Wall clock time and date at job start Fri Apr 10 2020 18:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35297 * 116.99927 * 2 1 4 4 N 1.32471 * 119.02057 * 359.72164 * 3 2 1 5 5 C 1.32008 * 120.91909 * 180.27865 * 4 3 2 6 6 C 1.40066 * 118.98585 * 0.02562 * 5 4 3 7 7 C 1.47626 * 120.88069 * 179.97438 * 6 5 4 8 8 O 1.21577 * 119.99865 * 189.99877 * 7 6 5 9 9 N 1.34778 * 120.00268 * 10.00499 * 7 6 5 10 10 C 1.47490 * 127.03254 * 6.62817 * 9 7 6 11 11 C 1.54001 * 107.08164 * 154.52113 * 10 9 7 12 12 H 1.09001 * 110.32645 * 120.20281 * 11 10 9 13 13 C 1.53007 * 110.32631 * 242.31184 * 11 10 9 14 14 N 1.46494 * 109.47267 * 293.54607 * 13 11 10 15 15 C 1.36934 * 120.00222 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99921 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00314 * 180.02562 * 15 14 13 18 18 N 1.31621 * 119.99783 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00009 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47524 * 89.99564 * 19 17 15 21 21 H 1.48500 * 109.46804 * 209.99884 * 19 17 15 22 22 H 1.48498 * 109.47018 * 329.99285 * 19 17 15 23 23 C 1.54617 * 105.04499 * 1.30724 * 11 10 9 24 24 H 1.09005 * 110.74015 * 263.50822 * 23 11 10 25 25 C 1.53003 * 110.73864 * 140.36712 * 23 11 10 26 26 C 1.48117 * 127.03475 * 186.32027 * 9 7 6 27 27 C 1.40058 * 118.23362 * 359.97438 * 6 5 4 28 28 N 1.32011 * 118.98948 * 0.02562 * 27 6 5 29 29 H 1.09002 * 109.47084 * 60.00663 * 1 2 3 30 30 H 1.09006 * 109.46727 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47720 * 300.00224 * 1 2 3 32 32 H 1.07999 * 120.51213 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.91792 * 273.88541 * 10 9 7 34 34 H 1.09003 * 109.90899 * 35.16448 * 10 9 7 35 35 H 1.08997 * 109.46888 * 53.55063 * 13 11 10 36 36 H 1.09005 * 109.47014 * 173.54484 * 13 11 10 37 37 H 0.97004 * 119.99896 * 0.02562 * 14 13 11 38 38 H 0.97000 * 119.99847 * 180.02562 * 18 17 15 39 39 H 1.08998 * 109.46893 * 60.00121 * 25 23 11 40 40 H 1.09002 * 109.47012 * 180.02562 * 25 23 11 41 41 H 1.08996 * 109.46957 * 300.00187 * 25 23 11 42 42 H 1.09000 * 110.65964 * 337.76517 * 26 9 7 43 43 H 1.08996 * 110.66032 * 100.88139 * 26 9 7 44 44 H 1.08001 * 120.50553 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2055 0.0000 4 7 1.3028 2.3040 -0.0056 5 6 1.8628 3.4994 -0.0113 6 6 3.2603 3.5943 -0.0119 7 6 3.9304 4.9097 -0.0188 8 8 5.1302 4.9796 -0.2021 9 7 3.2121 6.0330 0.1782 10 6 1.7869 6.1228 0.5469 11 6 1.5897 7.4703 1.2659 12 1 0.8657 8.0835 0.7291 13 6 1.1269 7.2416 2.7062 14 7 -0.2138 6.6511 2.7004 15 6 -0.8369 6.3556 3.8834 16 1 -0.3398 6.5575 4.8207 17 6 -2.1070 5.7955 3.8779 18 7 -2.7126 5.5490 2.7356 19 14 -2.9573 5.3931 5.4918 20 1 -3.7474 6.5673 5.9413 21 1 -3.8626 4.2320 5.2981 22 1 -1.9378 5.0599 6.5188 23 6 2.9819 8.1428 1.2471 24 1 3.5103 7.9624 2.1832 25 6 2.8550 9.6439 0.9795 26 6 3.6942 7.4297 0.0749 27 6 4.0049 2.4081 -0.0059 28 7 3.3671 1.2523 -0.0003 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.2529 4.3906 -0.0155 33 1 1.1683 6.0864 -0.3498 34 1 1.5242 5.3032 1.2159 35 1 1.8196 6.5655 3.2073 36 1 1.1021 8.1942 3.2355 37 1 -0.6598 6.4687 1.8585 38 1 -3.6003 5.1580 2.7318 39 1 2.2530 10.1030 1.7637 40 1 3.8466 10.0964 0.9702 41 1 2.3750 9.8014 0.0137 42 1 4.7761 7.4733 0.1996 43 1 3.3976 7.8694 -0.8773 44 1 5.0845 2.4385 -0.0065 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106832041.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:10 Heat of formation + Delta-G solvation = -8.800384 kcal Electronic energy + Delta-G solvation = -27369.860671 eV Core-core repulsion = 23516.281605 eV Total energy + Delta-G solvation = -3853.579066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.66777 -41.20295 -39.57055 -38.95531 -36.40606 -35.36676 -34.31682 -33.35954 -32.50832 -30.60413 -28.89733 -27.51431 -27.35751 -25.96876 -25.19998 -24.76709 -22.59071 -21.18275 -21.14093 -20.00565 -19.47866 -19.06955 -18.18032 -17.64695 -17.11941 -16.79648 -16.69751 -16.36152 -15.88256 -15.59483 -15.38962 -15.22109 -15.11581 -14.92050 -14.67965 -14.13304 -13.93990 -13.64667 -13.29194 -13.19640 -13.02515 -12.95900 -12.91034 -12.73038 -12.51381 -12.45497 -12.22786 -12.15264 -11.92157 -11.78500 -11.49393 -11.35786 -11.17034 -10.91513 -10.48694 -10.34849 -9.79661 -8.96220 -7.93178 -5.20221 -0.71315 -0.20739 1.34683 1.47831 1.48446 1.55881 1.58670 1.77088 2.54013 2.56575 2.73822 3.16358 3.27228 3.40571 3.43393 3.54581 3.62274 3.74398 3.81437 4.16329 4.24979 4.30076 4.31964 4.39821 4.46103 4.52886 4.57740 4.63341 4.72291 4.74313 4.77744 4.83603 4.90349 5.03924 5.10915 5.21923 5.28274 5.37525 5.38950 5.51987 5.58076 5.83551 6.29368 6.30690 6.72260 6.88863 7.37659 8.11631 8.36465 9.29304 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.007719 B = 0.005427 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3626.697052 B = 5158.055709 C = 8316.903064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.295 6.295 3 C 0.504 3.496 4 N -0.575 5.575 5 C 0.208 3.792 6 C -0.289 4.289 7 C 0.599 3.401 8 O -0.563 6.563 9 N -0.611 5.611 10 C 0.090 3.910 11 C -0.093 4.093 12 H 0.100 0.900 13 C 0.162 3.838 14 N -0.740 5.740 15 C -0.244 4.244 16 H 0.069 0.931 17 C -0.065 4.065 18 N -0.959 5.959 19 Si 0.961 3.039 20 H -0.287 1.287 21 H -0.296 1.296 22 H -0.276 1.276 23 C -0.090 4.090 24 H 0.076 0.924 25 C -0.135 4.135 26 C 0.111 3.889 27 C 0.251 3.749 28 N -0.543 5.543 29 H 0.069 0.931 30 H 0.140 0.860 31 H 0.056 0.944 32 H 0.204 0.796 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.010 0.990 36 H 0.026 0.974 37 H 0.378 0.622 38 H 0.251 0.749 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.852 0.268 -9.065 14.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.196 6.196 3 C 0.203 3.797 4 N -0.304 5.304 5 C 0.042 3.958 6 C -0.297 4.297 7 C 0.388 3.612 8 O -0.444 6.444 9 N -0.343 5.343 10 C -0.032 4.032 11 C -0.112 4.112 12 H 0.118 0.882 13 C 0.036 3.964 14 N -0.383 5.383 15 C -0.376 4.376 16 H 0.087 0.913 17 C -0.258 4.258 18 N -0.610 5.610 19 Si 0.791 3.209 20 H -0.214 1.214 21 H -0.223 1.223 22 H -0.202 1.202 23 C -0.110 4.110 24 H 0.095 0.905 25 C -0.192 4.192 26 C -0.010 4.010 27 C 0.084 3.916 28 N -0.268 5.268 29 H 0.088 0.912 30 H 0.158 0.842 31 H 0.075 0.925 32 H 0.220 0.780 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.028 0.972 36 H 0.044 0.956 37 H 0.211 0.789 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.116 0.884 44 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 11.063 -1.062 -8.988 14.294 hybrid contribution -0.930 0.313 0.857 1.303 sum 10.133 -0.749 -8.131 13.013 Atomic orbital electron populations 1.23346 0.73378 1.05870 1.03113 1.86046 1.25531 1.22222 1.85758 1.21323 0.86649 0.85592 0.86152 1.68267 1.41129 0.99310 1.21720 1.24643 0.92354 0.95632 0.83141 1.21490 0.96186 0.96511 1.15498 1.17163 0.85376 0.82393 0.76304 1.90760 1.14312 1.86872 1.52451 1.48660 1.11816 1.06416 1.67424 1.22707 0.81172 0.99420 0.99912 1.22295 0.98255 0.95038 0.95628 0.88193 1.20817 0.85625 0.95409 0.94594 1.42483 1.15529 1.75018 1.05257 1.19509 0.97936 1.32847 0.87327 0.91327 1.25373 0.98353 1.02720 0.99370 1.69760 1.15067 1.50887 1.25258 0.85334 0.78369 0.77084 0.80140 1.21390 1.22267 1.20151 1.22179 0.93742 0.96582 0.98528 0.90524 1.21700 1.02844 0.92143 1.02545 1.22695 1.00303 0.78477 0.99494 1.23668 1.01870 0.83724 0.82329 1.67773 1.07382 1.30400 1.21258 0.91247 0.84228 0.92487 0.78024 0.88707 0.90946 0.97239 0.95586 0.78929 0.94022 0.92411 0.90880 0.91175 0.89577 0.88400 0.77354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.35 113.37 1.17 1.99 16 2 O -0.30 -8.41 10.55 -85.83 -0.91 -9.31 16 3 C 0.50 15.74 8.48 180.48 1.53 17.27 16 4 N -0.57 -18.13 9.19 -312.40 -2.87 -21.00 16 5 C 0.21 6.01 9.62 85.11 0.82 6.83 16 6 C -0.29 -7.97 5.88 -19.91 -0.12 -8.09 16 7 C 0.60 16.75 7.82 86.72 0.68 17.43 16 8 O -0.56 -17.90 16.67 -3.96 -0.07 -17.97 16 9 N -0.61 -15.00 3.29 -813.73 -2.68 -17.68 16 10 C 0.09 2.28 4.34 86.53 0.38 2.66 16 11 C -0.09 -2.36 2.64 -9.90 -0.03 -2.39 16 12 H 0.10 2.43 7.85 -2.39 -0.02 2.41 16 13 C 0.16 5.72 5.35 86.38 0.46 6.18 16 14 N -0.74 -33.91 5.33 -343.45 -1.83 -35.74 16 15 C -0.24 -12.94 9.99 84.03 0.84 -12.10 16 16 H 0.07 3.57 7.83 -2.91 -0.02 3.55 16 17 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 18 N -0.96 -55.31 13.06 21.65 0.28 -55.03 16 19 Si 0.96 44.78 29.55 68.60 2.03 46.81 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 21 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 23 C -0.09 -1.80 3.19 -9.70 -0.03 -1.83 16 24 H 0.08 1.68 7.87 -2.38 -0.02 1.67 16 25 C -0.13 -2.07 9.17 71.98 0.66 -1.41 16 26 C 0.11 2.18 6.55 86.61 0.57 2.75 16 27 C 0.25 6.68 10.87 85.11 0.93 7.60 16 28 N -0.54 -16.33 10.45 -312.41 -3.26 -19.60 16 29 H 0.07 1.46 8.08 -2.39 -0.02 1.44 16 30 H 0.14 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.06 1.40 8.09 -2.39 -0.02 1.38 16 32 H 0.20 5.47 3.68 -2.91 -0.01 5.46 16 33 H 0.10 2.07 7.40 -2.39 -0.02 2.05 16 34 H 0.07 2.23 5.46 -2.39 -0.01 2.22 16 35 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.38 17.98 7.51 -92.70 -0.70 17.28 16 38 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.94 8.11 -2.39 -0.02 0.92 16 42 H 0.09 1.74 7.81 -2.39 -0.02 1.72 16 43 H 0.10 1.53 8.02 -2.39 -0.02 1.51 16 44 H 0.21 4.47 7.77 -2.91 -0.02 4.44 16 Total: -1.00 -67.97 363.65 -0.65 -68.62 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 0.34 Total: 27.11 kcal Atomic # 6 Polarization: 25.47 SS G_CDS: 8.32 Total: 33.79 kcal Atomic # 7 Polarization: -138.68 SS G_CDS: -10.36 Total: -149.05 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.97 Total: -27.28 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -67.97 -0.65 -68.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106832041.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.819 kcal (2) G-P(sol) polarization free energy of solvation -67.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds