Wall clock time and date at job start Fri Apr 10 2020 18:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46965 * 2 1 4 4 C 1.53001 * 109.46966 * 240.00016 * 2 1 3 5 5 C 1.53001 * 109.47047 * 175.00031 * 4 2 1 6 6 H 1.09000 * 109.46706 * 305.00063 * 5 4 2 7 7 C 1.52994 * 109.47012 * 185.00041 * 5 4 2 8 8 N 1.46495 * 109.46935 * 64.99944 * 5 4 2 9 9 C 1.36943 * 119.99753 * 204.99837 * 8 5 4 10 10 H 1.07996 * 119.99859 * 0.02562 * 9 8 5 11 11 C 1.38811 * 119.99783 * 180.02562 * 9 8 5 12 12 N 1.31618 * 120.00212 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00007 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47187 * 89.99505 * 13 11 9 15 15 H 1.48498 * 109.47343 * 209.99616 * 13 11 9 16 16 H 1.48499 * 109.47028 * 330.00082 * 13 11 9 17 17 N 1.46496 * 109.47233 * 120.00207 * 2 1 3 18 18 C 1.34775 * 120.00003 * 275.00018 * 17 2 1 19 19 O 1.21511 * 119.99928 * 0.02562 * 18 17 2 20 20 C 1.48227 * 120.00254 * 179.97438 * 18 17 2 21 21 C 1.39626 * 119.65542 * 180.23182 * 20 18 17 22 22 C 1.38541 * 119.24823 * 180.29714 * 21 20 18 23 23 C 1.38589 * 118.54913 * 359.47905 * 22 21 20 24 24 C 1.39590 * 119.24721 * 0.25273 * 23 22 21 25 25 C 1.48226 * 119.64900 * 179.97438 * 24 23 22 26 26 N 1.34777 * 119.99387 * 180.02562 * 25 24 23 27 27 O 1.21500 * 120.00337 * 0.02562 * 25 24 23 28 28 N 1.32337 * 119.65154 * 359.97438 * 20 18 17 29 29 H 1.08999 * 109.47351 * 300.00087 * 1 2 3 30 30 H 1.08999 * 109.47076 * 60.00192 * 1 2 3 31 31 H 1.09003 * 109.46965 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47240 * 295.00145 * 4 2 1 33 33 H 1.08997 * 109.46937 * 54.99966 * 4 2 1 34 34 H 1.09004 * 109.47098 * 179.97438 * 7 5 4 35 35 H 1.09000 * 109.47403 * 299.99595 * 7 5 4 36 36 H 1.09005 * 109.47436 * 60.00036 * 7 5 4 37 37 H 0.96996 * 120.00268 * 24.99780 * 8 5 4 38 38 H 0.97000 * 120.00265 * 180.02562 * 12 11 9 39 39 H 0.96999 * 120.00357 * 94.99717 * 17 2 1 40 40 H 1.08010 * 120.37857 * 0.04838 * 21 20 18 41 41 H 1.08002 * 120.72910 * 179.75974 * 22 21 20 42 42 H 1.08007 * 120.37338 * 180.23181 * 23 22 21 43 43 H 0.97005 * 120.00529 * 0.02562 * 26 25 24 44 44 H 0.96999 * 119.99702 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6240 8 7 4.1536 -1.3342 -0.1825 9 6 5.3944 -0.9856 0.2806 10 1 5.9385 -0.1790 -0.1880 11 6 5.9525 -1.6690 1.3521 12 7 5.2890 -2.6517 1.9235 13 14 7.6446 -1.1931 1.9842 14 1 7.5057 -0.1563 3.0383 15 1 8.3155 -2.3898 2.5524 16 1 8.4578 -0.6545 0.8645 17 7 2.0184 -0.6906 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8577 1.1605 2.4118 20 6 2.6407 -0.7172 3.5675 21 6 2.7666 -0.0149 4.7677 22 6 3.2347 -0.6748 5.8923 23 6 3.5525 -2.0197 5.7867 24 6 3.3975 -2.6627 4.5575 25 6 3.7353 -4.1007 4.4344 26 7 3.5887 -4.7283 3.2507 27 8 4.1442 -4.7135 5.4005 28 7 2.9525 -2.0016 3.5005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7516 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 5.1508 -1.1477 -2.6702 35 1 3.7723 -2.2741 -2.6700 36 1 3.6263 -0.6886 -3.4658 37 1 3.6647 -2.0584 0.2386 38 1 5.6789 -3.1291 2.6725 39 1 2.2491 -1.6318 1.1526 40 1 2.5060 1.0321 4.8178 41 1 3.3451 -0.1539 6.8319 42 1 3.9163 -2.5639 6.6458 43 1 3.2626 -4.2389 2.4792 44 1 3.8101 -5.6692 3.1700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146656231.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:05 Heat of formation + Delta-G solvation = -44.802792 kcal Electronic energy + Delta-G solvation = -28756.130300 eV Core-core repulsion = 24900.990052 eV Total energy + Delta-G solvation = -3855.140248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.69136 -40.51190 -39.39841 -38.17880 -35.73020 -34.70486 -33.96773 -33.35798 -32.52071 -31.54836 -30.07437 -27.54719 -25.84925 -25.59277 -25.43420 -22.80903 -21.72618 -21.60524 -21.06385 -19.19319 -18.98979 -18.40275 -17.70468 -17.14909 -16.93025 -16.61557 -16.27584 -16.08164 -15.65983 -15.54517 -15.36987 -15.26813 -14.80836 -14.36993 -14.15998 -14.11510 -13.91909 -13.52293 -13.26633 -13.16350 -13.02395 -12.90579 -12.75864 -12.57759 -12.24167 -12.11617 -11.73426 -11.63058 -11.51387 -11.34222 -10.98496 -10.90483 -10.76001 -10.43353 -10.38053 -10.15767 -9.74359 -8.67177 -7.71604 -4.90090 -0.41998 0.12372 1.40064 1.47773 1.47937 1.59700 2.14314 2.34830 2.61961 2.64525 3.10921 3.23218 3.59539 3.81870 3.93806 3.99589 4.05075 4.09495 4.14043 4.24099 4.44024 4.55369 4.57570 4.63046 4.75434 4.89251 4.93239 4.97857 5.02147 5.08116 5.14553 5.19878 5.22591 5.41881 5.48285 5.55410 5.68175 5.71325 5.80329 5.99320 6.46030 6.48629 6.68251 6.92968 7.38543 7.46600 7.59279 8.30190 8.60255 9.44243 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010044 B = 0.006772 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.171533 B = 4133.675762 C = 5287.658020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.143 3.857 3 H 0.059 0.941 4 C -0.119 4.119 5 C 0.162 3.838 6 H 0.026 0.974 7 C -0.152 4.152 8 N -0.714 5.714 9 C -0.230 4.230 10 H 0.045 0.955 11 C -0.033 4.033 12 N -0.894 5.894 13 Si 0.918 3.082 14 H -0.309 1.309 15 H -0.305 1.305 16 H -0.288 1.288 17 N -0.668 5.668 18 C 0.575 3.425 19 O -0.584 6.584 20 C 0.061 3.939 21 C -0.106 4.106 22 C -0.083 4.083 23 C -0.108 4.108 24 C 0.065 3.935 25 C 0.585 3.415 26 N -0.796 5.796 27 O -0.592 6.592 28 N -0.377 5.377 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.025 0.975 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.378 0.622 38 H 0.240 0.760 39 H 0.412 0.588 40 H 0.154 0.846 41 H 0.184 0.816 42 H 0.157 0.843 43 H 0.422 0.578 44 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.192 0.454 -0.611 11.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.038 3.962 3 H 0.077 0.923 4 C -0.157 4.157 5 C 0.053 3.947 6 H 0.044 0.956 7 C -0.212 4.212 8 N -0.357 5.357 9 C -0.363 4.363 10 H 0.063 0.937 11 C -0.229 4.229 12 N -0.542 5.542 13 Si 0.753 3.247 14 H -0.238 1.238 15 H -0.232 1.232 16 H -0.215 1.215 17 N -0.318 5.318 18 C 0.361 3.639 19 O -0.466 6.466 20 C -0.081 4.081 21 C -0.127 4.127 22 C -0.108 4.108 23 C -0.129 4.129 24 C -0.076 4.076 25 C 0.369 3.631 26 N -0.356 5.356 27 O -0.474 6.474 28 N -0.091 5.091 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.214 0.786 38 H 0.050 0.950 39 H 0.251 0.749 40 H 0.172 0.828 41 H 0.201 0.799 42 H 0.174 0.826 43 H 0.254 0.746 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -11.113 0.635 -0.774 11.158 hybrid contribution 1.900 0.027 0.956 2.127 sum -9.213 0.663 0.182 9.238 Atomic orbital electron populations 1.22109 0.93684 1.02755 1.02438 1.21040 0.94445 0.96423 0.84262 0.92269 1.22122 0.94872 1.01608 0.97122 1.20462 0.92092 0.94360 0.87759 0.95614 1.22263 0.99866 1.00845 0.98257 1.42392 1.17522 1.40227 1.35598 1.19010 0.94530 1.12296 1.10476 0.93684 1.24739 0.98508 0.99883 0.99795 1.69564 1.36253 1.23612 1.24792 0.86015 0.84947 0.75945 0.77757 1.23843 1.23191 1.21454 1.45864 1.63129 1.14719 1.08133 1.17896 0.76912 0.85503 0.83630 1.90668 1.53821 1.16286 1.85778 1.21223 1.01162 0.91010 0.94675 1.22476 0.95831 1.02102 0.92306 1.21894 0.95660 0.93281 0.99960 1.22506 0.96174 0.95838 0.98365 1.21087 1.01145 0.94833 0.90538 1.17831 0.76473 0.85450 0.83385 1.43398 1.65972 1.14432 1.11845 1.90726 1.49717 1.67277 1.39633 1.67326 1.05015 1.08011 1.28764 0.94106 0.89463 0.91342 0.90390 0.87386 0.95552 0.93214 0.91581 0.78631 0.94973 0.74868 0.82813 0.79859 0.82558 0.74555 0.76348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.48 71.98 0.68 -2.77 16 2 C 0.14 4.11 2.57 44.99 0.12 4.23 16 3 H 0.06 2.02 7.58 -2.39 -0.02 2.00 16 4 C -0.12 -2.99 4.43 30.60 0.14 -2.86 16 5 C 0.16 5.47 2.89 44.99 0.13 5.60 16 6 H 0.03 0.98 8.08 -2.39 -0.02 0.96 16 7 C -0.15 -4.66 9.49 71.98 0.68 -3.98 16 8 N -0.71 -29.65 3.84 -322.96 -1.24 -30.89 16 9 C -0.23 -11.50 9.93 84.03 0.83 -10.66 16 10 H 0.05 2.38 7.83 -2.91 -0.02 2.36 16 11 C -0.03 -1.67 5.50 84.86 0.47 -1.20 16 12 N -0.89 -43.10 11.16 21.65 0.24 -42.86 16 13 Si 0.92 45.20 29.55 68.60 2.03 47.23 16 14 H -0.31 -15.83 7.11 99.48 0.71 -15.13 16 15 H -0.30 -15.41 7.11 99.48 0.71 -14.71 16 16 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 17 N -0.67 -22.63 3.79 -445.04 -1.69 -24.31 16 18 C 0.58 22.21 7.78 86.90 0.68 22.89 16 19 O -0.58 -24.70 15.98 -3.75 -0.06 -24.76 16 20 C 0.06 2.24 6.75 42.06 0.28 2.53 16 21 C -0.11 -3.36 9.63 22.68 0.22 -3.14 16 22 C -0.08 -2.19 10.16 22.43 0.23 -1.96 16 23 C -0.11 -3.33 9.63 22.68 0.22 -3.11 16 24 C 0.07 2.34 6.71 42.05 0.28 2.63 16 25 C 0.58 21.45 7.64 86.90 0.66 22.11 16 26 N -0.80 -25.04 8.25 -175.35 -1.45 -26.48 16 27 O -0.59 -24.12 17.16 -3.71 -0.06 -24.19 16 28 N -0.38 -13.80 7.70 -174.09 -1.34 -15.14 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.38 15.75 5.70 -92.71 -0.53 15.22 16 38 H 0.24 12.12 7.67 -92.71 -0.71 11.41 16 39 H 0.41 14.14 5.84 -92.71 -0.54 13.60 16 40 H 0.15 4.49 7.64 -2.91 -0.02 4.47 16 41 H 0.18 3.18 8.06 -2.91 -0.02 3.16 16 42 H 0.16 4.37 7.64 -2.91 -0.02 4.34 16 43 H 0.42 13.50 7.73 -92.70 -0.72 12.79 16 44 H 0.41 11.00 8.93 -92.71 -0.83 10.17 16 Total: -1.00 -62.72 369.19 0.56 -62.16 By element: Atomic # 1 Polarization: 50.41 SS G_CDS: -1.49 Total: 48.93 kcal Atomic # 6 Polarization: 24.69 SS G_CDS: 5.62 Total: 30.31 kcal Atomic # 7 Polarization: -134.21 SS G_CDS: -5.47 Total: -139.69 kcal Atomic # 8 Polarization: -48.82 SS G_CDS: -0.12 Total: -48.94 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -62.72 0.56 -62.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146656231.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.360 kcal (2) G-P(sol) polarization free energy of solvation -62.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds