Wall clock time and date at job start Fri Apr 10 2020 18:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.28935 * 2 1 4 4 C 1.54001 * 110.32432 * 237.86505 * 2 1 3 5 5 N 1.47490 * 107.08481 * 242.41091 * 4 2 1 6 6 C 1.34777 * 127.03577 * 154.51614 * 5 4 2 7 7 O 1.21548 * 119.99983 * 180.02562 * 6 5 4 8 8 C 1.47883 * 119.99594 * 0.03092 * 6 5 4 9 9 C 1.41583 * 119.89133 * 180.24631 * 8 6 5 10 10 C 1.36324 * 118.23948 * 180.26597 * 9 8 6 11 11 C 1.41274 * 117.93150 * 359.49419 * 10 9 8 12 12 O 1.21977 * 120.22679 * 180.29663 * 11 10 9 13 13 N 1.34607 * 119.54849 * 0.27771 * 11 10 9 14 14 C 1.46508 * 119.09894 * 180.02562 * 13 11 10 15 15 N 1.28388 * 121.80466 * 359.97438 * 13 11 10 16 16 C 1.48113 * 105.92991 * 334.78432 * 5 4 2 17 17 C 1.54597 * 103.42616 * 39.01991 * 16 5 4 18 18 H 1.09005 * 110.57604 * 81.17130 * 17 16 5 19 19 C 1.52999 * 110.99017 * 204.37128 * 17 16 5 20 20 N 1.46501 * 109.47672 * 288.65278 * 19 17 16 21 21 C 1.36932 * 120.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00066 * 0.02562 * 21 20 19 23 23 C 1.38814 * 120.00213 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00423 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 119.99676 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47069 * 90.00252 * 25 23 21 27 27 H 1.48497 * 109.46690 * 210.00251 * 25 23 21 28 28 H 1.48498 * 109.47195 * 330.00191 * 25 23 21 29 29 H 1.09001 * 109.47148 * 180.68025 * 1 2 3 30 30 H 1.09003 * 109.47090 * 300.68204 * 1 2 3 31 31 H 1.09000 * 109.47230 * 60.67954 * 1 2 3 32 32 H 1.09004 * 109.91475 * 123.05608 * 4 2 1 33 33 H 1.08997 * 110.07359 * 1.86243 * 4 2 1 34 34 H 1.08000 * 120.88469 * 0.03790 * 9 8 6 35 35 H 1.08002 * 121.03842 * 179.77228 * 10 9 8 36 36 H 1.08994 * 109.47233 * 89.99571 * 14 13 11 37 37 H 1.08996 * 109.46832 * 209.99971 * 14 13 11 38 38 H 1.08992 * 109.46772 * 329.99624 * 14 13 11 39 39 H 1.08997 * 110.66569 * 157.50597 * 16 5 4 40 40 H 1.09004 * 110.66129 * 280.61889 * 16 5 4 41 41 H 1.09006 * 109.47292 * 48.65644 * 19 17 16 42 42 H 1.09008 * 109.47142 * 168.65255 * 19 17 16 43 43 H 0.97004 * 119.99327 * 0.02562 * 20 19 17 44 44 H 0.96993 * 120.00684 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0649 -0.7682 -1.2229 5 7 2.8277 -1.9217 -0.7103 6 6 3.0613 -3.0873 -1.3454 7 8 3.7106 -3.9576 -0.7990 8 6 2.5278 -3.3073 -2.7069 9 6 2.7701 -4.5346 -3.3700 10 6 2.2673 -4.6993 -4.6263 11 6 1.5242 -3.6362 -5.1863 12 8 1.0506 -3.7408 -6.3055 13 7 1.3421 -2.5073 -4.4762 14 6 0.5694 -1.4113 -5.0662 15 7 1.8262 -2.3650 -3.2956 16 6 3.2788 -1.5397 0.6477 17 6 2.0671 -0.7735 1.2262 18 1 1.3174 -1.4699 1.6020 19 6 2.5053 0.1937 2.3277 20 7 2.8961 -0.5659 3.5178 21 6 3.3277 0.0917 4.6387 22 1 3.3796 1.1705 4.6455 23 6 3.6985 -0.6281 5.7662 24 7 4.1129 0.0039 6.8437 25 14 3.6081 -2.4939 5.7546 26 1 4.9009 -3.0492 5.2797 27 1 3.3336 -2.9847 7.1290 28 1 2.5179 -2.9310 4.8459 29 1 -0.3633 -1.0276 0.0122 30 1 -0.3633 0.5244 0.8838 31 1 -0.3634 0.5032 -0.8960 32 1 2.7181 -0.1227 -1.8102 33 1 1.2353 -1.1156 -1.8386 34 1 3.3414 -5.3182 -2.8945 35 1 2.4281 -5.6157 -5.1748 36 1 -0.4836 -1.5308 -4.8114 37 1 0.9319 -0.4602 -4.6763 38 1 0.6850 -1.4275 -6.1499 39 1 3.4935 -2.4258 1.2452 40 1 4.1523 -0.8898 0.5942 41 1 3.3533 0.7827 1.9779 42 1 1.6788 0.8594 2.5767 43 1 2.8499 -1.5348 3.5115 44 1 4.3723 -0.4990 7.6315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106956043.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:18 Heat of formation + Delta-G solvation = 1.629780 kcal Electronic energy + Delta-G solvation = -27130.854739 eV Core-core repulsion = 23277.727958 eV Total energy + Delta-G solvation = -3853.126780 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.30177 -41.24029 -39.37285 -38.85844 -36.60970 -36.00339 -34.34185 -33.29852 -32.71780 -30.99174 -29.49223 -27.67692 -27.22190 -26.15141 -24.86334 -24.44677 -22.71185 -21.50872 -21.19272 -19.79679 -19.49748 -18.65530 -18.01870 -17.92085 -17.24199 -17.12299 -16.57115 -16.52527 -15.89309 -15.56076 -15.14550 -14.99929 -14.74921 -14.64843 -14.59613 -14.40354 -14.02032 -13.82467 -13.72925 -13.56302 -13.50112 -13.37342 -13.06091 -12.81906 -12.57062 -12.46475 -12.09166 -11.84649 -11.73802 -11.57848 -11.55584 -11.51280 -11.39357 -10.97035 -10.87761 -9.89206 -9.69439 -9.27451 -8.01772 -5.34197 -0.74001 -0.09115 0.96284 1.38575 1.40980 1.47116 1.57480 1.70694 2.33344 2.48480 2.67476 3.27511 3.30738 3.50054 3.54550 3.59456 3.66198 3.81138 4.01210 4.28657 4.31263 4.35730 4.37428 4.45942 4.51428 4.51926 4.58091 4.71494 4.74251 4.77398 4.83010 4.87727 4.88667 4.91694 5.09033 5.12533 5.22335 5.26926 5.38372 5.56343 5.78266 6.22582 6.26939 6.36901 6.68458 6.88689 7.09540 7.86634 8.03220 9.19766 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022433 B = 0.003006 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.866659 B = 9313.758580 C =10266.679505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 H 0.104 0.896 4 C 0.105 3.895 5 N -0.601 5.601 6 C 0.598 3.402 7 O -0.565 6.565 8 C 0.015 3.985 9 C -0.028 4.028 10 C -0.186 4.186 11 C 0.470 3.530 12 O -0.558 6.558 13 N -0.334 5.334 14 C 0.066 3.934 15 N -0.163 5.163 16 C 0.111 3.889 17 C -0.098 4.098 18 H 0.076 0.924 19 C 0.167 3.833 20 N -0.761 5.761 21 C -0.229 4.229 22 H 0.062 0.938 23 C -0.062 4.062 24 N -0.983 5.983 25 Si 0.947 3.053 26 H -0.281 1.281 27 H -0.296 1.296 28 H -0.255 1.255 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.174 0.826 35 H 0.190 0.810 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.101 0.899 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.363 0.637 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.817 -3.540 -28.349 29.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.112 4.112 3 H 0.122 0.878 4 C -0.017 4.017 5 N -0.332 5.332 6 C 0.385 3.615 7 O -0.442 6.442 8 C -0.155 4.155 9 C -0.051 4.051 10 C -0.215 4.215 11 C 0.271 3.729 12 O -0.438 6.438 13 N -0.155 5.155 14 C -0.072 4.072 15 N 0.005 4.995 16 C -0.011 4.011 17 C -0.118 4.118 18 H 0.094 0.906 19 C 0.041 3.959 20 N -0.407 5.407 21 C -0.360 4.360 22 H 0.080 0.920 23 C -0.253 4.253 24 N -0.634 5.634 25 Si 0.775 3.225 26 H -0.207 1.207 27 H -0.223 1.223 28 H -0.180 1.180 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.126 0.874 34 H 0.192 0.808 35 H 0.207 0.793 36 H 0.119 0.881 37 H 0.142 0.858 38 H 0.120 0.880 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.196 0.804 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.044 -3.074 -28.574 30.128 hybrid contribution 0.563 -1.819 0.667 2.018 sum -8.481 -4.893 -27.907 29.575 Atomic orbital electron populations 1.21818 0.92871 1.01828 1.03030 1.22132 0.97400 1.00038 0.91610 0.87803 1.22726 0.96809 0.85854 0.96289 1.48691 1.52237 1.14881 1.17380 1.17072 0.79913 0.80951 0.83598 1.90836 1.42360 1.43979 1.67047 1.21464 1.03651 0.93961 0.96401 1.22302 0.93691 0.95885 0.93223 1.22877 1.00876 1.01196 0.96578 1.18416 0.83392 0.84330 0.86803 1.90969 1.52472 1.80940 1.19442 1.47106 1.41527 1.17111 1.09787 1.22621 0.96327 0.87848 1.00436 1.71363 1.04095 1.27265 0.96789 1.22492 0.97673 0.99191 0.81737 1.22413 0.96647 0.97441 0.95305 0.90587 1.20787 0.97333 0.93133 0.84611 1.42801 1.80735 1.04869 1.12247 1.19051 1.34008 0.92195 0.90713 0.91987 1.25429 1.02027 1.02106 0.95787 1.69860 1.52842 1.36235 1.04474 0.85520 0.78614 0.81511 0.76826 1.20724 1.22250 1.17957 0.93315 0.92627 0.89884 0.89465 0.87352 0.80814 0.79279 0.88141 0.85758 0.88049 0.91908 0.89851 0.94696 0.94657 0.80392 0.93395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.90 71.98 0.64 -1.35 16 2 C -0.09 -1.57 3.17 -9.91 -0.03 -1.60 16 3 H 0.10 1.55 7.86 -2.39 -0.02 1.53 16 4 C 0.11 1.63 5.74 86.53 0.50 2.13 16 5 N -0.60 -13.73 3.29 -813.44 -2.68 -16.41 16 6 C 0.60 14.88 7.88 86.80 0.68 15.56 16 7 O -0.56 -18.04 16.59 -3.87 -0.06 -18.10 16 8 C 0.02 0.28 6.82 42.59 0.29 0.57 16 9 C -0.03 -0.43 9.67 22.65 0.22 -0.22 16 10 C -0.19 -2.72 10.11 22.57 0.23 -2.50 16 11 C 0.47 8.65 7.47 85.01 0.63 9.28 16 12 O -0.56 -13.39 16.62 -5.24 -0.09 -13.47 16 13 N -0.33 -4.83 3.62 -494.06 -1.79 -6.62 16 14 C 0.07 0.48 10.58 127.77 1.35 1.83 16 15 N -0.16 -2.51 7.30 -48.19 -0.35 -2.86 16 16 C 0.11 3.03 6.44 86.61 0.56 3.59 16 17 C -0.10 -2.53 2.60 -9.70 -0.03 -2.55 16 18 H 0.08 2.11 7.86 -2.38 -0.02 2.09 16 19 C 0.17 5.67 5.59 86.38 0.48 6.15 16 20 N -0.76 -34.34 5.33 -343.43 -1.83 -36.17 16 21 C -0.23 -12.81 10.47 84.03 0.88 -11.93 16 22 H 0.06 3.77 8.06 -2.91 -0.02 3.74 16 23 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 24 N -0.98 -62.99 13.97 21.65 0.30 -62.68 16 25 Si 0.95 46.09 27.73 68.60 1.90 48.00 16 26 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 27 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 28 H -0.25 -11.30 6.52 99.48 0.65 -10.65 16 29 H 0.05 0.76 8.13 -2.39 -0.02 0.74 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.11 1.41 5.43 -2.39 -0.01 1.40 16 34 H 0.17 2.36 7.72 -2.91 -0.02 2.34 16 35 H 0.19 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.10 0.83 7.36 -2.39 -0.02 0.81 16 39 H 0.06 2.03 7.85 -2.39 -0.02 2.01 16 40 H 0.08 2.25 7.95 -2.38 -0.02 2.23 16 41 H 0.04 1.18 8.00 -2.38 -0.02 1.16 16 42 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.36 16.07 5.53 -92.71 -0.51 15.56 16 44 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -77.44 363.08 2.73 -74.70 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.45 Total: 17.82 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 6.88 Total: 15.80 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -6.35 Total: -124.75 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.15 Total: -31.57 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.90 Total: 48.00 kcal Total: -77.44 2.73 -74.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106956043.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.335 kcal (2) G-P(sol) polarization free energy of solvation -77.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds