Wall clock time and date at job start Fri Apr 10 2020 18:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46419 * 2 1 4 4 C 1.47195 * 109.47119 * 240.00415 * 2 1 3 5 5 N 2.60804 * 109.46950 * 240.00476 * 2 1 3 6 6 C 1.50699 * 109.47309 * 120.00036 * 2 1 3 7 7 O 1.21276 * 119.99587 * 119.99881 * 6 2 1 8 8 N 1.34771 * 120.00069 * 300.00562 * 6 2 1 9 9 C 1.46498 * 120.00067 * 180.27683 * 8 6 2 10 10 H 1.08996 * 110.54643 * 36.85845 * 9 8 6 11 11 C 1.54833 * 110.61579 * 159.89442 * 9 8 6 12 12 C 1.55868 * 103.50826 * 117.40066 * 11 9 8 13 13 H 1.09001 * 115.89174 * 159.82583 * 12 11 9 14 14 C 1.55841 * 105.72685 * 289.26657 * 12 11 9 15 15 C 1.54831 * 103.51935 * 71.48867 * 14 12 11 16 16 C 1.55848 * 110.61313 * 273.99523 * 9 8 6 17 17 H 1.09003 * 115.58299 * 82.59599 * 16 9 8 18 18 N 1.50644 * 101.02956 * 208.49887 * 16 9 8 19 19 C 1.46905 * 110.99832 * 297.65043 * 18 16 9 20 20 C 1.50697 * 109.46770 * 170.00020 * 19 18 16 21 21 O 1.21290 * 120.00808 * 359.97438 * 20 19 18 22 22 N 1.34782 * 119.99655 * 179.97438 * 20 19 18 23 23 C 1.37099 * 120.00204 * 179.97438 * 22 20 19 24 24 H 1.08000 * 119.99844 * 0.02562 * 23 22 20 25 25 C 1.38949 * 120.00432 * 180.02562 * 23 22 20 26 26 N 1.31416 * 119.99600 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00218 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47105 * 59.99776 * 27 25 23 29 29 H 1.48494 * 109.46920 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.47035 * 300.00139 * 27 25 23 31 31 H 1.08998 * 109.47161 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47196 * 299.99798 * 1 2 3 33 33 H 1.09002 * 109.47262 * 59.99994 * 1 2 3 34 34 H 0.97003 * 120.00264 * 359.97438 * 8 6 2 35 35 H 1.08995 * 110.61443 * 237.01688 * 11 9 8 36 36 H 1.09002 * 110.61592 * 0.02562 * 11 9 8 37 37 H 1.08997 * 110.61733 * 312.97565 * 14 12 11 38 38 H 1.09002 * 110.61693 * 189.99384 * 14 12 11 39 39 H 1.08999 * 110.61660 * 241.49245 * 15 14 12 40 40 H 1.09001 * 110.61497 * 118.50625 * 15 14 12 41 41 H 1.09003 * 109.46773 * 290.00162 * 19 18 16 42 42 H 1.08994 * 109.47144 * 50.00350 * 19 18 16 43 43 H 0.97003 * 120.00205 * 0.02562 * 22 20 19 44 44 H 0.96997 * 119.99886 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0207 -0.6938 -1.2019 5 7 2.3993 -1.2293 -2.1296 6 6 2.0324 -0.7104 1.2304 7 8 2.7296 -1.6964 1.1190 8 7 1.7068 -0.2500 2.4545 9 6 2.2001 -0.9371 3.6506 10 1 3.2139 -1.3040 3.4903 11 6 2.1449 0.0019 4.8805 12 6 1.1448 -0.7123 5.8393 13 1 1.2039 -0.4246 6.8890 14 6 -0.2577 -0.5589 5.1774 15 6 -0.1872 -1.5076 3.9558 16 6 1.2487 -2.1075 4.0428 17 1 1.4024 -3.0408 3.5011 18 7 1.4654 -2.1684 5.5323 19 6 2.8614 -2.4996 5.8480 20 6 3.1006 -2.3122 7.3241 21 8 2.1974 -1.9389 8.0424 22 7 4.3184 -2.5594 7.8461 23 6 4.5363 -2.3885 9.1888 24 1 3.7320 -2.0561 9.8283 25 6 5.7919 -2.6428 9.7269 26 7 6.7707 -3.0467 8.9486 27 14 6.0885 -2.4105 11.5565 28 1 5.1824 -3.3037 12.3221 29 1 7.4994 -2.7460 11.8756 30 1 5.8192 -0.9977 11.9261 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.1493 0.5388 2.5436 35 1 3.1318 0.1009 5.3324 36 1 1.7500 0.9785 4.6003 37 1 -0.4197 0.4698 4.8556 38 1 -1.0428 -0.8753 5.8641 39 1 -0.3142 -0.9491 3.0284 40 1 -0.9373 -2.2942 4.0370 41 1 3.0590 -3.5367 5.5767 42 1 3.5264 -1.8439 5.2861 43 1 5.0409 -2.8576 7.2716 44 1 7.6471 -3.2246 9.3242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109078834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:30 Heat of formation + Delta-G solvation = -38.169580 kcal Electronic energy + Delta-G solvation = -27376.731913 eV Core-core repulsion = 23521.879302 eV Total energy + Delta-G solvation = -3854.852610 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.34507 -40.67885 -39.62925 -37.64619 -36.01156 -35.47212 -34.05518 -33.43260 -32.88012 -30.73915 -29.49286 -28.05299 -26.14832 -25.86303 -23.31236 -22.40333 -21.71033 -20.63377 -20.44493 -19.76800 -19.01148 -18.29948 -17.68907 -17.14740 -16.96928 -16.72699 -16.44918 -16.12741 -15.79882 -15.56903 -15.09099 -14.82486 -14.47497 -14.25325 -13.95778 -13.79729 -13.65421 -13.55482 -13.36891 -13.20904 -13.14986 -12.97355 -12.76826 -12.69028 -12.60083 -12.47224 -12.42322 -12.34275 -12.12603 -11.81225 -11.64552 -11.43835 -11.08192 -10.92831 -10.35488 -10.23116 -10.01105 -9.29245 -8.46350 -5.95437 1.39285 1.41161 1.42778 1.50135 1.52385 1.75226 2.03934 2.26962 2.30179 2.79264 2.84657 3.20184 3.26035 3.58119 3.65097 3.74046 3.87390 4.00213 4.17611 4.20420 4.24308 4.25609 4.33539 4.43600 4.49206 4.54253 4.60918 4.82389 4.85824 4.91054 4.94173 4.99928 5.07258 5.27155 5.33332 5.37644 5.39946 5.41588 5.50162 5.79599 5.87575 6.08289 6.41956 6.58521 6.59461 7.12152 7.20704 7.55430 8.10333 8.71048 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021996 B = 0.002856 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.644564 B = 9801.048294 C =10630.263936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.001 4.001 3 H 0.190 0.810 4 C 0.241 3.759 5 N -0.481 5.481 6 C 0.521 3.479 7 O -0.583 6.583 8 N -0.685 5.685 9 C 0.124 3.876 10 H 0.068 0.932 11 C -0.149 4.149 12 C 0.044 3.956 13 H 0.093 0.907 14 C -0.105 4.105 15 C -0.101 4.101 16 C 0.030 3.970 17 H 0.099 0.901 18 N -0.493 5.493 19 C 0.036 3.964 20 C 0.447 3.553 21 O -0.611 6.611 22 N -0.575 5.575 23 C -0.331 4.331 24 H 0.082 0.918 25 C -0.015 4.015 26 N -0.923 5.923 27 Si 0.994 3.006 28 H -0.272 1.272 29 H -0.272 1.272 30 H -0.268 1.268 31 H 0.057 0.943 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.425 0.575 35 H 0.056 0.944 36 H 0.118 0.882 37 H 0.107 0.893 38 H 0.059 0.941 39 H 0.106 0.894 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.070 0.930 43 H 0.393 0.607 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.830 13.144 -16.371 25.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 H 0.207 0.793 4 C -0.077 4.077 5 N -0.157 5.157 6 C 0.307 3.693 7 O -0.462 6.462 8 N -0.338 5.338 9 C 0.017 3.983 10 H 0.087 0.913 11 C -0.188 4.188 12 C -0.064 4.064 13 H 0.111 0.889 14 C -0.142 4.142 15 C -0.139 4.139 16 C -0.079 4.079 17 H 0.118 0.882 18 N -0.217 5.217 19 C -0.096 4.096 20 C 0.234 3.766 21 O -0.497 6.497 22 N -0.213 5.213 23 C -0.460 4.460 24 H 0.100 0.900 25 C -0.214 4.214 26 N -0.564 5.564 27 Si 0.817 3.183 28 H -0.198 1.198 29 H -0.197 1.197 30 H -0.193 1.193 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.115 0.885 34 H 0.266 0.734 35 H 0.075 0.925 36 H 0.136 0.864 37 H 0.125 0.875 38 H 0.078 0.922 39 H 0.125 0.875 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.088 0.912 43 H 0.227 0.773 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.504 11.388 -16.983 25.069 hybrid contribution 1.590 0.189 0.827 1.803 sum -12.913 11.577 -16.156 23.702 Atomic orbital electron populations 1.21950 0.86765 1.04398 1.07053 1.19200 1.00653 1.01124 0.81494 0.79345 1.28997 0.92097 0.92599 0.94049 1.81223 1.09926 1.09860 1.14724 1.20581 0.79458 0.84019 0.85267 1.90818 1.39702 1.28470 1.87229 1.45657 1.52755 1.32093 1.03340 1.22459 0.98009 0.93148 0.84714 0.91343 1.23409 1.00355 1.00540 0.94506 1.24802 0.96530 0.86146 0.98888 0.88857 1.22599 0.94151 1.00945 0.96546 1.22573 0.93366 0.98884 0.99087 1.24850 0.97891 0.97380 0.87804 0.88246 1.67849 1.18541 1.23729 1.11590 1.21964 0.92500 1.02669 0.92481 1.20562 0.82641 0.82708 0.90692 1.90450 1.43912 1.52440 1.62919 1.41962 1.10603 1.59858 1.08832 1.19633 0.97053 1.44441 0.84882 0.90028 1.26073 0.94532 0.96260 1.04580 1.69685 1.03034 1.45964 1.37756 0.84976 0.77462 0.78977 0.76869 1.19762 1.19710 1.19348 0.92362 0.86315 0.88520 0.73421 0.92510 0.86357 0.87464 0.92215 0.87535 0.91663 0.88951 0.91189 0.77331 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.00 9.04 71.98 0.65 0.65 16 2 C 0.00 0.00 3.10 -13.35 -0.04 -0.05 16 3 H 0.19 -0.56 8.14 -2.38 -0.02 -0.58 16 4 C 0.24 4.30 13.88 89.44 1.24 5.54 16 5 N -0.48 -12.54 18.54 20.01 0.37 -12.17 16 6 C 0.52 7.62 7.13 87.66 0.63 8.25 16 7 O -0.58 -16.15 15.76 -3.02 -0.05 -16.20 16 8 N -0.68 -6.95 3.49 -434.96 -1.52 -8.47 16 9 C 0.12 2.43 2.26 46.60 0.11 2.54 16 10 H 0.07 1.78 6.75 -2.39 -0.02 1.76 16 11 C -0.15 -3.04 5.40 32.21 0.17 -2.86 16 12 C 0.04 1.19 4.20 45.83 0.19 1.39 16 13 H 0.09 3.37 6.40 -2.39 -0.02 3.36 16 14 C -0.10 -1.81 6.46 32.20 0.21 -1.60 16 15 C -0.10 -1.58 6.32 32.21 0.20 -1.38 16 16 C 0.03 0.70 4.79 46.15 0.22 0.93 16 17 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 18 N -0.49 -15.65 5.47 -804.63 -4.41 -20.06 16 19 C 0.04 1.31 5.24 85.56 0.45 1.75 16 20 C 0.45 21.38 7.55 87.66 0.66 22.04 16 21 O -0.61 -32.95 13.83 -3.06 -0.04 -32.99 16 22 N -0.58 -30.03 5.29 -306.98 -1.62 -31.65 16 23 C -0.33 -18.82 9.68 84.04 0.81 -18.00 16 24 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 25 C -0.02 -0.81 5.50 84.93 0.47 -0.34 16 26 N -0.92 -50.76 13.05 21.66 0.28 -50.48 16 27 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 28 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 29 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 30 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 31 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.12 -0.78 7.56 -2.39 -0.02 -0.80 16 33 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.43 0.38 7.45 -92.71 -0.69 -0.31 16 35 H 0.06 1.47 7.37 -2.39 -0.02 1.46 16 36 H 0.12 1.38 7.35 -2.39 -0.02 1.36 16 37 H 0.11 0.97 7.84 -2.39 -0.02 0.95 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.11 0.82 6.47 -2.39 -0.02 0.80 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.07 2.34 4.88 -2.39 -0.01 2.32 16 43 H 0.39 19.92 7.90 -92.71 -0.73 19.19 16 44 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -84.79 359.29 0.66 -84.13 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: -0.36 Total: 23.92 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 5.97 Total: 18.85 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -6.89 Total: -122.83 kcal Atomic # 8 Polarization: -49.10 SS G_CDS: -0.09 Total: -49.19 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -84.79 0.66 -84.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109078834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.958 kcal (2) G-P(sol) polarization free energy of solvation -84.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds