Wall clock time and date at job start Fri Apr 10 2020 18:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21495 * 120.00535 * 359.97438 * 9 8 5 11 11 C 1.48341 * 119.99888 * 180.02562 * 9 8 5 12 12 C 1.39301 * 119.57122 * 179.72603 * 11 9 8 13 13 C 1.38449 * 119.18683 * 179.79611 * 12 11 9 14 14 C 1.39867 * 118.36050 * 0.47004 * 13 12 11 15 15 C 1.47999 * 120.46351 * 179.77121 * 14 13 12 16 16 N 1.34781 * 120.00264 * 179.97438 * 15 14 13 17 17 O 1.21529 * 120.00300 * 359.97438 * 15 14 13 18 18 C 1.39728 * 119.07238 * 359.75220 * 14 13 12 19 19 N 1.31413 * 120.72041 * 0.02562 * 18 14 13 20 20 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 30 30 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 31 31 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 33 33 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 34 34 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 35 35 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 36 36 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 37 37 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 38 38 H 1.08004 * 120.40368 * 0.02562 * 12 11 9 39 39 H 1.08004 * 120.82053 * 180.19749 * 13 12 11 40 40 H 0.97003 * 119.99795 * 0.02562 * 16 15 14 41 41 H 0.96990 * 120.00361 * 180.02562 * 16 15 14 42 42 H 1.08003 * 119.63897 * 179.97438 * 18 14 13 43 43 H 0.97004 * 119.99747 * 95.00774 * 20 2 1 44 44 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9370 0.4330 -0.5721 11 6 5.5489 2.6341 -1.2670 12 6 6.8028 3.0641 -0.8392 13 6 7.1581 4.3906 -1.0154 14 6 6.2321 5.2529 -1.6114 15 6 6.5613 6.6810 -1.8176 16 7 5.6621 7.5036 -2.3934 17 8 7.6423 7.1121 -1.4678 18 6 4.9920 4.7471 -2.0098 19 7 4.6943 3.4799 -1.8290 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6617 3.5091 24 7 2.9205 -1.9400 3.4511 25 14 2.7899 0.2699 5.1184 26 1 3.2931 -0.6500 6.1700 27 1 3.7495 1.3891 4.9391 28 1 1.4684 0.8113 5.5254 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 3.8002 -2.4818 -2.3594 35 1 3.6547 -1.0591 -3.4193 36 1 5.1716 -1.3615 -2.5380 37 1 3.3284 1.4130 -1.9027 38 1 7.4909 2.3704 -0.3790 39 1 8.1247 4.7517 -0.6964 40 1 4.7991 7.1596 -2.6723 41 1 5.8780 8.4394 -2.5289 42 1 4.2699 5.4049 -2.4706 43 1 2.2490 -1.6318 1.1526 44 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146722407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:14 Heat of formation + Delta-G solvation = -33.584981 kcal Electronic energy + Delta-G solvation = -26778.416262 eV Core-core repulsion = 22923.762455 eV Total energy + Delta-G solvation = -3854.653807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.09297 -39.75627 -38.74559 -36.92407 -34.68423 -34.35818 -33.10276 -32.26512 -31.72369 -30.44731 -28.29279 -26.41663 -25.81200 -23.96119 -23.41282 -22.27293 -21.14771 -20.46388 -19.86559 -18.75282 -18.11859 -17.47638 -17.29379 -16.46941 -15.67770 -15.44516 -15.41669 -15.02287 -14.93730 -14.58649 -14.17071 -13.97811 -13.63946 -13.55185 -13.45817 -13.18066 -12.95580 -12.88072 -12.16418 -12.08908 -11.70016 -11.68909 -11.04359 -10.80573 -10.72522 -10.48743 -10.45857 -10.32337 -10.25185 -10.21374 -10.08560 -9.91847 -9.68528 -9.56954 -9.10353 -8.85745 -8.78301 -6.96262 -6.02325 -3.01627 -0.02743 0.85294 2.20136 2.93930 2.94506 3.15572 3.54954 3.59190 3.69376 3.76159 3.78883 4.30734 4.35587 4.57627 4.65133 4.73106 4.88663 5.04987 5.29806 5.32507 5.40835 5.59419 5.60543 5.64870 5.69207 5.81768 5.87368 5.94089 6.06658 6.10041 6.22836 6.26986 6.27920 6.37036 6.48449 6.58834 6.73113 6.78166 6.85943 7.02523 7.26428 7.72056 7.74149 7.86889 8.35277 8.83054 9.30221 10.16293 10.31015 11.46188 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011134 B = 0.003590 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.155370 B = 7798.231423 C = 8847.020815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.176 3.824 3 H 0.048 0.952 4 C -0.132 4.132 5 C 0.142 3.858 6 H 0.104 0.896 7 C -0.161 4.161 8 N -0.692 5.692 9 C 0.566 3.434 10 O -0.520 6.520 11 C 0.116 3.884 12 C -0.118 4.118 13 C -0.018 4.018 14 C -0.181 4.181 15 C 0.571 3.429 16 N -0.848 5.848 17 O -0.534 6.534 18 C 0.134 3.866 19 N -0.460 5.460 20 N -0.732 5.732 21 C -0.325 4.325 22 H 0.060 0.940 23 C -0.044 4.044 24 N -0.944 5.944 25 Si 1.076 2.924 26 H -0.285 1.285 27 H -0.297 1.297 28 H -0.297 1.297 29 H 0.052 0.948 30 H 0.035 0.965 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.405 0.595 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.402 0.598 41 H 0.408 0.592 42 H 0.164 0.836 43 H 0.365 0.635 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.193 14.302 -17.701 22.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.066 3.934 3 H 0.066 0.934 4 C -0.171 4.171 5 C 0.038 3.962 6 H 0.122 0.878 7 C -0.220 4.220 8 N -0.342 5.342 9 C 0.349 3.651 10 O -0.395 6.395 11 C -0.022 4.022 12 C -0.139 4.139 13 C -0.045 4.045 14 C -0.187 4.187 15 C 0.356 3.644 16 N -0.413 5.413 17 O -0.411 6.411 18 C -0.028 4.028 19 N -0.171 5.171 20 N -0.375 5.375 21 C -0.456 4.456 22 H 0.078 0.922 23 C -0.241 4.241 24 N -0.589 5.589 25 Si 0.907 3.093 26 H -0.210 1.210 27 H -0.224 1.224 28 H -0.224 1.224 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.241 0.759 38 H 0.177 0.823 39 H 0.173 0.827 40 H 0.232 0.768 41 H 0.239 0.761 42 H 0.181 0.819 43 H 0.199 0.801 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.070 13.547 -15.652 20.927 hybrid contribution -0.465 0.881 -1.741 2.006 sum 2.605 14.428 -17.393 22.748 Atomic orbital electron populations 1.22432 0.99425 1.00698 0.99900 1.20164 0.91588 0.95600 0.86003 0.93407 1.22191 0.93577 1.02189 0.99116 1.21102 0.95307 0.79880 0.99901 0.87842 1.22188 1.01599 1.00165 0.98000 1.45794 1.15873 1.11795 1.60770 1.17775 0.82874 0.85506 0.78913 1.90827 1.51405 1.54531 1.42726 1.21603 0.91219 0.94557 0.94773 1.22225 0.97052 0.96391 0.98226 1.21782 0.99392 0.91783 0.91509 1.21063 0.97452 0.94885 1.05294 1.18049 0.83954 0.85555 0.76847 1.43720 1.19448 1.13681 1.64401 1.90839 1.23072 1.76972 1.50225 1.22887 0.93587 0.91728 0.94586 1.67575 1.33391 1.03593 1.12555 1.42404 1.79161 1.09656 1.06261 1.19949 1.41632 0.94873 0.89168 0.92164 1.25656 0.99516 0.97503 1.01457 1.70875 1.51514 1.08192 1.28364 0.83300 0.75732 0.74373 0.75882 1.21028 1.22443 1.22420 0.92869 0.94547 0.93677 0.90618 0.91734 0.91576 0.92897 0.92411 0.75909 0.82312 0.82688 0.76792 0.76059 0.81908 0.80126 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.49 37.16 0.35 -2.56 16 2 C 0.18 3.38 2.84 -67.93 -0.19 3.19 16 3 H 0.05 0.97 7.56 -51.93 -0.39 0.57 16 4 C -0.13 -2.00 4.29 -26.73 -0.11 -2.11 16 5 C 0.14 2.28 2.52 -67.93 -0.17 2.11 16 6 H 0.10 2.16 7.05 -51.93 -0.37 1.79 16 7 C -0.16 -2.16 9.48 37.16 0.35 -1.80 16 8 N -0.69 -10.53 4.44 -54.59 -0.24 -10.77 16 9 C 0.57 9.56 7.78 -12.10 -0.09 9.47 16 10 O -0.52 -10.61 15.97 5.37 0.09 -10.52 16 11 C 0.12 1.63 6.75 -82.93 -0.56 1.07 16 12 C -0.12 -1.47 9.62 -39.11 -0.38 -1.85 16 13 C -0.02 -0.20 9.71 -38.89 -0.38 -0.57 16 14 C -0.18 -1.75 5.90 -104.73 -0.62 -2.36 16 15 C 0.57 5.32 8.06 -12.26 -0.10 5.22 16 16 N -0.85 -4.10 8.83 30.56 0.27 -3.83 16 17 O -0.53 -7.04 17.25 5.34 0.09 -6.95 16 18 C 0.13 1.17 10.71 -17.17 -0.18 0.98 16 19 N -0.46 -5.41 9.52 -9.48 -0.09 -5.50 16 20 N -0.73 -17.96 4.49 -53.43 -0.24 -18.20 16 21 C -0.33 -9.18 9.93 -15.06 -0.15 -9.33 16 22 H 0.06 1.70 7.83 -52.48 -0.41 1.29 16 23 C -0.04 -1.29 5.50 -17.43 -0.10 -1.39 16 24 N -0.94 -29.64 13.70 55.49 0.76 -28.88 16 25 Si 1.08 26.77 29.92 -169.99 -5.09 21.69 16 26 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.30 -7.02 7.11 56.52 0.40 -6.62 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.41 5.34 7.93 -40.82 -0.32 5.01 16 38 H 0.16 1.94 7.63 -52.48 -0.40 1.54 16 39 H 0.16 1.47 7.73 -52.48 -0.41 1.07 16 40 H 0.40 0.81 6.89 -40.82 -0.28 0.53 16 41 H 0.41 1.46 8.93 -40.82 -0.36 1.10 16 42 H 0.16 0.72 6.41 -52.48 -0.34 0.38 16 43 H 0.37 9.34 6.63 -40.82 -0.27 9.07 16 44 H 0.25 7.85 6.77 -40.82 -0.28 7.57 16 LS Contribution 374.50 15.07 5.64 5.64 Total: -1.00 -37.20 374.50 -7.14 -44.34 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -6.01 Total: 12.92 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -2.33 Total: 0.07 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: 0.46 Total: -67.19 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.18 Total: -17.47 kcal Atomic # 14 Polarization: 26.77 SS G_CDS: -5.09 Total: 21.69 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.20 -7.14 -44.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146722407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.757 kcal (2) G-P(sol) polarization free energy of solvation -37.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds