Wall clock time and date at job start Fri Apr 10 2020 18:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35676 * 116.99635 * 2 1 4 4 C 1.39490 * 120.00934 * 179.72610 * 3 2 1 5 5 N 1.31945 * 120.11207 * 179.73089 * 4 3 2 6 6 C 1.32192 * 120.14373 * 0.52434 * 5 4 3 7 7 C 1.39239 * 120.02198 * 359.75466 * 6 5 4 8 8 C 1.48133 * 120.05858 * 180.02562 * 7 6 5 9 9 O 1.21520 * 119.99539 * 359.97276 * 8 7 6 10 10 N 1.34774 * 120.00174 * 179.97438 * 8 7 6 11 11 C 1.48117 * 127.03318 * 179.70820 * 10 8 7 12 12 C 1.54598 * 103.42167 * 219.28071 * 11 10 8 13 13 H 1.09005 * 110.57462 * 81.16633 * 12 11 10 14 14 C 1.52999 * 110.99045 * 204.37419 * 12 11 10 15 15 N 1.46503 * 109.46869 * 288.65385 * 14 12 11 16 16 C 1.36933 * 119.99714 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00641 * 359.97438 * 16 15 14 18 18 C 1.38817 * 119.99661 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00226 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99769 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47445 * 89.99519 * 20 18 16 22 22 H 1.48498 * 109.47188 * 209.99640 * 20 18 16 23 23 H 1.48498 * 109.47137 * 329.99686 * 20 18 16 24 24 C 1.54615 * 102.91435 * 322.86817 * 12 11 10 25 25 H 1.08996 * 110.33078 * 262.80322 * 24 12 11 26 26 C 1.53000 * 110.41526 * 140.63409 * 24 12 11 27 27 C 1.47484 * 127.03169 * 0.02562 * 10 8 7 28 28 N 1.32155 * 120.01002 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.47382 * 59.99725 * 1 2 3 30 30 H 1.09001 * 109.46938 * 299.99712 * 1 2 3 31 31 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.94164 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.98584 * 179.73279 * 6 5 4 34 34 H 1.08999 * 110.66227 * 337.76763 * 11 10 8 35 35 H 1.09001 * 110.66040 * 100.88490 * 11 10 8 36 36 H 1.08995 * 109.46987 * 48.64972 * 14 12 11 37 37 H 1.09002 * 109.47229 * 168.65672 * 14 12 11 38 38 H 0.96999 * 119.99841 * 359.97438 * 15 14 12 39 39 H 0.97002 * 119.99874 * 180.02562 * 19 18 16 40 40 H 1.09010 * 109.46867 * 302.87059 * 26 24 12 41 41 H 1.08993 * 109.47139 * 62.87210 * 26 24 12 42 42 H 1.09000 * 109.47308 * 182.88012 * 26 24 12 43 43 H 1.09000 * 109.91782 * 273.87852 * 27 10 8 44 44 H 1.09002 * 109.91365 * 34.97146 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4379 1.2823 0.0058 5 7 4.0389 2.4568 0.0004 6 6 3.3237 3.5685 0.0000 7 6 1.9329 3.5021 0.0001 8 6 1.1306 4.7474 -0.0009 9 8 1.6863 5.8281 -0.0013 10 7 -0.2155 4.6818 -0.0013 11 6 -1.1641 5.8193 0.0037 12 6 -2.2880 5.3452 0.9535 13 1 -2.0002 5.4979 1.9937 14 6 -3.6040 6.0627 0.6466 15 7 -3.5081 7.4615 1.0715 16 6 -4.5728 8.3046 0.8967 17 1 -5.4831 7.9387 0.4451 18 6 -4.4818 9.6301 1.2989 19 7 -3.3724 10.0764 1.8487 20 14 -5.9340 10.7805 1.0597 21 1 -6.8051 10.7348 2.2615 22 1 -5.4399 12.1664 0.8590 23 1 -6.7117 10.3549 -0.1317 24 6 -2.3988 3.8369 0.6319 25 1 -3.2092 3.6590 -0.0750 26 6 -2.6269 3.0333 1.9137 27 6 -1.0454 3.4626 -0.0004 28 7 1.3253 2.3174 0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0254 0.3760 0.0107 33 1 3.8184 4.5286 0.0000 34 1 -0.6854 6.7176 0.3937 35 1 -1.5582 5.9959 -0.9971 36 1 -3.7991 6.0212 -0.4250 37 1 -4.4176 5.5749 1.1833 38 1 -2.6907 7.7901 1.4774 39 1 -3.3090 11.0025 2.1301 40 1 -1.8160 3.2301 2.6151 41 1 -3.5754 3.3274 2.3630 42 1 -2.6516 1.9698 1.6762 43 1 -1.1966 3.1156 -1.0226 44 1 -0.5603 2.6837 0.5880 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106733229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:02 Heat of formation + Delta-G solvation = -21.257002 kcal Electronic energy + Delta-G solvation = -27184.178772 eV Core-core repulsion = 23330.059547 eV Total energy + Delta-G solvation = -3854.119226 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.66497 -41.07676 -39.63166 -38.97642 -36.51787 -35.51069 -34.09297 -33.07280 -32.36206 -30.70768 -28.74675 -27.74458 -27.23033 -26.09952 -25.03966 -24.59467 -22.67146 -21.46476 -21.17492 -19.52553 -19.30337 -18.77767 -17.96153 -17.70171 -17.49082 -17.21102 -16.75303 -16.50699 -15.82607 -15.54731 -15.47359 -15.22470 -14.99470 -14.83269 -14.42161 -14.18336 -14.08511 -13.68994 -13.58056 -13.36318 -12.97100 -12.82576 -12.75321 -12.72723 -12.56796 -12.44052 -12.13595 -12.07327 -11.96432 -11.77863 -11.73298 -11.51865 -11.39641 -10.93736 -10.38943 -10.05152 -9.72630 -8.99846 -7.94173 -5.23612 -0.82369 -0.13661 1.47316 1.47600 1.49345 1.57753 1.60361 1.78969 2.52939 2.55954 2.62544 3.02983 3.26147 3.38554 3.42819 3.56814 3.70296 3.79723 3.96291 4.18354 4.24378 4.30749 4.37029 4.45425 4.46014 4.50802 4.54784 4.70471 4.76181 4.80040 4.84573 4.86785 4.91786 5.04334 5.08818 5.18383 5.24616 5.32151 5.49400 5.53209 5.78237 5.90281 6.27180 6.29631 6.45399 6.80295 7.33384 8.09436 8.31197 9.29467 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022200 B = 0.002893 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.958865 B = 9674.885889 C =10706.160791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.294 6.294 3 C 0.272 3.728 4 C 0.084 3.916 5 N -0.415 5.415 6 C 0.064 3.936 7 C 0.067 3.933 8 C 0.580 3.420 9 O -0.566 6.566 10 N -0.598 5.598 11 C 0.116 3.884 12 C -0.092 4.092 13 H 0.066 0.934 14 C 0.166 3.834 15 N -0.748 5.748 16 C -0.243 4.243 17 H 0.080 0.920 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 0.974 3.026 21 H -0.286 1.286 22 H -0.299 1.299 23 H -0.267 1.267 24 C -0.094 4.094 25 H 0.105 0.895 26 C -0.136 4.136 27 C 0.108 3.892 28 N -0.470 5.470 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.130 0.870 32 H 0.219 0.781 33 H 0.184 0.816 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.029 0.971 37 H 0.033 0.967 38 H 0.371 0.629 39 H 0.250 0.750 40 H 0.043 0.957 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.056 -27.642 -4.614 29.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.198 6.198 3 C 0.086 3.914 4 C -0.083 4.083 5 N -0.129 5.129 6 C -0.092 4.092 7 C -0.071 4.071 8 C 0.367 3.633 9 O -0.445 6.445 10 N -0.328 5.328 11 C -0.006 4.006 12 C -0.112 4.112 13 H 0.085 0.915 14 C 0.040 3.960 15 N -0.391 5.391 16 C -0.374 4.374 17 H 0.098 0.902 18 C -0.271 4.271 19 N -0.622 5.622 20 Si 0.803 3.197 21 H -0.213 1.213 22 H -0.225 1.225 23 H -0.191 1.191 24 C -0.113 4.113 25 H 0.123 0.877 26 C -0.193 4.193 27 C -0.014 4.014 28 N -0.204 5.204 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.148 0.852 32 H 0.235 0.765 33 H 0.201 0.799 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.203 0.797 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.330 -27.267 -4.700 29.199 hybrid contribution -0.659 1.702 0.204 1.836 sum 8.671 -25.565 -4.496 27.367 Atomic orbital electron populations 1.23364 0.75175 1.05719 1.02858 1.86325 1.24781 1.21801 1.86940 1.21278 0.91585 0.85580 0.92932 1.23893 0.89901 0.98343 0.96145 1.68730 1.37937 0.97932 1.08258 1.23632 0.90243 0.99228 0.96145 1.21464 0.93216 0.90810 1.01614 1.17652 0.81000 0.87471 0.77183 1.90824 1.71127 1.29891 1.52673 1.48718 1.04033 1.10550 1.69549 1.22406 0.88913 0.89088 1.00208 1.22330 0.94121 0.96065 0.98669 0.91542 1.20782 0.94476 0.83674 0.97088 1.42637 1.15550 1.06927 1.73956 1.19655 0.94278 0.91401 1.32116 0.90205 1.25609 1.00025 0.99121 1.02312 1.69837 1.28033 1.15570 1.48808 0.85127 0.78686 0.77841 0.78032 1.21347 1.22539 1.19150 1.22175 0.97492 0.92271 0.99368 0.87686 1.21800 1.01573 1.00541 0.95400 1.22738 0.89595 0.86658 1.02378 1.68123 1.39385 0.97939 1.14908 0.91769 0.91805 0.85164 0.76459 0.79885 0.92747 0.90344 0.95267 0.94929 0.79726 0.94124 0.93797 0.92371 0.89626 0.90196 0.87140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.15 113.37 1.15 1.33 16 2 O -0.29 -3.59 10.49 -89.94 -0.94 -4.53 16 3 C 0.27 4.30 7.50 84.95 0.64 4.93 16 4 C 0.08 1.18 11.18 84.98 0.95 2.13 16 5 N -0.41 -7.94 10.48 -193.73 -2.03 -9.97 16 6 C 0.06 1.44 10.76 84.88 0.91 2.35 16 7 C 0.07 1.64 6.72 41.81 0.28 1.92 16 8 C 0.58 18.18 7.88 86.87 0.68 18.87 16 9 O -0.57 -21.96 16.55 -3.78 -0.06 -22.02 16 10 N -0.60 -17.36 3.29 -813.15 -2.68 -20.04 16 11 C 0.12 3.92 6.44 86.61 0.56 4.48 16 12 C -0.09 -2.87 2.60 -9.70 -0.03 -2.89 16 13 H 0.07 2.31 7.86 -2.38 -0.02 2.29 16 14 C 0.17 6.28 5.58 86.38 0.48 6.76 16 15 N -0.75 -38.03 5.52 -343.45 -1.90 -39.92 16 16 C -0.24 -13.55 9.99 84.04 0.84 -12.71 16 17 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 18 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 19 N -0.97 -60.99 13.06 21.65 0.28 -60.71 16 20 Si 0.97 46.57 29.55 68.60 2.03 48.60 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 24 C -0.09 -1.97 3.17 -9.90 -0.03 -2.00 16 25 H 0.10 1.90 7.85 -2.39 -0.02 1.88 16 26 C -0.14 -2.39 8.90 71.98 0.64 -1.75 16 27 C 0.11 2.23 5.74 86.53 0.50 2.72 16 28 N -0.47 -9.25 5.79 -297.47 -1.72 -10.97 16 29 H 0.06 0.52 8.11 -2.39 -0.02 0.51 16 30 H 0.06 0.52 7.43 -2.39 -0.02 0.51 16 31 H 0.13 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.22 1.35 8.06 -2.91 -0.02 1.32 16 33 H 0.18 4.09 7.64 -2.91 -0.02 4.06 16 34 H 0.05 2.23 7.85 -2.39 -0.02 2.22 16 35 H 0.08 2.62 7.95 -2.39 -0.02 2.60 16 36 H 0.03 1.08 8.00 -2.39 -0.02 1.06 16 37 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.37 20.59 7.67 -92.71 -0.71 19.88 16 39 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.11 2.03 4.47 -2.39 -0.01 2.02 16 Total: -1.00 -73.80 366.06 1.33 -72.47 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.31 Total: 25.06 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: 8.05 Total: 22.03 kcal Atomic # 7 Polarization: -133.57 SS G_CDS: -8.05 Total: -141.61 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -1.01 Total: -26.55 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -73.80 1.33 -72.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106733229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.214 kcal (2) G-P(sol) polarization free energy of solvation -73.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds