 -11.85548 -11.79455 -11.59639 -11.41592 -11.28729 -10.98441 -10.41052 -9.96794 -9.71620 -9.29086 -8.03198 -5.35465 -0.70536 -0.14847 1.36206 1.39856 1.42434 1.45030 1.46664 1.97379 2.46898 2.61284 2.68086 3.01400 3.14519 3.28662 3.39140 3.55189 3.62315 3.69571 3.82103 3.99686 4.26589 4.31773 4.38051 4.40667 4.49196 4.53775 4.55048 4.73848 4.79954 4.81450 4.82645 4.87011 4.93013 5.06495 5.16902 5.20456 5.23803 5.39677 5.54170 5.54800 5.76652 5.97912 6.21021 6.25426 6.62525 6.92451 7.07685 7.84663 8.01549 9.18263 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022853 B = 0.002769 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.928984 B =10109.667315 C =11012.206585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.301 6.301 3 C 0.068 3.932 4 C 0.108 3.892 5 N -0.463 5.463 6 C 0.219 3.781 7 C 0.588 3.412 8 O -0.562 6.562 9 N -0.595 5.595 10 C 0.113 3.887 11 C -0.095 4.095 12 H 0.084 0.916 13 C 0.169 3.831 14 N -0.761 5.761 15 C -0.228 4.228 16 H 0.063 0.937 17 C -0.062 4.062 18 N -0.982 5.982 19 Si 0.947 3.053 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.254 1.254 23 C -0.091 4.091 24 H 0.097 0.903 25 C -0.134 4.134 26 C 0.126 3.874 27 N -0.447 5.447 28 C 0.065 3.935 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.128 0.872 32 H 0.206 0.794 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.031 0.969 36 H 0.042 0.958 37 H 0.363 0.637 38 H 0.257 0.743 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.865 -32.915 -1.629 38.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.211 6.211 3 C 0.015 3.985 4 C -0.060 4.060 5 N -0.178 5.178 6 C -0.048 4.048 7 C 0.374 3.626 8 O -0.438 6.438 9 N -0.328 5.328 10 C -0.010 4.010 11 C -0.114 4.114 12 H 0.103 0.897 13 C 0.043 3.957 14 N -0.407 5.407 15 C -0.359 4.359 16 H 0.081 0.919 17 C -0.253 4.253 18 N -0.633 5.633 19 Si 0.774 3.226 20 H -0.212 1.212 21 H -0.220 1.220 22 H -0.179 1.179 23 C -0.111 4.111 24 H 0.116 0.884 25 C -0.192 4.192 26 C 0.005 3.995 27 N -0.164 5.164 28 C -0.103 4.103 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.146 0.854 32 H 0.223 0.777 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.196 0.804 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -18.698 -32.068 -1.731 37.161 hybrid contribution 0.849 -0.568 0.645 1.208 sum -17.849 -32.636 -1.086 37.214 Atomic orbital electron populations 1.23690 0.74748 1.07028 1.03517 1.86129 1.24730 1.23780 1.86434 1.21191 0.94725 0.87782 0.94814 1.23283 0.90845 0.95653 0.96223 1.68156 1.41270 0.98674 1.09712 1.21980 0.87178 0.92775 1.02882 1.17218 0.85374 0.82425 0.77625 1.90794 1.14680 1.86721 1.51643 1.48310 1.09587 1.04594 1.70272 1.22362 0.97491 0.79824 1.01299 1.22595 0.94848 0.93385 1.00621 0.89746 1.20726 0.89692 0.89977 0.95326 1.42805 1.35109 1.09952 1.52804 1.19054 1.09549 0.87568 1.19753 0.91877 1.25421 1.00483 0.96849 1.02590 1.69860 1.32105 1.12701 1.48598 0.85532 0.79330 0.78308 0.79380 1.21154 1.21967 1.17885 1.22328 0.94189 0.93102 1.01460 0.88434 1.21713 0.96375 1.02450 0.98629 1.22390 0.76889 0.96246 1.03998 1.68398 1.08600 1.29886 1.09529 1.24206 1.03126 0.85545 0.97452 0.90356 0.90306 0.85430 0.77747 0.92633 0.91063 0.95134 0.93976 0.80436 0.93378 0.92498 0.89861 0.92301 0.89417 0.89316 0.76234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.84 113.37 1.12 1.11 16 2 O -0.30 -2.25 10.51 -90.58 -0.95 -3.20 16 3 C 0.07 0.79 6.74 22.85 0.15 0.94 16 4 C 0.11 1.82 11.28 84.96 0.96 2.78 16 5 N -0.46 -12.23 10.11 -188.81 -1.91 -14.14 16 6 C 0.22 5.90 7.57 137.56 1.04 6.94 16 7 C 0.59 19.83 7.87 86.92 0.68 20.51 16 8 O -0.56 -23.86 17.11 -3.72 -0.06 -23.92 16 9 N -0.60 -17.34 3.33 -814.25 -2.71 -20.05 16 10 C 0.11 3.65 6.34 86.93 0.55 4.20 16 11 C -0.09 -2.72 2.50 -9.33 -0.02 -2.74 16 12 H 0.08 2.48 8.05 -2.38 -0.02 2.46 16 13 C 0.17 6.13 5.72 86.38 0.49 6.62 16 14 N -0.76 -36.01 5.36 -343.46 -1.84 -37.85 16 15 C -0.23 -13.19 10.47 84.04 0.88 -12.31 16 16 H 0.06 3.93 8.06 -2.91 -0.02 3.91 16 17 C -0.06 -3.74 5.50 84.86 0.47 -3.28 16 18 N -0.98 -64.12 13.97 21.65 0.30 -63.82 16 19 Si 0.95 47.68 27.73 68.60 1.90 49.58 16 20 H -0.28 -14.38 7.11 99.48 0.71 -13.68 16 21 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 22 H -0.25 -11.68 6.52 99.48 0.65 -11.03 16 23 C -0.09 -1.83 3.01 -9.61 -0.03 -1.86 16 24 H 0.10 1.82 8.04 -2.38 -0.02 1.80 16 25 C -0.13 -2.12 9.14 71.98 0.66 -1.46 16 26 C 0.13 2.55 4.99 86.73 0.43 2.99 16 27 N -0.45 -8.38 6.83 -188.81 -1.29 -9.67 16 28 C 0.06 0.70 10.31 84.96 0.88 1.57 16 29 H 0.08 -0.25 7.71 -2.39 -0.02 -0.27 16 30 H 0.08 -0.26 7.71 -2.39 -0.02 -0.28 16 31 H 0.13 -0.51 8.14 -2.39 -0.02 -0.53 16 32 H 0.21 2.21 8.06 -2.91 -0.02 2.18 16 33 H 0.06 2.07 8.04 -2.39 -0.02 2.06 16 34 H 0.07 2.38 7.91 -2.38 -0.02 2.36 16 35 H 0.03 1.13 7.97 -2.39 -0.02 1.11 16 36 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 37 H 0.36 16.89 5.53 -92.70 -0.51 16.37 16 38 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 39 H 0.06 0.91 8.12 -2.39 -0.02 0.89 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.09 1.61 7.05 -2.39 -0.02 1.59 16 43 H 0.09 1.56 7.53 -2.39 -0.02 1.55 16 44 H 0.22 0.27 6.47 -2.91 -0.02 0.26 16 Total: -1.00 -83.87 364.06 2.15 -81.72 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.45 Total: 15.32 kcal Atomic # 6 Polarization: 17.77 SS G_CDS: 8.26 Total: 26.02 kcal Atomic # 7 Polarization: -138.08 SS G_CDS: -7.45 Total: -145.53 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -1.02 Total: -27.12 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.90 Total: 49.58 kcal Total: -83.87 2.15 -81.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106403602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.947 kcal (2) G-P(sol) polarization free energy of solvation -83.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds