Wall clock time and date at job start Fri Apr 10 2020 18:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35297 * 116.99927 * 2 1 4 4 N 1.32471 * 119.02057 * 359.72164 * 3 2 1 5 5 C 1.32008 * 120.91909 * 180.27865 * 4 3 2 6 6 C 1.40066 * 118.98585 * 0.02562 * 5 4 3 7 7 C 1.47626 * 120.88069 * 179.97438 * 6 5 4 8 8 O 1.21577 * 119.99865 * 189.99877 * 7 6 5 9 9 N 1.34778 * 120.00268 * 10.00499 * 7 6 5 10 10 C 1.47490 * 127.03254 * 6.62817 * 9 7 6 11 11 C 1.54001 * 107.08164 * 154.52113 * 10 9 7 12 12 H 1.09001 * 110.32645 * 120.20281 * 11 10 9 13 13 C 1.53007 * 110.32631 * 242.31184 * 11 10 9 14 14 N 1.46494 * 109.47267 * 293.54607 * 13 11 10 15 15 C 1.36934 * 120.00222 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99921 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00314 * 180.02562 * 15 14 13 18 18 N 1.31621 * 119.99783 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00009 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47524 * 89.99564 * 19 17 15 21 21 H 1.48500 * 109.46804 * 209.99884 * 19 17 15 22 22 H 1.48498 * 109.47018 * 329.99285 * 19 17 15 23 23 C 1.54617 * 105.04499 * 1.30724 * 11 10 9 24 24 H 1.09005 * 110.74015 * 263.50822 * 23 11 10 25 25 C 1.53003 * 110.73864 * 140.36712 * 23 11 10 26 26 C 1.48117 * 127.03475 * 186.32027 * 9 7 6 27 27 C 1.40058 * 118.23362 * 359.97438 * 6 5 4 28 28 N 1.32011 * 118.98948 * 0.02562 * 27 6 5 29 29 H 1.09002 * 109.47084 * 60.00663 * 1 2 3 30 30 H 1.09006 * 109.46727 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47720 * 300.00224 * 1 2 3 32 32 H 1.07999 * 120.51213 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.91792 * 273.88541 * 10 9 7 34 34 H 1.09003 * 109.90899 * 35.16448 * 10 9 7 35 35 H 1.08997 * 109.46888 * 53.55063 * 13 11 10 36 36 H 1.09005 * 109.47014 * 173.54484 * 13 11 10 37 37 H 0.97004 * 119.99896 * 0.02562 * 14 13 11 38 38 H 0.97000 * 119.99847 * 180.02562 * 18 17 15 39 39 H 1.08998 * 109.46893 * 60.00121 * 25 23 11 40 40 H 1.09002 * 109.47012 * 180.02562 * 25 23 11 41 41 H 1.08996 * 109.46957 * 300.00187 * 25 23 11 42 42 H 1.09000 * 110.65964 * 337.76517 * 26 9 7 43 43 H 1.08996 * 110.66032 * 100.88139 * 26 9 7 44 44 H 1.08001 * 120.50553 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2055 0.0000 4 7 1.3028 2.3040 -0.0056 5 6 1.8628 3.4994 -0.0113 6 6 3.2603 3.5943 -0.0119 7 6 3.9304 4.9097 -0.0188 8 8 5.1302 4.9796 -0.2021 9 7 3.2121 6.0330 0.1782 10 6 1.7869 6.1228 0.5469 11 6 1.5897 7.4703 1.2659 12 1 0.8657 8.0835 0.7291 13 6 1.1269 7.2416 2.7062 14 7 -0.2138 6.6511 2.7004 15 6 -0.8369 6.3556 3.8834 16 1 -0.3398 6.5575 4.8207 17 6 -2.1070 5.7955 3.8779 18 7 -2.7126 5.5490 2.7356 19 14 -2.9573 5.3931 5.4918 20 1 -3.7474 6.5673 5.9413 21 1 -3.8626 4.2320 5.2981 22 1 -1.9378 5.0599 6.5188 23 6 2.9819 8.1428 1.2471 24 1 3.5103 7.9624 2.1832 25 6 2.8550 9.6439 0.9795 26 6 3.6942 7.4297 0.0749 27 6 4.0049 2.4081 -0.0059 28 7 3.3671 1.2523 -0.0003 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.2529 4.3906 -0.0155 33 1 1.1683 6.0864 -0.3498 34 1 1.5242 5.3032 1.2159 35 1 1.8196 6.5655 3.2073 36 1 1.1021 8.1942 3.2355 37 1 -0.6598 6.4687 1.8585 38 1 -3.6003 5.1580 2.7318 39 1 2.2530 10.1030 1.7637 40 1 3.8466 10.0964 0.9702 41 1 2.3750 9.8014 0.0137 42 1 4.7761 7.4733 0.1996 43 1 3.3976 7.8694 -0.8773 44 1 5.0845 2.4385 -0.0065 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106832041.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:11 Heat of formation + Delta-G solvation = 15.226775 kcal Electronic energy + Delta-G solvation = -27368.818775 eV Core-core repulsion = 23516.281605 eV Total energy + Delta-G solvation = -3852.537170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.54396 -40.10774 -38.48848 -37.79857 -34.72845 -34.20486 -33.16608 -31.79157 -31.30517 -29.16171 -27.93817 -26.56294 -25.98199 -24.66442 -24.04274 -23.23672 -21.28630 -20.12192 -20.03139 -18.90856 -18.31716 -17.32008 -16.92954 -16.55207 -16.04026 -15.65401 -15.34867 -14.90301 -14.60033 -14.56910 -14.25290 -13.83711 -13.80993 -13.44016 -13.40497 -12.92374 -12.79754 -12.62690 -12.14801 -12.11815 -12.01181 -11.76986 -11.49509 -11.40427 -11.15194 -11.08942 -10.92223 -10.69015 -10.54417 -10.43122 -10.07994 -9.99238 -9.73823 -9.34140 -9.22125 -8.96072 -8.73127 -7.01881 -5.84437 -3.13574 0.42468 0.91055 2.39024 2.73145 2.83342 3.38624 3.44715 3.45478 3.67903 3.84818 4.25140 4.36244 4.48497 4.50627 4.60882 4.69778 4.83649 4.84630 5.13797 5.18547 5.22342 5.31249 5.43663 5.47769 5.49921 5.52218 5.57986 5.63450 5.70932 5.74796 5.84441 5.90355 6.01417 6.08783 6.12805 6.21910 6.35186 6.48955 6.62539 6.73772 6.93919 7.40990 7.63881 7.85654 8.00992 8.33953 9.45873 10.00446 10.35271 11.37998 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.007719 B = 0.005427 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3626.697052 B = 5158.055709 C = 8316.903064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.287 6.287 3 C 0.515 3.485 4 N -0.559 5.559 5 C 0.211 3.789 6 C -0.287 4.287 7 C 0.598 3.402 8 O -0.542 6.542 9 N -0.614 5.614 10 C 0.087 3.913 11 C -0.102 4.102 12 H 0.091 0.909 13 C 0.160 3.840 14 N -0.733 5.733 15 C -0.242 4.242 16 H 0.069 0.931 17 C -0.010 4.010 18 N -0.931 5.931 19 Si 0.905 3.095 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.100 4.100 24 H 0.085 0.915 25 C -0.139 4.139 26 C 0.111 3.889 27 C 0.248 3.752 28 N -0.530 5.530 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.198 0.802 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.020 0.980 36 H 0.025 0.975 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.169 -0.598 -8.696 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.187 6.187 3 C 0.214 3.786 4 N -0.288 5.288 5 C 0.045 3.955 6 C -0.296 4.296 7 C 0.387 3.613 8 O -0.421 6.421 9 N -0.347 5.347 10 C -0.036 4.036 11 C -0.121 4.121 12 H 0.109 0.891 13 C 0.033 3.967 14 N -0.377 5.377 15 C -0.373 4.373 16 H 0.087 0.913 17 C -0.206 4.206 18 N -0.579 5.579 19 Si 0.736 3.264 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.208 1.208 23 C -0.120 4.120 24 H 0.103 0.897 25 C -0.197 4.197 26 C -0.011 4.011 27 C 0.080 3.920 28 N -0.255 5.255 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.090 0.910 32 H 0.214 0.786 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.038 0.962 36 H 0.043 0.957 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 10.360 -1.963 -8.633 13.627 hybrid contribution -0.755 0.555 0.714 1.178 sum 9.604 -1.407 -7.919 12.527 Atomic orbital electron populations 1.23121 0.74880 1.03771 1.03769 1.86040 1.24041 1.22638 1.85985 1.21085 0.86302 0.85191 0.86041 1.68261 1.40705 0.98921 1.20909 1.24510 0.91960 0.95702 0.83359 1.21472 0.96390 0.96290 1.15403 1.17174 0.85648 0.82081 0.76441 1.90772 1.13576 1.86591 1.51149 1.48634 1.11976 1.05817 1.68288 1.22781 0.80753 1.00469 0.99563 1.22408 0.96638 0.94444 0.98617 0.89087 1.20727 0.88167 0.96349 0.91480 1.42351 1.13943 1.74914 1.06494 1.19183 0.97858 1.34139 0.86121 0.91257 1.24708 0.97402 1.01756 0.96748 1.69639 1.15015 1.49534 1.23723 0.86230 0.79442 0.77650 0.83110 1.21659 1.21745 1.20814 1.22238 0.95785 0.95292 0.98716 0.89670 1.21719 1.01764 0.94015 1.02186 1.22514 1.00234 0.79801 0.98520 1.23292 1.00966 0.84259 0.83470 1.67711 1.07430 1.29741 1.20660 0.91476 0.87681 0.91023 0.78553 0.90652 0.88597 0.96227 0.95695 0.78332 0.93471 0.91704 0.92560 0.92372 0.89670 0.90714 0.79475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.35 101.05 1.05 1.49 16 2 O -0.29 -4.11 10.55 -17.58 -0.19 -4.29 16 3 C 0.51 8.02 8.48 -90.99 -0.77 7.25 16 4 N -0.56 -8.74 9.19 -14.39 -0.13 -8.88 16 5 C 0.21 3.05 9.62 -16.79 -0.16 2.89 16 6 C -0.29 -4.04 5.88 -104.70 -0.62 -4.65 16 7 C 0.60 8.69 7.82 -12.43 -0.10 8.59 16 8 O -0.54 -8.95 16.67 5.30 0.09 -8.87 16 9 N -0.61 -8.03 3.29 -171.17 -0.56 -8.59 16 10 C 0.09 1.15 4.34 -2.98 -0.01 1.13 16 11 C -0.10 -1.37 2.64 -89.24 -0.24 -1.61 16 12 H 0.09 1.21 7.85 -51.93 -0.41 0.80 16 13 C 0.16 2.88 5.35 -4.04 -0.02 2.86 16 14 N -0.73 -16.84 5.33 -59.91 -0.32 -17.16 16 15 C -0.24 -6.42 9.99 -15.06 -0.15 -6.57 16 16 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 18 N -0.93 -26.64 13.06 55.49 0.72 -25.91 16 19 Si 0.90 21.76 29.55 -169.99 -5.02 16.74 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C -0.10 -1.12 3.19 -88.93 -0.28 -1.40 16 24 H 0.08 1.01 7.87 -51.93 -0.41 0.60 16 25 C -0.14 -1.28 9.17 37.16 0.34 -0.94 16 26 C 0.11 1.24 6.55 -2.32 -0.02 1.22 16 27 C 0.25 3.36 10.87 -16.79 -0.18 3.18 16 28 N -0.53 -8.05 10.45 -14.39 -0.15 -8.20 16 29 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 32 H 0.20 2.67 3.68 -52.49 -0.19 2.48 16 33 H 0.08 0.88 7.40 -51.93 -0.38 0.50 16 34 H 0.10 1.49 5.46 -51.93 -0.28 1.20 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.38 9.10 7.51 -40.82 -0.31 8.79 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.49 8.11 -51.93 -0.42 0.07 16 42 H 0.08 0.97 7.81 -51.93 -0.41 0.56 16 43 H 0.07 0.72 8.02 -51.93 -0.42 0.30 16 44 H 0.19 2.11 7.77 -52.49 -0.41 1.70 16 LS Contribution 363.65 15.07 5.48 5.48 Total: -1.00 -32.04 363.65 -7.47 -39.51 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.13 Total: 7.09 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: -1.26 Total: 13.08 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -0.44 Total: -68.74 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.10 Total: -13.16 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.04 -7.47 -39.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106832041.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.736 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds