Wall clock time and date at job start Fri Apr 10 2020 18:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47054 * 2 1 4 4 C 1.47194 * 109.47170 * 240.00050 * 2 1 3 5 5 N 2.60796 * 109.47108 * 239.99916 * 2 1 3 6 6 C 1.50702 * 109.47286 * 119.99817 * 2 1 3 7 7 O 1.21275 * 120.00030 * 120.00091 * 6 2 1 8 8 N 1.34778 * 119.99659 * 300.00154 * 6 2 1 9 9 C 1.46498 * 119.99590 * 180.02562 * 8 6 2 10 10 H 1.08995 * 110.55229 * 32.13012 * 9 8 6 11 11 C 1.54839 * 110.61525 * 269.09544 * 9 8 6 12 12 C 1.55844 * 103.52021 * 241.49688 * 11 9 8 13 13 H 1.09004 * 116.15039 * 159.22777 * 12 11 9 14 14 C 1.55844 * 105.02984 * 288.26629 * 12 11 9 15 15 C 1.54834 * 103.52072 * 71.73084 * 14 12 11 16 16 C 1.55849 * 103.51619 * 0.02562 * 15 14 12 17 17 H 1.09005 * 115.58010 * 158.88984 * 16 15 14 18 18 N 1.50646 * 101.02902 * 32.99133 * 16 15 14 19 19 C 1.46900 * 111.00113 * 62.35018 * 18 16 15 20 20 C 1.50698 * 109.47020 * 67.88677 * 19 18 16 21 21 O 1.21296 * 120.00508 * 5.81380 * 20 19 18 22 22 N 1.34778 * 120.00305 * 185.81036 * 20 19 18 23 23 C 1.37097 * 120.00372 * 180.02562 * 22 20 19 24 24 H 1.07992 * 119.99987 * 0.27751 * 23 22 20 25 25 C 1.38958 * 119.99948 * 179.97438 * 23 22 20 26 26 N 1.31410 * 120.00036 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99808 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47081 * 60.00060 * 27 25 23 29 29 H 1.48502 * 109.47077 * 180.02562 * 27 25 23 30 30 H 1.48499 * 109.46866 * 299.99910 * 27 25 23 31 31 H 1.08995 * 109.47090 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46888 * 300.00536 * 1 2 3 33 33 H 1.09002 * 109.46847 * 59.99775 * 1 2 3 34 34 H 0.96998 * 120.00599 * 359.97438 * 8 6 2 35 35 H 1.08997 * 110.61244 * 122.97939 * 11 9 8 36 36 H 1.09004 * 110.60648 * 0.02562 * 11 9 8 37 37 H 1.09009 * 110.61359 * 190.24003 * 14 12 11 38 38 H 1.08994 * 110.61669 * 313.22008 * 14 12 11 39 39 H 1.09005 * 110.61135 * 118.50402 * 15 14 12 40 40 H 1.08997 * 110.61481 * 241.33314 * 15 14 12 41 41 H 1.08996 * 109.47000 * 307.88989 * 19 18 16 42 42 H 1.08997 * 109.47558 * 187.88888 * 19 18 16 43 43 H 0.97004 * 119.99432 * 359.97438 * 22 20 19 44 44 H 0.97001 * 120.00327 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3993 -1.2294 -2.1294 6 6 2.0324 -0.7104 1.2305 7 8 2.7297 -1.6964 1.1192 8 7 1.7068 -0.2498 2.4546 9 6 2.1956 -0.9401 3.6507 10 1 3.1739 -1.3828 3.4640 11 6 1.1839 -2.0188 4.1094 12 6 0.7707 -1.5476 5.5362 13 1 -0.1728 -1.9389 5.9169 14 6 2.0197 -1.8169 6.4284 15 6 3.0315 -0.7382 5.9699 16 6 2.2582 0.0392 4.8624 17 1 2.6239 1.0438 4.6498 18 7 0.8461 -0.0508 5.3796 19 6 0.7175 0.6221 6.6790 20 6 0.8963 2.1071 6.4955 21 8 1.0045 2.5718 5.3803 22 7 0.9360 2.9191 7.5705 23 6 1.0981 4.2702 7.4035 24 1 1.1896 4.6844 6.4104 25 6 1.1385 5.1073 8.5119 26 7 1.0218 4.6039 9.7201 27 14 1.3587 6.9483 8.2843 28 1 0.2379 7.4840 7.4707 29 1 1.3693 7.6134 9.6120 30 1 2.6445 7.2108 7.5894 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.1494 0.5390 2.5436 35 1 1.6602 -2.9983 4.1516 36 1 0.3190 -2.0402 3.4464 37 1 1.7733 -1.6886 7.4825 38 1 2.4145 -2.8161 6.2445 39 1 3.2865 -0.0752 6.7966 40 1 3.9288 -1.2027 5.5612 41 1 1.4807 0.2457 7.3601 42 1 -0.2703 0.4237 7.0948 43 1 0.8491 2.5476 8.4623 44 1 1.0503 5.1882 10.4939 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110394980.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:33 Heat of formation + Delta-G solvation = -43.063907 kcal Electronic energy + Delta-G solvation = -27281.883963 eV Core-core repulsion = 23426.819119 eV Total energy + Delta-G solvation = -3855.064844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.18080 -40.76118 -39.56298 -37.68121 -35.90350 -35.58635 -34.25101 -33.21085 -32.29479 -30.78036 -29.80466 -28.01140 -26.20977 -25.80594 -23.51511 -21.82151 -21.56805 -20.64937 -20.54943 -19.72076 -19.02452 -18.23135 -17.67040 -17.30032 -16.89476 -16.57506 -16.36022 -16.07795 -15.66260 -15.34967 -15.08006 -14.91789 -14.77238 -14.25344 -14.09355 -13.72255 -13.61933 -13.50494 -13.31506 -13.20138 -13.09582 -12.93153 -12.77711 -12.64794 -12.49046 -12.39191 -12.36769 -12.17837 -12.09743 -12.04824 -11.70422 -11.40147 -11.31923 -10.81852 -10.21534 -10.05506 -9.92949 -9.41336 -8.40902 -5.88352 1.43185 1.44178 1.45270 1.49630 1.55094 1.71828 2.14951 2.31432 2.33442 2.79039 2.85584 3.27263 3.36119 3.45750 3.72609 3.79737 3.96245 3.96972 4.13665 4.19598 4.29461 4.34724 4.35618 4.42970 4.48768 4.56315 4.65708 4.77727 4.84432 4.85651 4.88204 5.03236 5.09456 5.15320 5.25551 5.29648 5.33763 5.46662 5.52504 5.75278 5.92105 6.13916 6.41014 6.58917 6.67234 7.17361 7.19803 7.65315 8.19982 8.76443 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014864 B = 0.003203 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.303358 B = 8739.545862 C =10072.749893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.007 4.007 3 H 0.178 0.822 4 C 0.246 3.754 5 N -0.474 5.474 6 C 0.525 3.475 7 O -0.582 6.582 8 N -0.694 5.694 9 C 0.154 3.846 10 H 0.087 0.913 11 C -0.114 4.114 12 C 0.048 3.952 13 H 0.135 0.865 14 C -0.149 4.149 15 C -0.155 4.155 16 C 0.046 3.954 17 H 0.098 0.902 18 N -0.478 5.478 19 C 0.036 3.964 20 C 0.447 3.553 21 O -0.608 6.608 22 N -0.579 5.579 23 C -0.326 4.326 24 H 0.082 0.918 25 C -0.015 4.015 26 N -0.924 5.924 27 Si 0.988 3.012 28 H -0.271 1.271 29 H -0.276 1.276 30 H -0.272 1.272 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.419 0.581 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.393 0.607 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.438 -11.254 -7.456 13.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.031 4.031 3 H 0.195 0.805 4 C -0.072 4.072 5 N -0.150 5.150 6 C 0.310 3.690 7 O -0.463 6.463 8 N -0.344 5.344 9 C 0.049 3.951 10 H 0.105 0.895 11 C -0.152 4.152 12 C -0.060 4.060 13 H 0.153 0.847 14 C -0.187 4.187 15 C -0.194 4.194 16 C -0.063 4.063 17 H 0.116 0.884 18 N -0.201 5.201 19 C -0.096 4.096 20 C 0.234 3.766 21 O -0.494 6.494 22 N -0.216 5.216 23 C -0.455 4.455 24 H 0.100 0.900 25 C -0.214 4.214 26 N -0.565 5.565 27 Si 0.813 3.187 28 H -0.196 1.196 29 H -0.201 1.201 30 H -0.198 1.198 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.114 0.886 34 H 0.257 0.743 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.124 0.876 43 H 0.227 0.773 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.780 -12.062 -9.843 15.670 hybrid contribution 0.569 1.127 1.666 2.090 sum -1.212 -10.935 -8.176 13.707 Atomic orbital electron populations 1.21859 0.87303 1.04307 1.06327 1.19118 1.00418 1.01052 0.82505 0.80537 1.28754 0.92120 0.92540 0.93824 1.81182 1.09823 1.09859 1.14155 1.20359 0.79550 0.84004 0.85051 1.90749 1.40009 1.28255 1.87242 1.45842 1.52385 1.32090 1.04129 1.22046 0.97934 0.92302 0.82828 0.89474 1.22997 0.98897 0.97763 0.95581 1.24672 0.98664 0.87223 0.95443 0.84746 1.23297 0.95471 0.99568 1.00406 1.23238 0.99743 0.97912 0.98529 1.24587 0.89204 0.98086 0.94440 0.88424 1.67481 1.23706 1.07636 1.21266 1.21996 1.03673 0.90678 0.93266 1.20687 0.82006 0.89328 0.84570 1.90451 1.55826 1.77839 1.25277 1.41960 1.64727 1.06747 1.08182 1.19610 1.48344 0.83276 0.94319 0.89971 1.25978 0.96795 1.04397 0.94252 1.69667 1.50662 1.37884 0.98327 0.85048 0.78919 0.77289 0.77481 1.19606 1.20075 1.19765 0.91807 0.88011 0.88569 0.74345 0.89572 0.90321 0.90805 0.89126 0.92422 0.89881 0.90890 0.87592 0.77321 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.04 71.98 0.65 -0.64 16 2 C -0.01 -0.10 3.10 -13.35 -0.04 -0.14 16 3 H 0.18 1.31 8.14 -2.38 -0.02 1.29 16 4 C 0.25 5.46 13.88 89.44 1.24 6.70 16 5 N -0.47 -13.59 18.54 20.00 0.37 -13.22 16 6 C 0.53 10.98 7.14 87.66 0.63 11.61 16 7 O -0.58 -17.36 15.67 -3.02 -0.05 -17.41 16 8 N -0.69 -13.69 4.96 -434.83 -2.16 -15.85 16 9 C 0.15 3.35 2.80 46.63 0.13 3.48 16 10 H 0.09 2.06 7.23 -2.39 -0.02 2.05 16 11 C -0.11 -2.06 6.22 32.21 0.20 -1.86 16 12 C 0.05 0.88 4.96 46.14 0.23 1.11 16 13 H 0.13 2.00 8.14 -2.38 -0.02 1.98 16 14 C -0.15 -2.60 5.63 32.20 0.18 -2.42 16 15 C -0.15 -3.45 5.62 32.21 0.18 -3.27 16 16 C 0.05 1.19 3.83 46.17 0.18 1.37 16 17 H 0.10 3.22 6.98 -2.38 -0.02 3.21 16 18 N -0.48 -12.33 5.30 -808.66 -4.28 -16.61 16 19 C 0.04 1.07 5.15 85.56 0.44 1.51 16 20 C 0.45 19.01 7.47 87.66 0.66 19.67 16 21 O -0.61 -29.27 14.56 -3.08 -0.04 -29.32 16 22 N -0.58 -27.67 5.29 -306.98 -1.62 -29.29 16 23 C -0.33 -17.45 9.68 84.04 0.81 -16.63 16 24 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 25 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 26 N -0.92 -48.45 13.05 21.67 0.28 -48.17 16 27 Si 0.99 41.33 29.55 68.60 2.03 43.36 16 28 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 29 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 30 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 0.73 7.57 -2.39 -0.02 0.71 16 33 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.42 7.72 8.08 -92.71 -0.75 6.97 16 35 H 0.09 1.41 7.82 -2.39 -0.02 1.39 16 36 H 0.08 1.42 7.98 -2.38 -0.02 1.41 16 37 H 0.07 1.27 7.32 -2.38 -0.02 1.25 16 38 H 0.09 1.29 7.82 -2.39 -0.02 1.27 16 39 H 0.06 1.48 7.23 -2.38 -0.02 1.46 16 40 H 0.08 1.65 7.83 -2.39 -0.02 1.64 16 41 H 0.07 2.01 4.86 -2.39 -0.01 2.00 16 42 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 43 H 0.39 18.17 7.90 -92.71 -0.73 17.44 16 44 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -72.02 363.05 0.05 -71.97 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -0.42 Total: 34.35 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: 5.95 Total: 20.18 kcal Atomic # 7 Polarization: -115.72 SS G_CDS: -7.41 Total: -123.13 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -0.09 Total: -46.73 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -72.02 0.05 -71.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110394980.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.901 kcal (2) G-P(sol) polarization free energy of solvation -72.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds