Wall clock time and date at job start Fri Apr 10 2020 18:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35518 * 116.99969 * 2 1 4 4 C 1.39352 * 120.02695 * 179.97438 * 3 2 1 5 5 C 1.38423 * 118.03481 * 179.97438 * 4 3 2 6 6 C 1.39978 * 117.96899 * 0.25811 * 5 4 3 7 7 C 1.47938 * 120.11410 * 179.72388 * 6 5 4 8 8 O 1.21544 * 120.00040 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99700 * 179.97438 * 7 6 5 10 10 C 1.48116 * 127.03062 * 179.70636 * 9 7 6 11 11 C 1.54593 * 103.42215 * 219.28805 * 10 9 7 12 12 H 1.08997 * 110.57574 * 81.17206 * 11 10 9 13 13 C 1.52999 * 110.99008 * 204.37595 * 11 10 9 14 14 N 1.46505 * 109.47263 * 288.65173 * 13 11 10 15 15 C 1.36935 * 120.00147 * 179.97438 * 14 13 11 16 16 H 1.08002 * 120.00057 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99865 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00108 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00064 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47105 * 90.00046 * 19 17 15 21 21 H 1.48493 * 109.47184 * 210.00152 * 19 17 15 22 22 H 1.48497 * 109.47104 * 330.00087 * 19 17 15 23 23 C 1.54624 * 102.91370 * 322.87013 * 11 10 9 24 24 H 1.09006 * 110.40984 * 262.76343 * 23 11 10 25 25 C 1.53001 * 110.32687 * 140.59260 * 23 11 10 26 26 C 1.47483 * 127.03385 * 0.02669 * 9 7 6 27 27 N 1.32750 * 119.76501 * 359.48089 * 6 5 4 28 28 N 1.28355 * 122.08790 * 0.53602 * 27 6 5 29 29 H 1.09001 * 109.46702 * 299.99782 * 1 2 3 30 30 H 1.09000 * 109.46845 * 59.99612 * 1 2 3 31 31 H 1.08998 * 109.47038 * 179.97438 * 1 2 3 32 32 H 1.08002 * 120.98519 * 0.02562 * 4 3 2 33 33 H 1.08002 * 121.01145 * 179.97438 * 5 4 3 34 34 H 1.08993 * 110.66547 * 337.77332 * 10 9 7 35 35 H 1.09002 * 110.65823 * 100.88733 * 10 9 7 36 36 H 1.09001 * 109.47338 * 48.65128 * 13 11 10 37 37 H 1.08998 * 109.47436 * 168.65290 * 13 11 10 38 38 H 0.97003 * 119.99520 * 359.97438 * 14 13 11 39 39 H 0.97002 * 120.00395 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.47005 * 302.92595 * 25 23 11 41 41 H 1.09000 * 109.47364 * 62.92457 * 25 23 11 42 42 H 1.08996 * 109.46685 * 182.92660 * 25 23 11 43 43 H 1.08996 * 109.91174 * 273.87446 * 26 9 7 44 44 H 1.09001 * 109.91527 * 34.96471 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 3.4358 1.2811 0.0005 5 6 4.0210 2.5355 0.0000 6 6 3.1781 3.6531 0.0045 7 6 3.7529 5.0162 0.0102 8 8 4.9589 5.1672 0.0116 9 7 2.9392 6.0906 0.0140 10 6 3.3432 7.5156 0.0260 11 6 2.3169 8.1716 0.9780 12 1 2.6045 8.0154 2.0177 13 6 2.1671 9.6643 0.6779 14 7 3.3756 10.3725 1.1071 15 6 3.4716 11.7279 0.9376 16 1 2.6561 12.2750 0.4879 17 6 4.6169 12.3988 1.3438 18 7 5.6109 11.7320 1.8914 19 14 4.7482 14.2477 1.1120 20 1 4.2177 14.9364 2.3160 21 1 6.1715 14.6220 0.9144 22 1 3.9595 14.6545 -0.0787 23 6 1.0093 7.4135 0.6519 24 1 0.4043 7.9848 -0.0523 25 6 0.2182 7.1427 1.9332 26 6 1.4643 6.0879 0.0137 27 7 1.8613 3.4854 -0.0014 28 7 1.3223 2.3205 -0.0009 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0400 0.3858 0.0005 33 1 5.0951 2.6485 0.0008 34 1 4.3545 7.6254 0.4173 35 1 3.2674 7.9452 -0.9729 36 1 2.0234 9.8070 -0.3931 37 1 1.3048 10.0583 1.2158 38 1 4.1078 9.8812 1.5113 39 1 6.4114 12.2007 2.1749 40 1 0.8392 6.5819 2.6319 41 1 -0.0744 8.0897 2.3866 42 1 -0.6735 6.5634 1.6940 43 1 1.0935 6.0218 -1.0091 44 1 1.0945 5.2452 0.5978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106835775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:15 Heat of formation + Delta-G solvation = 11.321442 kcal Electronic energy + Delta-G solvation = -26655.459169 eV Core-core repulsion = 22802.752650 eV Total energy + Delta-G solvation = -3852.706518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.72866 -40.01327 -38.84171 -37.83324 -34.66998 -33.68390 -32.98344 -32.08788 -31.32470 -29.11065 -28.06782 -26.60864 -25.88407 -25.04301 -24.13705 -23.08609 -21.27550 -20.24007 -19.86148 -19.06902 -18.32793 -17.46538 -16.89805 -16.78256 -15.98560 -15.73847 -15.07188 -14.96963 -14.69954 -14.44585 -14.41834 -14.03511 -13.87925 -13.45273 -13.18108 -13.02865 -12.85080 -12.67174 -12.47014 -12.29769 -12.02408 -11.92393 -11.56177 -11.19878 -11.06833 -10.82721 -10.73606 -10.50567 -10.42509 -10.30944 -10.11126 -10.02373 -9.94145 -9.62524 -9.58977 -8.84857 -8.58170 -6.89106 -5.72466 -3.01664 0.17567 0.31305 2.35066 2.47447 2.81064 3.34989 3.46406 3.51229 3.53297 3.55153 3.82542 4.22735 4.42718 4.49960 4.60796 4.73571 4.75915 4.82224 4.86640 4.99981 5.02359 5.15595 5.31504 5.42710 5.54142 5.59107 5.62677 5.65036 5.74037 5.90714 5.98294 6.06657 6.12721 6.17808 6.25393 6.28331 6.44290 6.46432 6.55043 6.75997 6.89160 7.52459 7.73163 7.93731 8.14689 8.45810 9.57002 10.14511 10.48892 11.50215 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027250 B = 0.002529 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.284831 B =11067.678148 C =11869.000015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.297 6.297 3 C 0.276 3.724 4 C -0.139 4.139 5 C -0.031 4.031 6 C 0.002 3.998 7 C 0.590 3.410 8 O -0.530 6.530 9 N -0.598 5.598 10 C 0.114 3.886 11 C -0.102 4.102 12 H 0.084 0.916 13 C 0.165 3.835 14 N -0.733 5.733 15 C -0.240 4.240 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.102 4.102 24 H 0.087 0.913 25 C -0.139 4.139 26 C 0.102 3.898 27 N -0.165 5.165 28 N -0.302 5.302 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.164 0.836 33 H 0.171 0.829 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.067 0.933 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.337 -25.415 -4.050 28.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.201 6.201 3 C 0.092 3.908 4 C -0.168 4.168 5 C -0.059 4.059 6 C -0.147 4.147 7 C 0.376 3.624 8 O -0.406 6.406 9 N -0.329 5.329 10 C -0.007 4.007 11 C -0.122 4.122 12 H 0.102 0.898 13 C 0.037 3.963 14 N -0.378 5.378 15 C -0.371 4.371 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.122 4.122 24 H 0.105 0.895 25 C -0.197 4.197 26 C -0.021 4.021 27 N -0.013 5.013 28 N -0.160 5.160 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.182 0.818 33 H 0.189 0.811 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.040 0.960 37 H 0.042 0.958 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.066 -24.897 -4.117 27.971 hybrid contribution 1.443 0.259 0.020 1.466 sum -10.623 -24.638 -4.097 27.142 Atomic orbital electron populations 1.23077 0.76105 1.03821 1.03229 1.86217 1.23788 1.23257 1.86831 1.21672 0.91075 0.87175 0.90925 1.21545 0.92216 0.99901 1.03187 1.22328 1.03162 0.89963 0.90470 1.22740 0.91986 0.96177 1.03782 1.16958 0.85486 0.82018 0.77986 1.90848 1.13263 1.85239 1.51217 1.48658 1.07964 1.06403 1.69895 1.22617 1.00444 0.77292 1.00383 1.22523 0.93468 0.96224 0.99967 0.89799 1.20628 0.91107 0.87565 0.96972 1.42385 1.16069 1.05344 1.73956 1.19207 1.00461 0.83895 1.33524 0.91179 1.24750 0.96668 0.97950 1.01639 1.69661 1.06793 1.34596 1.46993 0.86195 0.76782 0.85571 0.77659 1.21777 1.21808 1.20785 1.22141 0.96856 0.95142 0.98046 0.89477 1.21812 0.99426 1.01834 0.96613 1.22562 0.78925 0.99085 1.01509 1.73225 1.10003 1.13274 1.04823 1.73223 1.31470 0.94116 1.17184 0.91575 0.91599 0.87892 0.81827 0.81127 0.89058 0.90279 0.96027 0.95810 0.78217 0.93502 0.92813 0.92002 0.92645 0.91491 0.88187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.39 101.05 1.05 1.23 16 2 O -0.30 -2.41 10.48 -18.25 -0.19 -2.60 16 3 C 0.28 2.62 7.57 -16.77 -0.13 2.50 16 4 C -0.14 -1.11 10.14 -39.10 -0.40 -1.51 16 5 C -0.03 -0.30 9.72 -38.86 -0.38 -0.68 16 6 C 0.00 0.02 6.81 -82.85 -0.56 -0.54 16 7 C 0.59 9.10 7.88 -12.29 -0.10 9.01 16 8 O -0.53 -9.65 16.60 5.33 0.09 -9.57 16 9 N -0.60 -8.93 3.29 -171.06 -0.56 -9.49 16 10 C 0.11 1.89 6.44 -2.32 -0.01 1.88 16 11 C -0.10 -1.64 2.60 -88.93 -0.23 -1.87 16 12 H 0.08 1.45 7.86 -51.93 -0.41 1.04 16 13 C 0.17 3.22 5.59 -4.04 -0.02 3.20 16 14 N -0.73 -18.48 5.52 -59.91 -0.33 -18.81 16 15 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -28.57 13.06 55.49 0.72 -27.84 16 19 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 23 C -0.10 -1.29 3.17 -89.24 -0.28 -1.57 16 24 H 0.09 1.02 7.86 -51.93 -0.41 0.62 16 25 C -0.14 -1.58 8.90 37.16 0.33 -1.25 16 26 C 0.10 1.27 5.74 -2.98 -0.02 1.26 16 27 N -0.17 -2.03 7.92 33.32 0.26 -1.77 16 28 N -0.30 -3.38 10.40 30.54 0.32 -3.07 16 29 H 0.07 0.38 8.11 -51.93 -0.42 -0.05 16 30 H 0.07 0.37 8.11 -51.93 -0.42 -0.05 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.17 1.41 7.71 -52.49 -0.40 1.01 16 34 H 0.09 1.74 7.85 -51.93 -0.41 1.34 16 35 H 0.08 1.31 7.95 -51.93 -0.41 0.90 16 36 H 0.02 0.42 8.00 -51.93 -0.42 0.01 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.38 10.28 7.67 -40.82 -0.31 9.97 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.05 0.64 8.13 -51.93 -0.42 0.21 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 1.22 5.43 -51.93 -0.28 0.94 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -33.64 368.16 -6.56 -40.21 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.40 Total: 5.54 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -1.00 Total: 4.28 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: 0.41 Total: -60.99 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.10 Total: -12.17 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.64 -6.56 -40.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106835775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.527 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds