Wall clock time and date at job start Fri Apr 10 2020 18:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 110.28692 * 2 1 4 4 C 1.54005 * 110.32407 * 237.86452 * 2 1 3 5 5 N 1.47485 * 107.08286 * 242.31005 * 4 2 1 6 6 C 1.34775 * 127.03011 * 154.51987 * 5 4 2 7 7 O 1.21681 * 119.99567 * 185.66559 * 6 5 4 8 8 C 1.46809 * 120.00142 * 5.38987 * 6 5 4 9 9 C 1.36358 * 125.84716 * 187.00298 * 8 6 5 10 10 C 1.41297 * 107.00887 * 180.02562 * 9 8 6 11 11 C 1.47391 * 126.46288 * 179.97438 * 10 9 8 12 12 N 1.34773 * 120.00274 * 179.97438 * 11 10 9 13 13 O 1.21612 * 119.99661 * 0.02562 * 11 10 9 14 14 C 1.38216 * 107.07714 * 0.02562 * 10 9 8 15 15 N 1.34261 * 108.39363 * 359.73040 * 14 10 9 16 16 H 0.97001 * 125.39378 * 180.29191 * 15 14 10 17 17 C 1.48117 * 105.93076 * 334.77895 * 5 4 2 18 18 C 1.54601 * 103.42479 * 39.02694 * 17 5 4 19 19 H 1.08997 * 110.57718 * 81.16334 * 18 17 5 20 20 C 1.52994 * 110.98585 * 204.37219 * 18 17 5 21 21 N 1.46495 * 109.47193 * 288.64613 * 20 18 17 22 22 C 1.36936 * 120.00120 * 180.02562 * 21 20 18 23 23 H 1.08005 * 120.00023 * 359.97438 * 22 21 20 24 24 C 1.38817 * 120.00141 * 180.02562 * 22 21 20 25 25 N 1.31617 * 119.99622 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00059 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47305 * 59.99897 * 26 24 22 28 28 H 1.48494 * 109.47124 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47172 * 299.99787 * 26 24 22 30 30 H 1.08994 * 109.46794 * 180.68515 * 1 2 3 31 31 H 1.08999 * 109.46580 * 300.68314 * 1 2 3 32 32 H 1.08995 * 109.47152 * 60.68235 * 1 2 3 33 33 H 1.09001 * 109.91147 * 122.94938 * 4 2 1 34 34 H 1.09000 * 109.91441 * 1.67637 * 4 2 1 35 35 H 1.08001 * 126.49156 * 0.02562 * 9 8 6 36 36 H 0.97004 * 120.00208 * 0.02562 * 12 11 10 37 37 H 0.97006 * 120.00354 * 179.97438 * 12 11 10 38 38 H 1.07996 * 125.80026 * 180.02562 * 14 10 9 39 39 H 1.09004 * 110.66081 * 157.50989 * 17 5 4 40 40 H 1.08998 * 110.66153 * 280.62277 * 17 5 4 41 41 H 1.08997 * 109.47524 * 48.65102 * 20 18 17 42 42 H 1.09004 * 109.46683 * 168.64963 * 20 18 17 43 43 H 0.97002 * 119.99830 * 0.02562 * 21 20 18 44 44 H 0.97007 * 119.99743 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7682 -1.2229 5 7 2.8298 -1.9203 -0.7103 6 6 3.0645 -3.0859 -1.3449 7 8 3.6267 -3.9937 -0.7615 8 6 2.6364 -3.2624 -2.7380 9 6 2.6900 -4.4249 -3.4487 10 6 2.1823 -4.1453 -4.7374 11 6 2.0471 -5.1003 -5.8518 12 7 1.5426 -4.6911 -7.0326 13 8 2.3899 -6.2579 -5.7055 14 6 1.8376 -2.8069 -4.7562 15 7 2.1076 -2.2829 -3.5500 16 1 1.9562 -1.3602 -3.2916 17 6 3.2817 -1.5368 0.6471 18 6 2.0693 -0.7720 1.2263 19 1 1.3210 -1.4691 1.6031 20 6 2.5073 0.1966 2.3266 21 7 2.9002 -0.5617 3.5168 22 6 3.3310 0.0972 4.6373 23 1 3.3815 1.1761 4.6434 24 6 3.7038 -0.6214 5.7649 25 7 3.6428 -1.9361 5.7573 26 14 4.2921 0.2775 7.2930 27 1 3.2180 1.1793 7.7813 28 1 4.6270 -0.7101 8.3501 29 1 5.4985 1.0781 6.9628 30 1 -0.3633 -1.0276 0.0123 31 1 -0.3632 0.5244 0.8838 32 1 -0.3633 0.5032 -0.8960 33 1 2.7166 -0.1221 -1.8112 34 1 1.2333 -1.1173 -1.8350 35 1 3.0518 -5.3786 -3.0938 36 1 1.2688 -3.7678 -7.1493 37 1 1.4539 -5.3196 -7.7662 38 1 1.4176 -2.2745 -5.5967 39 1 3.4982 -2.4222 1.2449 40 1 4.1541 -0.8857 0.5924 41 1 3.3541 0.7865 1.9757 42 1 1.6801 0.8612 2.5760 43 1 2.8553 -1.5307 3.5112 44 1 3.9037 -2.4383 6.5451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106802764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:06 Heat of formation + Delta-G solvation = -43.136439 kcal Electronic energy + Delta-G solvation = -26445.118501 eV Core-core repulsion = 22590.050512 eV Total energy + Delta-G solvation = -3855.067989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.76064 -40.95758 -39.80388 -39.06520 -36.50857 -34.67289 -34.29962 -33.09442 -32.42102 -31.23305 -30.14539 -27.55721 -27.21985 -25.23492 -24.39065 -23.42416 -22.17356 -21.39828 -21.20080 -20.59880 -19.45008 -18.87546 -17.80421 -17.55100 -17.19717 -17.09893 -16.62256 -16.40986 -15.94459 -15.58042 -15.41606 -15.20608 -14.92692 -14.82588 -14.74616 -14.48773 -14.29100 -14.07568 -13.67971 -13.48033 -13.33091 -13.17565 -12.93429 -12.72649 -12.48729 -12.20773 -11.96553 -11.82377 -11.60962 -11.49765 -11.34192 -11.18786 -10.93034 -10.62458 -10.24888 -9.93083 -9.41144 -9.00895 -7.94973 -5.24721 0.32936 0.75690 1.46251 1.49863 1.56122 1.65250 1.98546 2.10355 2.55653 2.55889 2.75378 3.31222 3.39157 3.43910 3.66637 3.76547 3.87877 4.03500 4.10756 4.16763 4.25765 4.28765 4.42059 4.49186 4.55891 4.72965 4.74562 4.78758 4.84612 4.87073 4.97045 5.03783 5.17249 5.23930 5.33102 5.33848 5.47725 5.50798 5.54748 5.99622 6.26069 6.28487 6.37502 6.62984 6.91323 7.31948 7.48058 8.08884 8.29599 9.28515 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026145 B = 0.002411 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.689979 B =11611.217072 C =12426.766964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 H 0.114 0.886 4 C 0.088 3.912 5 N -0.619 5.619 6 C 0.595 3.405 7 O -0.584 6.584 8 C -0.065 4.065 9 C -0.071 4.071 10 C -0.267 4.267 11 C 0.590 3.410 12 N -0.826 5.826 13 O -0.608 6.608 14 C 0.128 3.872 15 N -0.506 5.506 16 H 0.440 0.560 17 C 0.117 3.883 18 C -0.094 4.094 19 H 0.062 0.938 20 C 0.165 3.835 21 N -0.750 5.750 22 C -0.243 4.243 23 H 0.082 0.918 24 C -0.081 4.081 25 N -0.973 5.973 26 Si 0.976 3.024 27 H -0.274 1.274 28 H -0.300 1.300 29 H -0.276 1.276 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.123 0.877 36 H 0.420 0.580 37 H 0.411 0.589 38 H 0.250 0.750 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.032 0.968 42 H 0.033 0.967 43 H 0.370 0.630 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.354 9.294 -31.218 34.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 H 0.132 0.868 4 C -0.034 4.034 5 N -0.351 5.351 6 C 0.386 3.614 7 O -0.464 6.464 8 C -0.176 4.176 9 C -0.097 4.097 10 C -0.276 4.276 11 C 0.378 3.622 12 N -0.390 5.390 13 O -0.491 6.491 14 C -0.016 4.016 15 N -0.107 5.107 16 H 0.286 0.714 17 C -0.005 4.005 18 C -0.114 4.114 19 H 0.081 0.919 20 C 0.039 3.961 21 N -0.392 5.392 22 C -0.375 4.375 23 H 0.100 0.900 24 C -0.273 4.273 25 N -0.624 5.624 26 Si 0.805 3.195 27 H -0.200 1.200 28 H -0.227 1.227 29 H -0.202 1.202 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.141 0.859 36 H 0.252 0.748 37 H 0.243 0.757 38 H 0.266 0.734 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.201 0.799 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.751 8.419 -30.489 33.099 hybrid contribution 0.517 -0.355 1.518 1.643 sum -9.234 8.065 -28.971 31.458 Atomic orbital electron populations 1.21861 0.92630 1.01793 1.03549 1.22085 0.97467 1.00135 0.90877 0.86812 1.22799 0.96092 0.86670 0.97814 1.48754 1.53560 1.15103 1.17704 1.17158 0.78534 0.80751 0.84955 1.90864 1.45866 1.41866 1.67797 1.19412 1.15244 0.91147 0.91769 1.21046 0.98570 0.96756 0.93369 1.19576 1.17317 0.95556 0.95198 1.17575 0.75609 0.85975 0.83069 1.43385 1.65881 1.16768 1.12991 1.90816 1.52934 1.21460 1.83851 1.23328 0.96954 0.92034 0.89318 1.42301 1.45949 1.12156 1.10265 0.71377 1.22333 0.97692 0.98528 0.81983 1.22343 0.96140 0.97279 0.95640 0.91914 1.20809 0.96953 0.93070 0.85311 1.42655 1.79365 1.05663 1.11516 1.19633 1.34468 0.91851 0.91500 0.90031 1.25652 1.03673 0.96234 1.01781 1.69843 1.56208 1.06259 1.30110 0.85174 0.78462 0.77021 0.78881 1.20038 1.22650 1.20201 0.93744 0.92616 0.88879 0.87343 0.88415 0.85933 0.74817 0.75728 0.73392 0.93713 0.90160 0.95016 0.94874 0.79889 0.94165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.90 71.98 0.64 -1.31 16 2 C -0.09 -1.43 3.17 -9.90 -0.03 -1.46 16 3 H 0.11 1.47 7.85 -2.39 -0.02 1.45 16 4 C 0.09 1.16 5.01 86.53 0.43 1.60 16 5 N -0.62 -16.10 3.29 -814.61 -2.68 -18.78 16 6 C 0.59 18.83 7.85 86.49 0.68 19.51 16 7 O -0.58 -25.35 17.06 -4.29 -0.07 -25.42 16 8 C -0.06 -1.50 6.79 40.01 0.27 -1.23 16 9 C -0.07 -1.87 10.38 22.58 0.23 -1.64 16 10 C -0.27 -4.66 6.13 -20.12 -0.12 -4.78 16 11 C 0.59 11.36 8.09 86.65 0.70 12.07 16 12 N -0.83 -5.32 8.86 -175.91 -1.56 -6.88 16 13 O -0.61 -19.20 17.76 -4.07 -0.07 -19.27 16 14 C 0.13 0.71 11.43 84.32 0.96 1.68 16 15 N -0.51 -4.83 5.32 -183.34 -0.98 -5.81 16 16 H 0.44 1.21 5.38 -92.71 -0.50 0.71 16 17 C 0.12 3.83 6.47 86.61 0.56 4.39 16 18 C -0.09 -2.76 2.60 -9.70 -0.03 -2.78 16 19 H 0.06 2.13 7.86 -2.39 -0.02 2.11 16 20 C 0.16 6.01 5.58 86.38 0.48 6.49 16 21 N -0.75 -37.92 5.52 -343.46 -1.90 -39.82 16 22 C -0.24 -13.50 9.99 84.03 0.84 -12.66 16 23 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 24 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 25 N -0.97 -61.74 13.06 21.65 0.28 -61.45 16 26 Si 0.98 46.65 29.55 68.60 2.03 48.68 16 27 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 28 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 29 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 30 H 0.04 0.74 8.13 -2.39 -0.02 0.72 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 0.61 8.14 -2.39 -0.02 0.60 16 33 H 0.11 0.70 7.93 -2.39 -0.02 0.68 16 34 H 0.10 0.76 5.67 -2.39 -0.01 0.74 16 35 H 0.12 4.04 8.06 -2.91 -0.02 4.01 16 36 H 0.42 -1.27 7.74 -92.71 -0.72 -1.98 16 37 H 0.41 2.11 8.93 -92.70 -0.83 1.29 16 38 H 0.25 -2.10 7.44 -2.91 -0.02 -2.13 16 39 H 0.04 1.88 7.81 -2.39 -0.02 1.86 16 40 H 0.08 2.54 7.95 -2.39 -0.02 2.52 16 41 H 0.03 1.11 8.00 -2.39 -0.02 1.09 16 42 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.37 20.67 7.67 -92.71 -0.71 19.96 16 44 H 0.25 15.45 8.31 -92.70 -0.77 14.68 16 Total: -1.00 -95.65 366.61 -0.54 -96.19 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -1.68 Total: 17.00 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 6.09 Total: 15.58 kcal Atomic # 7 Polarization: -125.91 SS G_CDS: -6.83 Total: -132.74 kcal Atomic # 8 Polarization: -44.55 SS G_CDS: -0.15 Total: -44.70 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -95.65 -0.54 -96.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106802764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.049 kcal (2) G-P(sol) polarization free energy of solvation -95.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds