Wall clock time and date at job start Fri Apr 10 2020 18:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47246 * 2 1 4 4 C 1.53003 * 109.46912 * 239.99729 * 2 1 3 5 5 C 1.52994 * 109.46916 * 174.79315 * 4 2 1 6 6 H 1.08993 * 109.47100 * 54.06560 * 5 4 2 7 7 C 1.52999 * 109.47618 * 294.06225 * 5 4 2 8 8 N 1.46506 * 109.47126 * 174.06320 * 5 4 2 9 9 C 1.34779 * 119.99905 * 201.44816 * 8 5 4 10 10 O 1.21505 * 120.00314 * 4.86787 * 9 8 5 11 11 C 1.48224 * 119.99590 * 184.87287 * 9 8 5 12 12 C 1.39627 * 119.65357 * 185.10546 * 11 9 8 13 13 C 1.38541 * 119.24786 * 180.27225 * 12 11 9 14 14 C 1.38581 * 118.55269 * 359.43746 * 13 12 11 15 15 C 1.39585 * 119.24935 * 0.27484 * 14 13 12 16 16 C 1.48226 * 119.65750 * 180.02562 * 15 14 13 17 17 N 1.34778 * 119.99982 * 174.88135 * 16 15 14 18 18 O 1.21500 * 119.99919 * 354.88157 * 16 15 14 19 19 N 1.32341 * 119.65509 * 4.80201 * 11 9 8 20 20 N 1.46500 * 109.47155 * 120.00262 * 2 1 3 21 21 C 1.36933 * 119.99961 * 278.61255 * 20 2 1 22 22 H 1.08004 * 120.00170 * 4.96114 * 21 20 2 23 23 C 1.38810 * 120.00439 * 184.96661 * 21 20 2 24 24 N 1.31615 * 120.00605 * 184.71871 * 23 21 20 25 25 Si 1.86807 * 119.99566 * 4.72263 * 23 21 20 26 26 H 1.48501 * 109.47167 * 94.30699 * 25 23 21 27 27 H 1.48501 * 109.47043 * 214.31026 * 25 23 21 28 28 H 1.48500 * 109.46968 * 334.30658 * 25 23 21 29 29 H 1.09008 * 109.46922 * 59.99718 * 1 2 3 30 30 H 1.08997 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46912 * 300.00146 * 1 2 3 32 32 H 1.09003 * 109.46701 * 54.80051 * 4 2 1 33 33 H 1.08995 * 109.47370 * 294.79965 * 4 2 1 34 34 H 1.08998 * 109.47696 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.46948 * 300.00059 * 7 5 4 36 36 H 1.09003 * 109.47140 * 59.99819 * 7 5 4 37 37 H 0.97003 * 120.00110 * 21.44161 * 8 5 4 38 38 H 1.08002 * 120.37655 * 0.02562 * 12 11 9 39 39 H 1.07999 * 120.72680 * 179.70830 * 13 12 11 40 40 H 1.08006 * 120.38167 * 180.25248 * 14 13 12 41 41 H 0.97001 * 120.00113 * 4.99870 * 17 16 15 42 42 H 0.96999 * 119.99902 * 185.00288 * 17 16 15 43 43 H 0.97002 * 120.00050 * 98.60727 * 20 2 1 44 44 H 0.97004 * 120.00248 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5643 -0.6090 -1.3164 6 1 3.9967 -0.9701 -0.3834 7 6 3.9591 0.8538 -1.5290 8 7 4.0649 -1.4168 -2.4314 9 6 5.3482 -1.8284 -2.4425 10 8 6.0660 -1.6057 -1.4877 11 6 5.8840 -2.5527 -3.6195 12 6 7.1806 -3.0695 -3.5813 13 6 7.6749 -3.7400 -4.6882 14 6 6.8548 -3.8845 -5.7959 15 6 5.5663 -3.3486 -5.7651 16 6 4.6812 -3.4984 -6.9447 17 7 3.4028 -3.0756 -6.8860 18 8 5.1082 -4.0024 -7.9645 19 7 5.1263 -2.7081 -4.6934 20 7 2.0184 -0.6907 1.1961 21 6 2.0792 -0.0276 2.3927 22 1 1.6929 0.9778 2.4732 23 6 2.6372 -0.6476 3.5022 24 7 2.6122 -0.0477 4.6734 25 14 3.4239 -2.3335 3.3329 26 1 4.8837 -2.1783 3.1089 27 1 3.1939 -3.1140 4.5752 28 1 2.8195 -3.0482 2.1802 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6025 -0.2641 -2.1368 33 1 1.7547 -1.7723 -1.2039 34 1 5.0451 0.9339 -1.5773 35 1 3.5267 1.2149 -2.4622 36 1 3.5867 1.4550 -0.6995 37 1 3.4726 -1.6555 -3.1617 38 1 7.7926 -2.9444 -2.7002 39 1 8.6760 -4.1452 -4.6863 40 1 7.2086 -4.4056 -6.6733 41 1 3.0822 -2.6082 -6.0988 42 1 2.8034 -3.2387 -7.6309 43 1 2.2986 -1.6177 1.1405 44 1 3.0019 -0.4811 5.4489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146656232.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:09 Heat of formation + Delta-G solvation = -59.148326 kcal Electronic energy + Delta-G solvation = -26591.358965 eV Core-core repulsion = 22735.596649 eV Total energy + Delta-G solvation = -3855.762317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.02019 -40.78325 -39.66623 -38.50550 -36.26816 -34.98526 -34.28939 -33.64587 -32.80017 -31.81368 -30.66087 -27.67600 -26.19467 -25.93814 -25.32403 -23.24167 -22.10623 -21.54614 -21.16962 -19.86223 -19.35580 -18.69711 -17.99015 -17.20653 -17.11735 -16.86812 -16.54121 -16.37719 -16.03306 -15.86436 -15.58555 -15.35810 -15.15386 -14.72408 -14.50037 -14.33379 -14.18980 -13.94153 -13.63170 -13.25435 -13.21914 -12.93128 -12.84804 -12.47766 -12.19162 -12.11638 -11.95631 -11.87266 -11.71938 -11.55434 -11.21116 -11.15634 -10.94814 -10.81201 -10.77165 -10.46682 -10.10994 -9.24385 -8.00324 -5.30393 -0.67638 -0.26073 1.32919 1.33597 1.41197 1.43505 1.86330 1.92043 2.25008 2.48205 2.73097 2.85824 3.32417 3.59830 3.65324 3.74559 3.83904 3.87500 3.90423 4.10293 4.24101 4.29917 4.36890 4.50697 4.59703 4.72897 4.85984 4.87310 4.94003 4.97504 5.00057 5.09868 5.17465 5.26122 5.31037 5.46351 5.49457 5.63564 5.75529 5.83951 6.09668 6.25560 6.35055 6.57977 7.10887 7.13187 7.17409 7.91768 8.07765 9.21771 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016491 B = 0.003111 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.497259 B = 8998.452084 C = 9960.925211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.167 3.833 3 H 0.051 0.949 4 C -0.117 4.117 5 C 0.142 3.858 6 H 0.054 0.946 7 C -0.153 4.153 8 N -0.689 5.689 9 C 0.564 3.436 10 O -0.568 6.568 11 C 0.067 3.933 12 C -0.094 4.094 13 C -0.068 4.068 14 C -0.088 4.088 15 C 0.058 3.942 16 C 0.581 3.419 17 N -0.816 5.816 18 O -0.569 6.569 19 N -0.427 5.427 20 N -0.752 5.752 21 C -0.213 4.213 22 H 0.060 0.940 23 C -0.064 4.064 24 N -0.985 5.985 25 Si 0.946 3.054 26 H -0.293 1.293 27 H -0.296 1.296 28 H -0.253 1.253 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.027 0.973 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.420 0.580 38 H 0.155 0.845 39 H 0.189 0.811 40 H 0.169 0.831 41 H 0.420 0.580 42 H 0.417 0.583 43 H 0.362 0.638 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 -7.631 -28.200 29.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.060 3.940 3 H 0.069 0.931 4 C -0.155 4.155 5 C 0.037 3.963 6 H 0.073 0.927 7 C -0.211 4.211 8 N -0.340 5.340 9 C 0.349 3.651 10 O -0.447 6.447 11 C -0.074 4.074 12 C -0.115 4.115 13 C -0.093 4.093 14 C -0.108 4.108 15 C -0.083 4.083 16 C 0.364 3.636 17 N -0.379 5.379 18 O -0.448 6.448 19 N -0.142 5.142 20 N -0.397 5.397 21 C -0.345 4.345 22 H 0.078 0.922 23 C -0.255 4.255 24 N -0.636 5.636 25 Si 0.775 3.225 26 H -0.221 1.221 27 H -0.223 1.223 28 H -0.178 1.178 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.131 0.869 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.258 0.742 38 H 0.172 0.828 39 H 0.206 0.794 40 H 0.186 0.814 41 H 0.252 0.748 42 H 0.250 0.750 43 H 0.196 0.804 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.283 -7.247 -27.957 29.197 hybrid contribution 0.717 -1.017 0.781 1.470 sum 5.001 -8.264 -27.176 28.841 Atomic orbital electron populations 1.22259 0.97006 1.01332 1.00954 1.20524 0.93134 0.95658 0.84730 0.93059 1.22030 0.92176 1.02153 0.99171 1.20921 0.95246 0.91231 0.88862 0.92737 1.22092 1.00700 0.95310 1.03007 1.45804 1.10698 1.52352 1.25145 1.18216 0.82777 0.78593 0.85523 1.90834 1.59359 1.58157 1.36336 1.20940 0.93276 1.00559 0.92619 1.22568 0.94680 0.93588 1.00685 1.22055 1.01936 0.95038 0.90303 1.22609 0.92359 0.95576 1.00282 1.21203 0.94789 0.99340 0.92948 1.17829 0.82932 0.77416 0.85461 1.43533 1.10811 1.59072 1.24523 1.90830 1.75596 1.46538 1.31793 1.67222 1.36107 1.12044 0.98834 1.42985 1.79077 1.11715 1.05902 1.19009 1.29925 0.98367 0.87175 0.92177 1.25375 1.02889 1.01829 0.95383 1.69865 1.52984 1.40744 1.00019 0.85532 0.78496 0.81442 0.76987 1.22059 1.22315 1.17771 0.90231 0.93155 0.95337 0.86855 0.90774 0.94341 0.89786 0.91930 0.74174 0.82765 0.79390 0.81397 0.74775 0.75044 0.80433 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.69 9.44 71.98 0.68 -4.01 16 2 C 0.17 5.60 2.77 44.99 0.12 5.72 16 3 H 0.05 1.82 6.34 -2.39 -0.02 1.80 16 4 C -0.12 -2.81 4.36 30.59 0.13 -2.68 16 5 C 0.14 4.00 2.59 44.99 0.12 4.12 16 6 H 0.05 2.09 7.05 -2.39 -0.02 2.07 16 7 C -0.15 -4.16 9.21 71.98 0.66 -3.50 16 8 N -0.69 -15.82 5.09 -445.05 -2.27 -18.09 16 9 C 0.56 15.37 7.72 86.90 0.67 16.04 16 10 O -0.57 -20.62 16.03 -3.73 -0.06 -20.68 16 11 C 0.07 1.39 6.75 42.06 0.28 1.67 16 12 C -0.09 -1.61 9.63 22.68 0.22 -1.40 16 13 C -0.07 -0.74 10.16 22.42 0.23 -0.51 16 14 C -0.09 -1.13 9.63 22.68 0.22 -0.91 16 15 C 0.06 0.94 6.75 42.04 0.28 1.23 16 16 C 0.58 9.52 8.08 86.90 0.70 10.22 16 17 N -0.82 -7.69 8.86 -175.35 -1.55 -9.24 16 18 O -0.57 -12.80 17.17 -3.71 -0.06 -12.86 16 19 N -0.43 -7.30 8.75 -174.08 -1.52 -8.82 16 20 N -0.75 -33.76 4.31 -322.94 -1.39 -35.15 16 21 C -0.21 -11.99 10.37 84.03 0.87 -11.12 16 22 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 23 C -0.06 -3.80 5.50 84.86 0.47 -3.34 16 24 N -0.98 -64.10 13.97 21.65 0.30 -63.80 16 25 Si 0.95 47.62 28.00 68.60 1.92 49.54 16 26 H -0.29 -15.17 7.11 99.48 0.71 -14.46 16 27 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 28 H -0.25 -11.39 6.16 99.48 0.61 -10.78 16 29 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.06 1.91 6.49 -2.39 -0.02 1.89 16 37 H 0.42 6.77 7.93 -92.71 -0.74 6.03 16 38 H 0.15 2.69 7.65 -2.91 -0.02 2.67 16 39 H 0.19 0.64 8.06 -2.91 -0.02 0.62 16 40 H 0.17 1.72 7.65 -2.91 -0.02 1.69 16 41 H 0.42 2.73 8.17 -92.71 -0.76 1.97 16 42 H 0.42 2.52 8.93 -92.71 -0.83 1.69 16 43 H 0.36 16.15 5.46 -92.71 -0.51 15.64 16 44 H 0.25 15.94 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -80.84 372.61 -0.82 -81.66 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: -1.85 Total: 25.90 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 5.66 Total: 11.54 kcal Atomic # 7 Polarization: -128.67 SS G_CDS: -6.43 Total: -135.10 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.12 Total: -33.54 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 1.92 Total: 49.54 kcal Total: -80.84 -0.82 -81.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146656232.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.513 kcal (2) G-P(sol) polarization free energy of solvation -80.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds