Wall clock time and date at job start Fri Apr 10 2020 18:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 110.28692 * 2 1 4 4 C 1.54005 * 110.32407 * 237.86452 * 2 1 3 5 5 N 1.47485 * 107.08286 * 242.31005 * 4 2 1 6 6 C 1.34775 * 127.03011 * 154.51987 * 5 4 2 7 7 O 1.21681 * 119.99567 * 185.66559 * 6 5 4 8 8 C 1.46809 * 120.00142 * 5.38987 * 6 5 4 9 9 C 1.36358 * 125.84716 * 187.00298 * 8 6 5 10 10 C 1.41297 * 107.00887 * 180.02562 * 9 8 6 11 11 C 1.47391 * 126.46288 * 179.97438 * 10 9 8 12 12 N 1.34773 * 120.00274 * 179.97438 * 11 10 9 13 13 O 1.21612 * 119.99661 * 0.02562 * 11 10 9 14 14 C 1.38216 * 107.07714 * 0.02562 * 10 9 8 15 15 N 1.34261 * 108.39363 * 359.73040 * 14 10 9 16 16 H 0.97001 * 125.39378 * 180.29191 * 15 14 10 17 17 C 1.48117 * 105.93076 * 334.77895 * 5 4 2 18 18 C 1.54601 * 103.42479 * 39.02694 * 17 5 4 19 19 H 1.08997 * 110.57718 * 81.16334 * 18 17 5 20 20 C 1.52994 * 110.98585 * 204.37219 * 18 17 5 21 21 N 1.46495 * 109.47193 * 288.64613 * 20 18 17 22 22 C 1.36936 * 120.00120 * 180.02562 * 21 20 18 23 23 H 1.08005 * 120.00023 * 359.97438 * 22 21 20 24 24 C 1.38817 * 120.00141 * 180.02562 * 22 21 20 25 25 N 1.31617 * 119.99622 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00059 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47305 * 59.99897 * 26 24 22 28 28 H 1.48494 * 109.47124 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47172 * 299.99787 * 26 24 22 30 30 H 1.08994 * 109.46794 * 180.68515 * 1 2 3 31 31 H 1.08999 * 109.46580 * 300.68314 * 1 2 3 32 32 H 1.08995 * 109.47152 * 60.68235 * 1 2 3 33 33 H 1.09001 * 109.91147 * 122.94938 * 4 2 1 34 34 H 1.09000 * 109.91441 * 1.67637 * 4 2 1 35 35 H 1.08001 * 126.49156 * 0.02562 * 9 8 6 36 36 H 0.97004 * 120.00208 * 0.02562 * 12 11 10 37 37 H 0.97006 * 120.00354 * 179.97438 * 12 11 10 38 38 H 1.07996 * 125.80026 * 180.02562 * 14 10 9 39 39 H 1.09004 * 110.66081 * 157.50989 * 17 5 4 40 40 H 1.08998 * 110.66153 * 280.62277 * 17 5 4 41 41 H 1.08997 * 109.47524 * 48.65102 * 20 18 17 42 42 H 1.09004 * 109.46683 * 168.64963 * 20 18 17 43 43 H 0.97002 * 119.99830 * 0.02562 * 21 20 18 44 44 H 0.97007 * 119.99743 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7682 -1.2229 5 7 2.8298 -1.9203 -0.7103 6 6 3.0645 -3.0859 -1.3449 7 8 3.6267 -3.9937 -0.7615 8 6 2.6364 -3.2624 -2.7380 9 6 2.6900 -4.4249 -3.4487 10 6 2.1823 -4.1453 -4.7374 11 6 2.0471 -5.1003 -5.8518 12 7 1.5426 -4.6911 -7.0326 13 8 2.3899 -6.2579 -5.7055 14 6 1.8376 -2.8069 -4.7562 15 7 2.1076 -2.2829 -3.5500 16 1 1.9562 -1.3602 -3.2916 17 6 3.2817 -1.5368 0.6471 18 6 2.0693 -0.7720 1.2263 19 1 1.3210 -1.4691 1.6031 20 6 2.5073 0.1966 2.3266 21 7 2.9002 -0.5617 3.5168 22 6 3.3310 0.0972 4.6373 23 1 3.3815 1.1761 4.6434 24 6 3.7038 -0.6214 5.7649 25 7 3.6428 -1.9361 5.7573 26 14 4.2921 0.2775 7.2930 27 1 3.2180 1.1793 7.7813 28 1 4.6270 -0.7101 8.3501 29 1 5.4985 1.0781 6.9628 30 1 -0.3633 -1.0276 0.0123 31 1 -0.3632 0.5244 0.8838 32 1 -0.3633 0.5032 -0.8960 33 1 2.7166 -0.1221 -1.8112 34 1 1.2333 -1.1173 -1.8350 35 1 3.0518 -5.3786 -3.0938 36 1 1.2688 -3.7678 -7.1493 37 1 1.4539 -5.3196 -7.7662 38 1 1.4176 -2.2745 -5.5967 39 1 3.4982 -2.4222 1.2449 40 1 4.1541 -0.8857 0.5924 41 1 3.3541 0.7865 1.9757 42 1 1.6801 0.8612 2.5760 43 1 2.8553 -1.5307 3.5112 44 1 3.9037 -2.4383 6.5451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106802764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:07 Heat of formation + Delta-G solvation = -10.908788 kcal Electronic energy + Delta-G solvation = -26443.721005 eV Core-core repulsion = 22590.050512 eV Total energy + Delta-G solvation = -3853.670494 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.97754 -39.93235 -38.99139 -37.87158 -34.77298 -33.96938 -33.02674 -31.75174 -31.39949 -30.11637 -28.91264 -26.74552 -25.71153 -23.71884 -23.55922 -22.16957 -21.10544 -20.55947 -20.11854 -19.84650 -18.39499 -17.21631 -16.96865 -16.72946 -16.17374 -16.11468 -15.52810 -15.13451 -14.70554 -14.41257 -14.30418 -14.07829 -13.95560 -13.58904 -13.55532 -13.36547 -13.05425 -12.99636 -12.70201 -12.46390 -12.15691 -12.04216 -11.43522 -11.19412 -10.88672 -10.68763 -10.57363 -10.47391 -10.36693 -10.14825 -10.04281 -9.98479 -9.69623 -9.46400 -8.91980 -8.87260 -8.62438 -6.95430 -5.76868 -3.07014 1.12510 1.55204 2.55214 2.79118 3.08603 3.33630 3.36093 3.43452 3.47649 3.49492 4.23895 4.29167 4.37071 4.52038 4.59268 4.63823 4.70803 4.89943 5.03191 5.07587 5.36066 5.36876 5.46818 5.53559 5.61290 5.65179 5.66688 5.82452 5.89617 6.01997 6.05989 6.08457 6.14930 6.32297 6.33597 6.42922 6.49593 6.63877 6.75823 6.79962 7.07779 7.41064 7.67384 8.03799 8.06336 8.40926 9.52101 10.08518 10.42598 11.45482 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026145 B = 0.002411 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.689979 B =11611.217072 C =12426.766964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.091 0.909 4 C 0.092 3.908 5 N -0.623 5.623 6 C 0.603 3.397 7 O -0.517 6.517 8 C -0.048 4.048 9 C -0.046 4.046 10 C -0.237 4.237 11 C 0.594 3.406 12 N -0.856 5.856 13 O -0.543 6.543 14 C 0.065 3.935 15 N -0.526 5.526 16 H 0.422 0.578 17 C 0.116 3.884 18 C -0.102 4.102 19 H 0.086 0.914 20 C 0.166 3.834 21 N -0.733 5.733 22 C -0.244 4.244 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.930 5.930 26 Si 0.908 3.092 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.160 0.840 36 H 0.397 0.603 37 H 0.403 0.597 38 H 0.180 0.820 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.021 0.979 42 H 0.023 0.977 43 H 0.385 0.615 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.394 4.758 -27.476 29.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.109 0.891 4 C -0.031 4.031 5 N -0.357 5.357 6 C 0.391 3.609 7 O -0.392 6.392 8 C -0.159 4.159 9 C -0.072 4.072 10 C -0.248 4.248 11 C 0.381 3.619 12 N -0.420 5.420 13 O -0.420 6.420 14 C -0.077 4.077 15 N -0.125 5.125 16 H 0.265 0.735 17 C -0.006 4.006 18 C -0.122 4.122 19 H 0.104 0.896 20 C 0.038 3.962 21 N -0.377 5.377 22 C -0.375 4.375 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.578 5.578 26 Si 0.739 3.261 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.178 0.822 36 H 0.225 0.775 37 H 0.234 0.766 38 H 0.197 0.803 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.039 0.961 42 H 0.041 0.959 43 H 0.219 0.781 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.727 3.723 -26.672 28.017 hybrid contribution -0.032 0.985 0.491 1.101 sum -7.759 4.708 -26.181 27.709 Atomic orbital electron populations 1.21856 0.93934 1.02148 1.02117 1.22072 0.96470 0.99752 0.93407 0.89067 1.22412 0.94854 0.88055 0.97823 1.48764 1.53751 1.14318 1.18846 1.16632 0.79319 0.81191 0.83722 1.90909 1.42718 1.39560 1.66012 1.20167 1.12730 0.89951 0.93015 1.21111 0.97527 0.97457 0.91077 1.19580 1.15288 0.93401 0.96505 1.17401 0.75927 0.86814 0.81777 1.43675 1.68212 1.15377 1.14718 1.90843 1.49761 1.18809 1.82624 1.22406 1.02149 0.94013 0.89127 1.42422 1.47164 1.12266 1.10647 0.73453 1.22569 0.96868 1.00444 0.80678 1.22530 0.97147 0.97898 0.94591 0.89607 1.20609 0.96589 0.92658 0.86370 1.42359 1.79312 1.05951 1.10085 1.19139 1.36433 0.91178 0.90800 0.91244 1.24766 1.02235 0.95495 0.98341 1.69652 1.53993 1.04536 1.29645 0.86265 0.78573 0.78353 0.82941 1.21294 1.21666 1.21255 0.92519 0.91469 0.92801 0.91369 0.91343 0.82249 0.77478 0.76610 0.80290 0.88806 0.90408 0.96108 0.95883 0.78148 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.90 37.16 0.33 -0.93 16 2 C -0.10 -0.97 3.17 -89.24 -0.28 -1.26 16 3 H 0.09 0.83 7.85 -51.93 -0.41 0.42 16 4 C 0.09 0.80 5.01 -2.98 -0.01 0.79 16 5 N -0.62 -8.17 3.29 -171.46 -0.56 -8.73 16 6 C 0.60 9.08 7.85 -12.80 -0.10 8.98 16 7 O -0.52 -10.08 17.06 5.21 0.09 -9.99 16 8 C -0.05 -0.56 6.79 -82.40 -0.56 -1.12 16 9 C -0.05 -0.58 10.38 -39.10 -0.41 -0.99 16 10 C -0.24 -2.30 6.13 -105.02 -0.64 -2.94 16 11 C 0.59 6.08 8.09 -12.54 -0.10 5.98 16 12 N -0.86 -4.25 8.86 30.42 0.27 -3.98 16 13 O -0.54 -8.20 17.76 5.27 0.09 -8.11 16 14 C 0.07 0.37 11.43 -16.50 -0.19 0.18 16 15 N -0.53 -3.74 5.32 -9.30 -0.05 -3.79 16 16 H 0.42 1.95 5.38 -40.82 -0.22 1.73 16 17 C 0.12 1.80 6.47 -2.31 -0.01 1.78 16 18 C -0.10 -1.49 2.60 -88.93 -0.23 -1.73 16 19 H 0.09 1.39 7.86 -51.93 -0.41 0.98 16 20 C 0.17 3.05 5.58 -4.05 -0.02 3.03 16 21 N -0.73 -18.01 5.52 -59.91 -0.33 -18.34 16 22 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 23 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 26 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 30 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.44 7.93 -51.93 -0.41 0.03 16 34 H 0.07 0.46 5.67 -51.93 -0.29 0.16 16 35 H 0.16 2.23 8.06 -52.49 -0.42 1.81 16 36 H 0.40 0.54 7.74 -40.82 -0.32 0.23 16 37 H 0.40 1.62 8.93 -40.82 -0.36 1.25 16 38 H 0.18 0.11 7.44 -52.49 -0.39 -0.29 16 39 H 0.09 1.76 7.81 -51.93 -0.41 1.36 16 40 H 0.08 1.20 7.95 -51.93 -0.41 0.79 16 41 H 0.02 0.38 8.00 -51.93 -0.42 -0.03 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.38 10.12 7.67 -40.82 -0.31 9.81 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -38.07 366.61 -7.77 -45.84 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.02 Total: 7.36 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -2.48 Total: 4.46 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: 0.05 Total: -62.41 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: 0.18 Total: -18.09 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -38.07 -7.77 -45.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106802764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.930 kcal (2) G-P(sol) polarization free energy of solvation -38.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds