Wall clock time and date at job start Fri Apr 10 2020 18:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47246 * 2 1 4 4 C 1.53003 * 109.46912 * 239.99729 * 2 1 3 5 5 C 1.52994 * 109.46916 * 174.79315 * 4 2 1 6 6 H 1.08993 * 109.47100 * 54.06560 * 5 4 2 7 7 C 1.52999 * 109.47618 * 294.06225 * 5 4 2 8 8 N 1.46506 * 109.47126 * 174.06320 * 5 4 2 9 9 C 1.34779 * 119.99905 * 201.44816 * 8 5 4 10 10 O 1.21505 * 120.00314 * 4.86787 * 9 8 5 11 11 C 1.48224 * 119.99590 * 184.87287 * 9 8 5 12 12 C 1.39627 * 119.65357 * 185.10546 * 11 9 8 13 13 C 1.38541 * 119.24786 * 180.27225 * 12 11 9 14 14 C 1.38581 * 118.55269 * 359.43746 * 13 12 11 15 15 C 1.39585 * 119.24935 * 0.27484 * 14 13 12 16 16 C 1.48226 * 119.65750 * 180.02562 * 15 14 13 17 17 N 1.34778 * 119.99982 * 174.88135 * 16 15 14 18 18 O 1.21500 * 119.99919 * 354.88157 * 16 15 14 19 19 N 1.32341 * 119.65509 * 4.80201 * 11 9 8 20 20 N 1.46500 * 109.47155 * 120.00262 * 2 1 3 21 21 C 1.36933 * 119.99961 * 278.61255 * 20 2 1 22 22 H 1.08004 * 120.00170 * 4.96114 * 21 20 2 23 23 C 1.38810 * 120.00439 * 184.96661 * 21 20 2 24 24 N 1.31615 * 120.00605 * 184.71871 * 23 21 20 25 25 Si 1.86807 * 119.99566 * 4.72263 * 23 21 20 26 26 H 1.48501 * 109.47167 * 94.30699 * 25 23 21 27 27 H 1.48501 * 109.47043 * 214.31026 * 25 23 21 28 28 H 1.48500 * 109.46968 * 334.30658 * 25 23 21 29 29 H 1.09008 * 109.46922 * 59.99718 * 1 2 3 30 30 H 1.08997 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46912 * 300.00146 * 1 2 3 32 32 H 1.09003 * 109.46701 * 54.80051 * 4 2 1 33 33 H 1.08995 * 109.47370 * 294.79965 * 4 2 1 34 34 H 1.08998 * 109.47696 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.46948 * 300.00059 * 7 5 4 36 36 H 1.09003 * 109.47140 * 59.99819 * 7 5 4 37 37 H 0.97003 * 120.00110 * 21.44161 * 8 5 4 38 38 H 1.08002 * 120.37655 * 0.02562 * 12 11 9 39 39 H 1.07999 * 120.72680 * 179.70830 * 13 12 11 40 40 H 1.08006 * 120.38167 * 180.25248 * 14 13 12 41 41 H 0.97001 * 120.00113 * 4.99870 * 17 16 15 42 42 H 0.96999 * 119.99902 * 185.00288 * 17 16 15 43 43 H 0.97002 * 120.00050 * 98.60727 * 20 2 1 44 44 H 0.97004 * 120.00248 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5643 -0.6090 -1.3164 6 1 3.9967 -0.9701 -0.3834 7 6 3.9591 0.8538 -1.5290 8 7 4.0649 -1.4168 -2.4314 9 6 5.3482 -1.8284 -2.4425 10 8 6.0660 -1.6057 -1.4877 11 6 5.8840 -2.5527 -3.6195 12 6 7.1806 -3.0695 -3.5813 13 6 7.6749 -3.7400 -4.6882 14 6 6.8548 -3.8845 -5.7959 15 6 5.5663 -3.3486 -5.7651 16 6 4.6812 -3.4984 -6.9447 17 7 3.4028 -3.0756 -6.8860 18 8 5.1082 -4.0024 -7.9645 19 7 5.1263 -2.7081 -4.6934 20 7 2.0184 -0.6907 1.1961 21 6 2.0792 -0.0276 2.3927 22 1 1.6929 0.9778 2.4732 23 6 2.6372 -0.6476 3.5022 24 7 2.6122 -0.0477 4.6734 25 14 3.4239 -2.3335 3.3329 26 1 4.8837 -2.1783 3.1089 27 1 3.1939 -3.1140 4.5752 28 1 2.8195 -3.0482 2.1802 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6025 -0.2641 -2.1368 33 1 1.7547 -1.7723 -1.2039 34 1 5.0451 0.9339 -1.5773 35 1 3.5267 1.2149 -2.4622 36 1 3.5867 1.4550 -0.6995 37 1 3.4726 -1.6555 -3.1617 38 1 7.7926 -2.9444 -2.7002 39 1 8.6760 -4.1452 -4.6863 40 1 7.2086 -4.4056 -6.6733 41 1 3.0822 -2.6082 -6.0988 42 1 2.8034 -3.2387 -7.6309 43 1 2.2986 -1.6177 1.1405 44 1 3.0019 -0.4811 5.4489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146656232.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:10 Heat of formation + Delta-G solvation = -30.239109 kcal Electronic energy + Delta-G solvation = -26590.105368 eV Core-core repulsion = 22735.596649 eV Total energy + Delta-G solvation = -3854.508719 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.25596 -39.83612 -38.83889 -37.13684 -34.84695 -34.32089 -33.11318 -32.28458 -31.92446 -30.42375 -29.09566 -26.47660 -25.40919 -25.14478 -23.43557 -22.21597 -21.23434 -20.48398 -19.76955 -18.76507 -18.01407 -17.54941 -17.28624 -16.45994 -16.16803 -15.73108 -15.53872 -15.15840 -15.08134 -14.73814 -14.26866 -14.01336 -13.94435 -13.77693 -13.53786 -12.99168 -12.70380 -12.57360 -12.37652 -12.15494 -11.88012 -11.54607 -11.24096 -11.12658 -10.89213 -10.63870 -10.54632 -10.52899 -10.47711 -10.31632 -10.15849 -10.02770 -9.79273 -9.70961 -9.56778 -9.02629 -8.88902 -7.23035 -5.74794 -3.09974 0.03682 0.42015 2.08131 2.73706 2.82131 2.97432 3.39703 3.45616 3.49604 3.51000 3.59967 4.34153 4.36254 4.44974 4.49888 4.62380 4.95390 4.99810 5.03299 5.15843 5.40207 5.42987 5.51964 5.56131 5.58313 5.70672 5.87097 5.93573 5.95257 6.07435 6.16628 6.27252 6.29033 6.32870 6.41685 6.51751 6.61518 6.75556 6.82248 6.99353 7.04996 7.49927 7.73878 8.02668 8.10737 8.44599 9.23941 9.96524 10.16068 11.43533 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016491 B = 0.003111 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.497259 B = 8998.452084 C = 9960.925211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.178 3.822 3 H 0.059 0.941 4 C -0.132 4.132 5 C 0.138 3.862 6 H 0.101 0.899 7 C -0.159 4.159 8 N -0.704 5.704 9 C 0.566 3.434 10 O -0.521 6.521 11 C 0.086 3.914 12 C -0.088 4.088 13 C -0.085 4.085 14 C -0.092 4.092 15 C 0.070 3.930 16 C 0.582 3.418 17 N -0.834 5.834 18 O -0.536 6.536 19 N -0.434 5.434 20 N -0.749 5.749 21 C -0.241 4.241 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.933 5.933 25 Si 0.883 3.117 26 H -0.283 1.283 27 H -0.293 1.293 28 H -0.280 1.280 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.404 0.596 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.412 0.588 42 H 0.407 0.593 43 H 0.362 0.638 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.669 -6.158 -24.637 25.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.068 3.932 3 H 0.077 0.923 4 C -0.170 4.170 5 C 0.035 3.965 6 H 0.119 0.881 7 C -0.217 4.217 8 N -0.354 5.354 9 C 0.350 3.650 10 O -0.396 6.396 11 C -0.055 4.055 12 C -0.109 4.109 13 C -0.110 4.110 14 C -0.113 4.113 15 C -0.071 4.071 16 C 0.365 3.635 17 N -0.397 5.397 18 O -0.411 6.411 19 N -0.149 5.149 20 N -0.394 5.394 21 C -0.371 4.371 22 H 0.107 0.893 23 C -0.189 4.189 24 N -0.581 5.581 25 Si 0.714 3.286 26 H -0.209 1.209 27 H -0.219 1.219 28 H -0.206 1.206 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.239 0.761 38 H 0.175 0.825 39 H 0.170 0.830 40 H 0.172 0.828 41 H 0.243 0.757 42 H 0.238 0.762 43 H 0.195 0.805 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.750 -5.778 -24.311 25.435 hybrid contribution 0.640 -1.568 -0.205 1.706 sum 5.391 -7.345 -24.516 26.154 Atomic orbital electron populations 1.22389 0.98676 1.00868 1.00454 1.20211 0.92105 0.95879 0.84955 0.92300 1.22149 0.93331 1.01771 0.99774 1.21168 0.94559 0.90876 0.89878 0.88104 1.22166 1.01659 0.95794 1.02111 1.46020 1.10767 1.53131 1.25476 1.17793 0.82868 0.79099 0.85274 1.90860 1.58197 1.56190 1.34323 1.21307 0.92276 0.99013 0.92952 1.22443 0.95263 0.93366 0.99787 1.21710 1.00722 0.96685 0.91930 1.22329 0.92876 0.96466 0.99631 1.21039 0.93954 0.98941 0.93131 1.17787 0.82206 0.77571 0.85941 1.43624 1.11706 1.60415 1.23952 1.90842 1.74844 1.44693 1.30764 1.67347 1.36353 1.12022 0.99147 1.42924 1.78946 1.11662 1.05823 1.19019 1.32869 0.99645 0.85530 0.89264 1.24669 1.00955 0.97827 0.95492 1.69705 1.50581 1.38706 0.99117 0.86573 0.80184 0.85403 0.76425 1.20926 1.21925 1.20648 0.94272 0.93638 0.92260 0.91307 0.91616 0.92658 0.93028 0.90192 0.76121 0.82536 0.82992 0.82848 0.75728 0.76175 0.80474 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.44 37.16 0.35 -2.32 16 2 C 0.18 3.13 2.77 -67.93 -0.19 2.94 16 3 H 0.06 1.07 6.34 -51.93 -0.33 0.74 16 4 C -0.13 -1.80 4.36 -26.73 -0.12 -1.91 16 5 C 0.14 2.05 2.59 -67.93 -0.18 1.87 16 6 H 0.10 1.92 7.05 -51.93 -0.37 1.56 16 7 C -0.16 -2.24 9.21 37.16 0.34 -1.90 16 8 N -0.70 -8.73 5.09 -54.63 -0.28 -9.01 16 9 C 0.57 7.90 7.72 -12.16 -0.09 7.81 16 10 O -0.52 -9.25 16.03 5.36 0.09 -9.16 16 11 C 0.09 0.96 6.75 -83.03 -0.56 0.40 16 12 C -0.09 -0.82 9.63 -38.95 -0.38 -1.20 16 13 C -0.08 -0.59 10.16 -39.34 -0.40 -0.99 16 14 C -0.09 -0.73 9.63 -38.95 -0.38 -1.10 16 15 C 0.07 0.65 6.75 -83.02 -0.56 0.09 16 16 C 0.58 5.42 8.08 -12.15 -0.10 5.32 16 17 N -0.83 -5.03 8.86 30.62 0.27 -4.76 16 18 O -0.54 -6.50 17.17 5.37 0.09 -6.41 16 19 N -0.43 -4.19 8.75 -6.38 -0.06 -4.24 16 20 N -0.75 -16.95 4.31 -53.42 -0.23 -17.18 16 21 C -0.24 -6.61 10.37 -15.06 -0.16 -6.77 16 22 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -29.28 13.97 55.49 0.78 -28.51 16 25 Si 0.88 22.54 28.00 -169.99 -4.76 17.78 16 26 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 28 H -0.28 -6.68 6.16 56.52 0.35 -6.33 16 29 H 0.04 0.52 8.14 -51.92 -0.42 0.09 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 1.22 6.49 -51.93 -0.34 0.89 16 37 H 0.40 3.89 7.93 -40.82 -0.32 3.57 16 38 H 0.16 1.42 7.65 -52.49 -0.40 1.01 16 39 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.15 1.02 7.65 -52.48 -0.40 0.62 16 41 H 0.41 1.98 8.17 -40.82 -0.33 1.65 16 42 H 0.41 1.76 8.93 -40.82 -0.36 1.40 16 43 H 0.36 8.27 5.46 -40.82 -0.22 8.05 16 44 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 372.61 15.07 5.62 5.62 Total: -1.00 -35.24 372.61 -7.06 -42.30 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -6.07 Total: 11.24 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -2.50 Total: 2.33 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: 0.48 Total: -63.70 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.18 Total: -15.57 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.76 Total: 17.78 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.24 -7.06 -42.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146656232.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.060 kcal (2) G-P(sol) polarization free energy of solvation -35.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds