Wall clock time and date at job start Fri Apr 10 2020 18:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47054 * 2 1 4 4 C 1.47194 * 109.47170 * 240.00050 * 2 1 3 5 5 N 2.60796 * 109.47108 * 239.99916 * 2 1 3 6 6 C 1.50702 * 109.47286 * 119.99817 * 2 1 3 7 7 O 1.21275 * 120.00030 * 120.00091 * 6 2 1 8 8 N 1.34778 * 119.99659 * 300.00154 * 6 2 1 9 9 C 1.46498 * 119.99590 * 180.02562 * 8 6 2 10 10 H 1.08995 * 110.55229 * 32.13012 * 9 8 6 11 11 C 1.54839 * 110.61525 * 269.09544 * 9 8 6 12 12 C 1.55844 * 103.52021 * 241.49688 * 11 9 8 13 13 H 1.09004 * 116.15039 * 159.22777 * 12 11 9 14 14 C 1.55844 * 105.02984 * 288.26629 * 12 11 9 15 15 C 1.54834 * 103.52072 * 71.73084 * 14 12 11 16 16 C 1.55849 * 103.51619 * 0.02562 * 15 14 12 17 17 H 1.09005 * 115.58010 * 158.88984 * 16 15 14 18 18 N 1.50646 * 101.02902 * 32.99133 * 16 15 14 19 19 C 1.46900 * 111.00113 * 62.35018 * 18 16 15 20 20 C 1.50698 * 109.47020 * 67.88677 * 19 18 16 21 21 O 1.21296 * 120.00508 * 5.81380 * 20 19 18 22 22 N 1.34778 * 120.00305 * 185.81036 * 20 19 18 23 23 C 1.37097 * 120.00372 * 180.02562 * 22 20 19 24 24 H 1.07992 * 119.99987 * 0.27751 * 23 22 20 25 25 C 1.38958 * 119.99948 * 179.97438 * 23 22 20 26 26 N 1.31410 * 120.00036 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99808 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47081 * 60.00060 * 27 25 23 29 29 H 1.48502 * 109.47077 * 180.02562 * 27 25 23 30 30 H 1.48499 * 109.46866 * 299.99910 * 27 25 23 31 31 H 1.08995 * 109.47090 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46888 * 300.00536 * 1 2 3 33 33 H 1.09002 * 109.46847 * 59.99775 * 1 2 3 34 34 H 0.96998 * 120.00599 * 359.97438 * 8 6 2 35 35 H 1.08997 * 110.61244 * 122.97939 * 11 9 8 36 36 H 1.09004 * 110.60648 * 0.02562 * 11 9 8 37 37 H 1.09009 * 110.61359 * 190.24003 * 14 12 11 38 38 H 1.08994 * 110.61669 * 313.22008 * 14 12 11 39 39 H 1.09005 * 110.61135 * 118.50402 * 15 14 12 40 40 H 1.08997 * 110.61481 * 241.33314 * 15 14 12 41 41 H 1.08996 * 109.47000 * 307.88989 * 19 18 16 42 42 H 1.08997 * 109.47558 * 187.88888 * 19 18 16 43 43 H 0.97004 * 119.99432 * 359.97438 * 22 20 19 44 44 H 0.97001 * 120.00327 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3993 -1.2294 -2.1294 6 6 2.0324 -0.7104 1.2305 7 8 2.7297 -1.6964 1.1192 8 7 1.7068 -0.2498 2.4546 9 6 2.1956 -0.9401 3.6507 10 1 3.1739 -1.3828 3.4640 11 6 1.1839 -2.0188 4.1094 12 6 0.7707 -1.5476 5.5362 13 1 -0.1728 -1.9389 5.9169 14 6 2.0197 -1.8169 6.4284 15 6 3.0315 -0.7382 5.9699 16 6 2.2582 0.0392 4.8624 17 1 2.6239 1.0438 4.6498 18 7 0.8461 -0.0508 5.3796 19 6 0.7175 0.6221 6.6790 20 6 0.8963 2.1071 6.4955 21 8 1.0045 2.5718 5.3803 22 7 0.9360 2.9191 7.5705 23 6 1.0981 4.2702 7.4035 24 1 1.1896 4.6844 6.4104 25 6 1.1385 5.1073 8.5119 26 7 1.0218 4.6039 9.7201 27 14 1.3587 6.9483 8.2843 28 1 0.2379 7.4840 7.4707 29 1 1.3693 7.6134 9.6120 30 1 2.6445 7.2108 7.5894 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.1494 0.5390 2.5436 35 1 1.6602 -2.9983 4.1516 36 1 0.3190 -2.0402 3.4464 37 1 1.7733 -1.6886 7.4825 38 1 2.4145 -2.8161 6.2445 39 1 3.2865 -0.0752 6.7966 40 1 3.9288 -1.2027 5.5612 41 1 1.4807 0.2457 7.3601 42 1 -0.2703 0.4237 7.0948 43 1 0.8491 2.5476 8.4623 44 1 1.0503 5.1882 10.4939 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110394980.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:34 Heat of formation + Delta-G solvation = -18.345442 kcal Electronic energy + Delta-G solvation = -27280.812090 eV Core-core repulsion = 23426.819119 eV Total energy + Delta-G solvation = -3853.992971 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.18244 -39.78764 -37.87993 -36.71545 -34.66769 -33.98562 -33.45423 -31.46271 -31.01869 -29.86870 -28.88300 -26.54369 -25.51275 -24.20754 -22.64043 -20.67039 -20.56973 -19.71171 -19.02934 -18.13158 -17.86773 -17.41637 -16.39602 -16.23902 -15.63486 -15.56277 -15.07785 -14.54103 -14.48007 -14.08290 -13.85282 -13.79047 -13.60076 -13.27462 -12.91067 -12.88064 -12.59882 -12.33939 -12.21933 -12.06686 -12.03446 -11.78125 -11.71302 -11.49969 -11.47675 -11.26322 -11.15069 -10.97774 -10.76191 -10.49238 -10.41649 -10.26499 -9.90529 -9.53441 -9.14862 -8.57466 -8.20472 -8.01494 -6.46878 -3.87944 2.34008 2.35022 2.62892 3.15560 3.19119 3.22261 3.25689 3.61027 3.85366 3.87574 4.15617 4.38004 4.52171 4.56711 4.62018 4.74390 4.82654 5.00552 5.10707 5.17881 5.21692 5.24593 5.26094 5.32963 5.37838 5.42444 5.54036 5.68488 5.72186 5.78611 5.86359 5.91889 5.98432 6.05076 6.15510 6.21172 6.29887 6.46841 6.76430 7.10397 7.29808 7.46765 7.49563 8.00259 8.04889 8.55609 9.12434 9.49061 9.99946 10.70688 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014864 B = 0.003203 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.303358 B = 8739.545862 C =10072.749893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.014 4.014 3 H 0.143 0.857 4 C 0.226 3.774 5 N -0.420 5.420 6 C 0.523 3.477 7 O -0.539 6.539 8 N -0.701 5.701 9 C 0.151 3.849 10 H 0.095 0.905 11 C -0.121 4.121 12 C 0.041 3.959 13 H 0.114 0.886 14 C -0.155 4.155 15 C -0.155 4.155 16 C 0.050 3.950 17 H 0.132 0.868 18 N -0.466 5.466 19 C 0.022 3.978 20 C 0.445 3.555 21 O -0.582 6.582 22 N -0.563 5.563 23 C -0.300 4.300 24 H 0.103 0.897 25 C 0.023 3.977 26 N -0.902 5.902 27 Si 0.930 3.070 28 H -0.273 1.273 29 H -0.285 1.285 30 H -0.274 1.274 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.415 0.585 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.391 0.609 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.518 -10.752 -7.727 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.039 4.039 3 H 0.160 0.840 4 C -0.093 4.093 5 N -0.095 5.095 6 C 0.306 3.694 7 O -0.416 6.416 8 N -0.352 5.352 9 C 0.046 3.954 10 H 0.113 0.887 11 C -0.160 4.160 12 C -0.068 4.068 13 H 0.132 0.868 14 C -0.194 4.194 15 C -0.195 4.195 16 C -0.059 4.059 17 H 0.150 0.850 18 N -0.188 5.188 19 C -0.109 4.109 20 C 0.230 3.770 21 O -0.467 6.467 22 N -0.200 5.200 23 C -0.429 4.429 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.757 3.243 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.252 0.748 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.107 0.893 43 H 0.225 0.775 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.842 -11.554 -10.121 15.383 hybrid contribution 0.268 1.005 1.789 2.069 sum -0.574 -10.549 -8.332 13.455 Atomic orbital electron populations 1.21814 0.89417 1.04200 1.04811 1.18882 0.98981 1.00394 0.85613 0.83998 1.28141 0.93554 0.93703 0.93903 1.81172 1.07960 1.08132 1.12212 1.19954 0.80483 0.84618 0.84351 1.90760 1.37955 1.26207 1.86669 1.45882 1.52801 1.32187 1.04338 1.22138 0.97631 0.92449 0.83214 0.88710 1.23026 0.99262 0.97823 0.95849 1.24539 0.97482 0.89713 0.95069 0.86765 1.23315 0.96381 0.99324 1.00386 1.23257 0.98827 0.97768 0.99628 1.24773 0.89039 0.99165 0.92919 0.85026 1.67484 1.23411 1.05454 1.22450 1.22141 1.02287 0.94809 0.91705 1.19690 0.84515 0.87147 0.85626 1.90475 1.55430 1.76553 1.24235 1.41875 1.63419 1.07209 1.07474 1.19627 1.46854 0.81588 0.94866 0.87958 1.25258 0.97312 1.00656 0.94644 1.69597 1.50126 1.36638 0.97904 0.85935 0.79106 0.81997 0.77291 1.19874 1.21005 1.19917 0.91165 0.89285 0.90346 0.74850 0.90804 0.90555 0.91245 0.91061 0.90660 0.90925 0.92311 0.89342 0.77547 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.04 37.16 0.34 -0.50 16 2 C -0.01 -0.11 3.10 -94.56 -0.29 -0.41 16 3 H 0.14 0.72 8.14 -51.92 -0.42 0.30 16 4 C 0.23 2.60 13.88 -20.76 -0.29 2.31 16 5 N -0.42 -6.00 18.54 42.15 0.78 -5.22 16 6 C 0.52 5.76 7.14 -10.98 -0.08 5.68 16 7 O -0.54 -8.15 15.67 5.56 0.09 -8.07 16 8 N -0.70 -7.34 4.96 -51.37 -0.26 -7.60 16 9 C 0.15 1.73 2.80 -65.41 -0.18 1.55 16 10 H 0.09 1.16 7.23 -51.93 -0.38 0.79 16 11 C -0.12 -1.25 6.22 -24.24 -0.15 -1.40 16 12 C 0.04 0.44 4.96 -62.55 -0.31 0.13 16 13 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 14 C -0.16 -1.58 5.63 -24.25 -0.14 -1.72 16 15 C -0.16 -1.82 5.62 -24.24 -0.14 -1.96 16 16 C 0.05 0.66 3.83 -62.53 -0.24 0.42 16 17 H 0.13 2.11 6.98 -51.93 -0.36 1.75 16 18 N -0.47 -6.40 5.30 -206.95 -1.10 -7.50 16 19 C 0.02 0.35 5.15 -4.98 -0.03 0.33 16 20 C 0.44 9.44 7.47 -10.99 -0.08 9.36 16 21 O -0.58 -13.84 14.56 5.54 0.08 -13.76 16 22 N -0.56 -13.30 5.29 -10.96 -0.06 -13.36 16 23 C -0.30 -7.89 9.68 -14.93 -0.14 -8.03 16 24 H 0.10 2.81 7.16 -52.49 -0.38 2.43 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 26 N -0.90 -23.63 13.05 55.50 0.72 -22.91 16 27 Si 0.93 20.20 29.55 -169.99 -5.02 15.18 16 28 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 29 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 30 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.45 7.57 -51.93 -0.39 0.05 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.41 4.11 8.08 -40.82 -0.33 3.78 16 35 H 0.07 0.72 7.82 -51.93 -0.41 0.31 16 36 H 0.08 0.80 7.98 -51.93 -0.41 0.38 16 37 H 0.07 0.70 7.32 -51.92 -0.38 0.32 16 38 H 0.07 0.64 7.82 -51.93 -0.41 0.23 16 39 H 0.07 0.98 7.23 -51.93 -0.38 0.61 16 40 H 0.07 0.77 7.83 -51.93 -0.41 0.36 16 41 H 0.06 0.86 4.86 -51.93 -0.25 0.60 16 42 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.39 8.95 7.90 -40.82 -0.32 8.63 16 44 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -32.50 363.05 -7.16 -39.66 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -6.05 Total: 11.83 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -1.83 Total: 6.26 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.10 Total: -56.58 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.17 Total: -21.82 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.50 -7.16 -39.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110394980.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.317 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds