Wall clock time and date at job start Fri Apr 10 2020 18:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46965 * 2 1 4 4 C 1.53001 * 109.46966 * 240.00016 * 2 1 3 5 5 C 1.53001 * 109.47047 * 175.00031 * 4 2 1 6 6 H 1.09000 * 109.46706 * 305.00063 * 5 4 2 7 7 C 1.52994 * 109.47012 * 185.00041 * 5 4 2 8 8 N 1.46495 * 109.46935 * 64.99944 * 5 4 2 9 9 C 1.36943 * 119.99753 * 204.99837 * 8 5 4 10 10 H 1.07996 * 119.99859 * 0.02562 * 9 8 5 11 11 C 1.38811 * 119.99783 * 180.02562 * 9 8 5 12 12 N 1.31618 * 120.00212 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00007 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47187 * 89.99505 * 13 11 9 15 15 H 1.48498 * 109.47343 * 209.99616 * 13 11 9 16 16 H 1.48499 * 109.47028 * 330.00082 * 13 11 9 17 17 N 1.46496 * 109.47233 * 120.00207 * 2 1 3 18 18 C 1.34775 * 120.00003 * 275.00018 * 17 2 1 19 19 O 1.21511 * 119.99928 * 0.02562 * 18 17 2 20 20 C 1.48227 * 120.00254 * 179.97438 * 18 17 2 21 21 C 1.39626 * 119.65542 * 180.23182 * 20 18 17 22 22 C 1.38541 * 119.24823 * 180.29714 * 21 20 18 23 23 C 1.38589 * 118.54913 * 359.47905 * 22 21 20 24 24 C 1.39590 * 119.24721 * 0.25273 * 23 22 21 25 25 C 1.48226 * 119.64900 * 179.97438 * 24 23 22 26 26 N 1.34777 * 119.99387 * 180.02562 * 25 24 23 27 27 O 1.21500 * 120.00337 * 0.02562 * 25 24 23 28 28 N 1.32337 * 119.65154 * 359.97438 * 20 18 17 29 29 H 1.08999 * 109.47351 * 300.00087 * 1 2 3 30 30 H 1.08999 * 109.47076 * 60.00192 * 1 2 3 31 31 H 1.09003 * 109.46965 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47240 * 295.00145 * 4 2 1 33 33 H 1.08997 * 109.46937 * 54.99966 * 4 2 1 34 34 H 1.09004 * 109.47098 * 179.97438 * 7 5 4 35 35 H 1.09000 * 109.47403 * 299.99595 * 7 5 4 36 36 H 1.09005 * 109.47436 * 60.00036 * 7 5 4 37 37 H 0.96996 * 120.00268 * 24.99780 * 8 5 4 38 38 H 0.97000 * 120.00265 * 180.02562 * 12 11 9 39 39 H 0.96999 * 120.00357 * 94.99717 * 17 2 1 40 40 H 1.08010 * 120.37857 * 0.04838 * 21 20 18 41 41 H 1.08002 * 120.72910 * 179.75974 * 22 21 20 42 42 H 1.08007 * 120.37338 * 180.23181 * 23 22 21 43 43 H 0.97005 * 120.00529 * 0.02562 * 26 25 24 44 44 H 0.96999 * 119.99702 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6240 8 7 4.1536 -1.3342 -0.1825 9 6 5.3944 -0.9856 0.2806 10 1 5.9385 -0.1790 -0.1880 11 6 5.9525 -1.6690 1.3521 12 7 5.2890 -2.6517 1.9235 13 14 7.6446 -1.1931 1.9842 14 1 7.5057 -0.1563 3.0383 15 1 8.3155 -2.3898 2.5524 16 1 8.4578 -0.6545 0.8645 17 7 2.0184 -0.6906 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8577 1.1605 2.4118 20 6 2.6407 -0.7172 3.5675 21 6 2.7666 -0.0149 4.7677 22 6 3.2347 -0.6748 5.8923 23 6 3.5525 -2.0197 5.7867 24 6 3.3975 -2.6627 4.5575 25 6 3.7353 -4.1007 4.4344 26 7 3.5887 -4.7283 3.2507 27 8 4.1442 -4.7135 5.4005 28 7 2.9525 -2.0016 3.5005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7516 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 5.1508 -1.1477 -2.6702 35 1 3.7723 -2.2741 -2.6700 36 1 3.6263 -0.6886 -3.4658 37 1 3.6647 -2.0584 0.2386 38 1 5.6789 -3.1291 2.6725 39 1 2.2491 -1.6318 1.1526 40 1 2.5060 1.0321 4.8178 41 1 3.3451 -0.1539 6.8319 42 1 3.9163 -2.5639 6.6458 43 1 3.2626 -4.2389 2.4792 44 1 3.8101 -5.6692 3.1700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146656231.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:06 Heat of formation + Delta-G solvation = -24.851052 kcal Electronic energy + Delta-G solvation = -28755.265127 eV Core-core repulsion = 24900.990052 eV Total energy + Delta-G solvation = -3854.275075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.34297 -39.10375 -38.01168 -36.72786 -34.20295 -33.32652 -32.42674 -31.91291 -31.17026 -30.18567 -28.49150 -26.36076 -24.50233 -24.28061 -23.62377 -21.53313 -20.36406 -20.24974 -19.63453 -17.82986 -17.21950 -16.97691 -16.35239 -15.78806 -15.67801 -14.97049 -14.84046 -14.64349 -14.22256 -14.05750 -13.80863 -13.70214 -13.37670 -13.07500 -12.92646 -12.72423 -12.53534 -12.14201 -11.96086 -11.77389 -11.71920 -11.67817 -11.02503 -10.85675 -10.73231 -10.40793 -10.27213 -10.21258 -9.90629 -9.68222 -9.61212 -9.51229 -9.03653 -9.02839 -8.93943 -8.80123 -8.36064 -6.90455 -5.76786 -3.00215 0.91355 1.40417 2.96436 3.41472 3.47970 3.50642 3.55920 3.69017 3.96501 4.45876 4.57634 4.59662 5.03162 5.12618 5.25201 5.29169 5.35508 5.40487 5.50648 5.57720 5.67019 5.79805 5.85947 5.87531 5.96008 5.99314 6.12569 6.21281 6.23416 6.32607 6.35199 6.41073 6.53389 6.59992 6.81482 6.84841 7.03742 7.13112 7.29294 7.72860 7.85181 8.07170 8.30705 8.40841 8.79818 8.83233 9.53977 10.06943 10.43418 11.43046 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010044 B = 0.006772 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.171533 B = 4133.675762 C = 5287.658020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.084 0.916 4 C -0.133 4.133 5 C 0.169 3.831 6 H 0.046 0.954 7 C -0.162 4.162 8 N -0.713 5.713 9 C -0.231 4.231 10 H 0.063 0.937 11 C -0.002 4.002 12 N -0.909 5.909 13 Si 0.890 3.110 14 H -0.295 1.295 15 H -0.294 1.294 16 H -0.286 1.286 17 N -0.674 5.674 18 C 0.584 3.416 19 O -0.558 6.558 20 C 0.088 3.912 21 C -0.102 4.102 22 C -0.099 4.099 23 C -0.106 4.106 24 C 0.090 3.910 25 C 0.589 3.411 26 N -0.810 5.810 27 O -0.566 6.566 28 N -0.372 5.372 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.034 0.966 37 H 0.379 0.621 38 H 0.249 0.751 39 H 0.413 0.587 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.422 0.578 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.817 0.505 -0.013 9.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.102 0.898 4 C -0.172 4.172 5 C 0.059 3.941 6 H 0.064 0.936 7 C -0.223 4.223 8 N -0.357 5.357 9 C -0.362 4.362 10 H 0.081 0.919 11 C -0.199 4.199 12 N -0.557 5.557 13 Si 0.723 3.277 14 H -0.223 1.223 15 H -0.221 1.221 16 H -0.212 1.212 17 N -0.326 5.326 18 C 0.369 3.631 19 O -0.437 6.437 20 C -0.054 4.054 21 C -0.123 4.123 22 C -0.125 4.125 23 C -0.127 4.127 24 C -0.052 4.052 25 C 0.373 3.627 26 N -0.371 5.371 27 O -0.445 6.445 28 N -0.086 5.086 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.214 0.786 38 H 0.060 0.940 39 H 0.253 0.747 40 H 0.162 0.838 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.254 0.746 44 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -9.718 0.704 -0.114 9.744 hybrid contribution 1.476 -0.036 0.803 1.681 sum -8.242 0.668 0.689 8.297 Atomic orbital electron populations 1.22208 0.96150 1.01718 1.01991 1.20873 0.92576 0.97791 0.84516 0.89812 1.22208 0.97903 1.00599 0.96453 1.20274 0.89610 0.95902 0.88338 0.93562 1.22415 1.01490 1.00283 0.98079 1.42404 1.18654 1.40018 1.34603 1.19060 0.93222 1.13143 1.10798 0.91935 1.24477 0.97661 0.98865 0.98888 1.69525 1.36960 1.23927 1.25273 0.86452 0.85448 0.77148 0.78668 1.22300 1.22086 1.21207 1.45792 1.63930 1.14901 1.07962 1.17653 0.76982 0.85632 0.82840 1.90700 1.52376 1.15344 1.85270 1.21075 0.99775 0.90550 0.93960 1.22225 0.96164 1.01547 0.92374 1.21458 0.97963 0.94078 0.98970 1.22227 0.96828 0.94987 0.98698 1.20933 0.99907 0.94769 0.89569 1.17678 0.76659 0.85158 0.83222 1.43493 1.67037 1.13954 1.12566 1.90751 1.48219 1.66701 1.38824 1.67431 1.04729 1.07982 1.28448 0.92397 0.92048 0.92734 0.91707 0.90806 0.92942 0.93649 0.94717 0.78583 0.94025 0.74713 0.83803 0.84212 0.83862 0.74566 0.77476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.48 37.16 0.35 -1.69 16 2 C 0.15 2.23 2.57 -67.93 -0.17 2.06 16 3 H 0.08 1.44 7.58 -51.93 -0.39 1.05 16 4 C -0.13 -1.86 4.43 -26.73 -0.12 -1.98 16 5 C 0.17 2.96 2.89 -67.94 -0.20 2.77 16 6 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 7 C -0.16 -2.65 9.49 37.15 0.35 -2.30 16 8 N -0.71 -14.99 3.84 -53.43 -0.21 -15.20 16 9 C -0.23 -5.73 9.93 -15.06 -0.15 -5.88 16 10 H 0.06 1.62 7.83 -52.49 -0.41 1.21 16 11 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 12 N -0.91 -21.98 11.16 55.49 0.62 -21.36 16 13 Si 0.89 21.87 29.55 -169.99 -5.02 16.84 16 14 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 15 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 N -0.67 -11.58 3.79 -54.63 -0.21 -11.79 16 18 C 0.58 11.24 7.78 -12.16 -0.09 11.15 16 19 O -0.56 -11.68 15.98 5.36 0.09 -11.59 16 20 C 0.09 1.64 6.75 -83.03 -0.56 1.08 16 21 C -0.10 -1.67 9.63 -38.95 -0.38 -2.04 16 22 C -0.10 -1.42 10.16 -39.34 -0.40 -1.82 16 23 C -0.11 -1.71 9.63 -38.95 -0.38 -2.09 16 24 C 0.09 1.63 6.71 -83.03 -0.56 1.07 16 25 C 0.59 10.89 7.64 -12.16 -0.09 10.79 16 26 N -0.81 -12.89 8.25 30.62 0.25 -12.64 16 27 O -0.57 -11.60 17.16 5.37 0.09 -11.51 16 28 N -0.37 -6.85 7.70 -6.38 -0.05 -6.89 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.38 8.03 5.70 -40.82 -0.23 7.80 16 38 H 0.25 6.31 7.67 -40.82 -0.31 6.00 16 39 H 0.41 7.23 5.84 -40.82 -0.24 6.99 16 40 H 0.14 2.17 7.64 -52.48 -0.40 1.77 16 41 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 42 H 0.14 2.12 7.64 -52.48 -0.40 1.72 16 43 H 0.42 6.85 7.73 -40.82 -0.32 6.53 16 44 H 0.40 5.49 8.93 -40.82 -0.36 5.12 16 LS Contribution 369.19 15.07 5.56 5.56 Total: -1.00 -28.64 369.19 -7.45 -36.09 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: -6.09 Total: 21.52 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: -2.49 Total: 10.96 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: 0.41 Total: -67.88 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: 0.18 Total: -23.10 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.64 -7.45 -36.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146656231.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.236 kcal (2) G-P(sol) polarization free energy of solvation -28.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds