Wall clock time and date at job start Fri Apr 10 2020 18:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46419 * 2 1 4 4 C 1.47195 * 109.47119 * 240.00415 * 2 1 3 5 5 N 2.60804 * 109.46950 * 240.00476 * 2 1 3 6 6 C 1.50699 * 109.47309 * 120.00036 * 2 1 3 7 7 O 1.21276 * 119.99587 * 119.99881 * 6 2 1 8 8 N 1.34771 * 120.00069 * 300.00562 * 6 2 1 9 9 C 1.46498 * 120.00067 * 180.27683 * 8 6 2 10 10 H 1.08996 * 110.54643 * 36.85845 * 9 8 6 11 11 C 1.54833 * 110.61579 * 159.89442 * 9 8 6 12 12 C 1.55868 * 103.50826 * 117.40066 * 11 9 8 13 13 H 1.09001 * 115.89174 * 159.82583 * 12 11 9 14 14 C 1.55841 * 105.72685 * 289.26657 * 12 11 9 15 15 C 1.54831 * 103.51935 * 71.48867 * 14 12 11 16 16 C 1.55848 * 110.61313 * 273.99523 * 9 8 6 17 17 H 1.09003 * 115.58299 * 82.59599 * 16 9 8 18 18 N 1.50644 * 101.02956 * 208.49887 * 16 9 8 19 19 C 1.46905 * 110.99832 * 297.65043 * 18 16 9 20 20 C 1.50697 * 109.46770 * 170.00020 * 19 18 16 21 21 O 1.21290 * 120.00808 * 359.97438 * 20 19 18 22 22 N 1.34782 * 119.99655 * 179.97438 * 20 19 18 23 23 C 1.37099 * 120.00204 * 179.97438 * 22 20 19 24 24 H 1.08000 * 119.99844 * 0.02562 * 23 22 20 25 25 C 1.38949 * 120.00432 * 180.02562 * 23 22 20 26 26 N 1.31416 * 119.99600 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00218 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47105 * 59.99776 * 27 25 23 29 29 H 1.48494 * 109.46920 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.47035 * 300.00139 * 27 25 23 31 31 H 1.08998 * 109.47161 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47196 * 299.99798 * 1 2 3 33 33 H 1.09002 * 109.47262 * 59.99994 * 1 2 3 34 34 H 0.97003 * 120.00264 * 359.97438 * 8 6 2 35 35 H 1.08995 * 110.61443 * 237.01688 * 11 9 8 36 36 H 1.09002 * 110.61592 * 0.02562 * 11 9 8 37 37 H 1.08997 * 110.61733 * 312.97565 * 14 12 11 38 38 H 1.09002 * 110.61693 * 189.99384 * 14 12 11 39 39 H 1.08999 * 110.61660 * 241.49245 * 15 14 12 40 40 H 1.09001 * 110.61497 * 118.50625 * 15 14 12 41 41 H 1.09003 * 109.46773 * 290.00162 * 19 18 16 42 42 H 1.08994 * 109.47144 * 50.00350 * 19 18 16 43 43 H 0.97003 * 120.00205 * 0.02562 * 22 20 19 44 44 H 0.96997 * 119.99886 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0207 -0.6938 -1.2019 5 7 2.3993 -1.2293 -2.1296 6 6 2.0324 -0.7104 1.2304 7 8 2.7296 -1.6964 1.1190 8 7 1.7068 -0.2500 2.4545 9 6 2.2001 -0.9371 3.6506 10 1 3.2139 -1.3040 3.4903 11 6 2.1449 0.0019 4.8805 12 6 1.1448 -0.7123 5.8393 13 1 1.2039 -0.4246 6.8890 14 6 -0.2577 -0.5589 5.1774 15 6 -0.1872 -1.5076 3.9558 16 6 1.2487 -2.1075 4.0428 17 1 1.4024 -3.0408 3.5011 18 7 1.4654 -2.1684 5.5323 19 6 2.8614 -2.4996 5.8480 20 6 3.1006 -2.3122 7.3241 21 8 2.1974 -1.9389 8.0424 22 7 4.3184 -2.5594 7.8461 23 6 4.5363 -2.3885 9.1888 24 1 3.7320 -2.0561 9.8283 25 6 5.7919 -2.6428 9.7269 26 7 6.7707 -3.0467 8.9486 27 14 6.0885 -2.4105 11.5565 28 1 5.1824 -3.3037 12.3221 29 1 7.4994 -2.7460 11.8756 30 1 5.8192 -0.9977 11.9261 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.1493 0.5388 2.5436 35 1 3.1318 0.1009 5.3324 36 1 1.7500 0.9785 4.6003 37 1 -0.4197 0.4698 4.8556 38 1 -1.0428 -0.8753 5.8641 39 1 -0.3142 -0.9491 3.0284 40 1 -0.9373 -2.2942 4.0370 41 1 3.0590 -3.5367 5.5767 42 1 3.5264 -1.8439 5.2861 43 1 5.0409 -2.8576 7.2716 44 1 7.6471 -3.2246 9.3242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109078834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:30 Heat of formation + Delta-G solvation = -9.957646 kcal Electronic energy + Delta-G solvation = -27375.508551 eV Core-core repulsion = 23521.879302 eV Total energy + Delta-G solvation = -3853.629249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.38080 -39.77766 -37.85413 -36.84257 -34.72937 -33.95286 -33.45617 -31.99646 -31.14511 -29.78815 -28.55266 -26.51986 -25.68107 -24.17340 -22.50747 -21.59537 -20.36047 -19.54952 -19.00487 -18.28764 -17.80687 -17.67621 -16.43747 -15.95712 -15.95007 -15.59158 -15.34157 -14.67186 -14.49324 -14.10463 -13.95605 -13.78471 -13.49118 -13.13665 -13.01987 -12.85772 -12.78577 -12.56438 -12.31202 -12.17807 -11.96895 -11.95752 -11.80961 -11.72777 -11.50070 -11.31629 -11.05087 -10.78991 -10.72680 -10.44838 -10.22551 -10.21216 -10.17667 -9.50834 -9.44143 -8.43364 -8.09692 -7.95966 -6.42125 -3.83259 2.14174 2.15061 2.47249 2.97144 3.19065 3.25309 3.29155 3.39546 3.87151 3.94066 4.18890 4.20785 4.31304 4.48529 4.51519 4.61282 4.76928 4.95904 4.98273 5.10261 5.13603 5.16633 5.22112 5.28716 5.35927 5.39709 5.47406 5.62821 5.66142 5.81755 5.89079 5.94317 5.96080 6.13233 6.18071 6.26418 6.31020 6.49396 6.83304 7.04288 7.19954 7.24024 7.54166 7.80787 8.04916 8.60477 9.16932 9.53565 10.04820 10.75442 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021996 B = 0.002856 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.644564 B = 9801.048294 C =10630.263936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.012 4.012 3 H 0.140 0.860 4 C 0.221 3.779 5 N -0.411 5.411 6 C 0.520 3.480 7 O -0.523 6.523 8 N -0.707 5.707 9 C 0.111 3.889 10 H 0.096 0.904 11 C -0.161 4.161 12 C 0.058 3.942 13 H 0.136 0.864 14 C -0.116 4.116 15 C -0.112 4.112 16 C 0.034 3.966 17 H 0.112 0.888 18 N -0.465 5.465 19 C 0.022 3.978 20 C 0.445 3.555 21 O -0.582 6.582 22 N -0.563 5.563 23 C -0.300 4.300 24 H 0.103 0.897 25 C 0.023 3.977 26 N -0.901 5.901 27 Si 0.930 3.070 28 H -0.273 1.273 29 H -0.285 1.285 30 H -0.274 1.274 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.402 0.598 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.056 0.944 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.069 10.541 -15.367 22.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.036 4.036 3 H 0.158 0.842 4 C -0.099 4.099 5 N -0.086 5.086 6 C 0.303 3.697 7 O -0.398 6.398 8 N -0.359 5.359 9 C 0.005 3.995 10 H 0.114 0.886 11 C -0.200 4.200 12 C -0.049 4.049 13 H 0.154 0.846 14 C -0.154 4.154 15 C -0.150 4.150 16 C -0.076 4.076 17 H 0.130 0.870 18 N -0.188 5.188 19 C -0.110 4.110 20 C 0.231 3.769 21 O -0.467 6.467 22 N -0.199 5.199 23 C -0.429 4.429 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.542 5.542 27 Si 0.757 3.243 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.238 0.762 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.225 0.775 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.704 8.742 -15.962 22.195 hybrid contribution 1.103 1.003 0.504 1.574 sum -11.601 9.746 -15.458 21.645 Atomic orbital electron populations 1.21821 0.89515 1.04530 1.04422 1.18852 0.98831 1.00200 0.85736 0.84225 1.28067 0.93866 0.93985 0.93972 1.81211 1.07562 1.07691 1.12157 1.19980 0.80683 0.84866 0.84167 1.90817 1.36952 1.25617 1.86403 1.45953 1.53088 1.31876 1.04954 1.22897 0.99535 0.93491 0.83564 0.88648 1.23545 1.02263 0.98768 0.95454 1.24890 0.93025 0.86928 1.00099 0.84611 1.22603 0.97415 0.98346 0.97027 1.22543 0.95837 0.98909 0.97728 1.24819 0.95414 0.97024 0.90365 0.86968 1.67837 1.20497 1.21799 1.08669 1.22158 0.90201 1.02114 0.96538 1.19659 0.83840 0.84831 0.88611 1.90473 1.43157 1.51695 1.61331 1.41870 1.09761 1.58909 1.09348 1.19636 0.96869 1.42669 0.83761 0.87963 1.25266 0.95235 0.97093 1.00313 1.69608 1.02704 1.45796 1.36098 0.85925 0.77193 0.78943 0.82205 1.19882 1.20994 1.19931 0.90805 0.89822 0.90212 0.76248 0.89899 0.90551 0.91755 0.90879 0.91438 0.91233 0.89162 0.92645 0.77468 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.38 9.04 37.16 0.34 -0.04 16 2 C -0.01 -0.06 3.10 -94.56 -0.29 -0.35 16 3 H 0.14 0.23 8.14 -51.93 -0.42 -0.19 16 4 C 0.22 2.15 13.88 -20.76 -0.29 1.87 16 5 N -0.41 -5.38 18.54 42.16 0.78 -4.59 16 6 C 0.52 4.59 7.13 -10.99 -0.08 4.51 16 7 O -0.52 -7.43 15.76 5.56 0.09 -7.34 16 8 N -0.71 -5.06 3.49 -51.41 -0.18 -5.24 16 9 C 0.11 1.20 2.26 -65.44 -0.15 1.05 16 10 H 0.10 1.25 6.75 -51.93 -0.35 0.90 16 11 C -0.16 -1.80 5.40 -24.23 -0.13 -1.93 16 12 C 0.06 0.81 4.20 -61.63 -0.26 0.55 16 13 H 0.14 2.37 6.40 -51.93 -0.33 2.03 16 14 C -0.12 -1.19 6.46 -24.25 -0.16 -1.35 16 15 C -0.11 -1.07 6.32 -24.24 -0.15 -1.22 16 16 C 0.03 0.41 4.79 -62.56 -0.30 0.11 16 17 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 18 N -0.47 -7.32 5.47 -205.68 -1.13 -8.44 16 19 C 0.02 0.38 5.24 -4.97 -0.03 0.36 16 20 C 0.45 10.17 7.55 -10.98 -0.08 10.09 16 21 O -0.58 -14.95 13.83 5.55 0.08 -14.88 16 22 N -0.56 -14.04 5.29 -10.96 -0.06 -14.09 16 23 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 24 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 25 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 26 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 27 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 29 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 30 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.04 7.56 -51.93 -0.39 -0.36 16 33 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 34 H 0.40 1.51 7.45 -40.82 -0.30 1.21 16 35 H 0.08 1.09 7.37 -51.93 -0.38 0.71 16 36 H 0.08 0.63 7.35 -51.93 -0.38 0.25 16 37 H 0.06 0.48 7.84 -51.93 -0.41 0.07 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.46 6.47 -51.93 -0.34 0.12 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 42 H 0.06 0.89 4.88 -51.93 -0.25 0.64 16 43 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 44 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -35.26 359.29 -7.06 -42.31 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.93 Total: 8.96 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -1.82 Total: 5.79 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.14 Total: -56.10 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: 0.16 Total: -22.22 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.26 -7.06 -42.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109078834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.353 kcal (2) G-P(sol) polarization free energy of solvation -35.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds