Wall clock time and date at job start Fri Apr 10 2020 18:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 H 1.08998 * 109.47038 * 305.00130 * 5 4 2 7 7 C 1.53008 * 109.46949 * 185.00342 * 5 4 2 8 8 N 1.46501 * 109.46895 * 65.00576 * 5 4 2 9 9 C 1.36940 * 119.99699 * 204.99678 * 8 5 4 10 10 H 1.08003 * 120.00062 * 0.02562 * 9 8 5 11 11 C 1.38810 * 120.00140 * 179.97438 * 9 8 5 12 12 N 1.31620 * 119.99491 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 120.00156 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47257 * 90.00238 * 13 11 9 15 15 H 1.48503 * 109.47255 * 209.99858 * 13 11 9 16 16 H 1.48495 * 109.47536 * 330.00073 * 13 11 9 17 17 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 18 18 C 1.34778 * 119.99771 * 274.99826 * 17 2 1 19 19 O 1.21490 * 120.00268 * 0.02562 * 18 17 2 20 20 C 1.48342 * 120.00014 * 179.97438 * 18 17 2 21 21 C 1.39299 * 119.57049 * 179.97438 * 20 18 17 22 22 C 1.38449 * 119.18587 * 179.97438 * 21 20 18 23 23 C 1.39863 * 118.36012 * 0.02562 * 22 21 20 24 24 C 1.48012 * 120.46260 * 179.97438 * 23 22 21 25 25 N 1.34773 * 119.99977 * 179.97438 * 24 23 22 26 26 O 1.21534 * 119.99854 * 0.02562 * 24 23 22 27 27 C 1.39721 * 119.07757 * 359.97438 * 23 22 21 28 28 N 1.31424 * 120.71759 * 359.73951 * 27 23 22 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 33 33 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 34 34 H 1.08997 * 109.46840 * 300.00259 * 7 5 4 35 35 H 1.09001 * 109.46854 * 59.99669 * 7 5 4 36 36 H 1.08994 * 109.46921 * 180.02562 * 7 5 4 37 37 H 0.96996 * 120.00242 * 24.99305 * 8 5 4 38 38 H 0.97003 * 119.99576 * 180.02562 * 12 11 9 39 39 H 0.96998 * 120.00630 * 95.00428 * 17 2 1 40 40 H 1.08000 * 120.40544 * 359.95937 * 21 20 18 41 41 H 1.08002 * 120.81826 * 180.02562 * 22 21 20 42 42 H 0.97000 * 120.00310 * 0.02562 * 25 24 23 43 43 H 0.96997 * 119.99894 * 180.02562 * 25 24 23 44 44 H 1.08003 * 119.64551 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.8571 0.4358 -1.2677 7 6 4.0647 -1.2251 -2.6240 8 7 4.1537 -1.3343 -0.1823 9 6 5.3944 -0.9857 0.2808 10 1 5.9386 -0.1790 -0.1877 11 6 5.9521 -1.6683 1.3531 12 7 5.2885 -2.6511 1.9243 13 14 7.6447 -1.1933 1.9843 14 1 7.5070 -0.1553 3.0373 15 1 8.3146 -2.3901 2.5537 16 1 8.4583 -0.6568 0.8638 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8577 1.1604 2.4118 20 6 2.6408 -0.7177 3.5685 21 6 2.7709 -0.0139 4.7636 22 6 3.2321 -0.6747 5.8895 23 6 3.5512 -2.0319 5.7792 24 6 4.0487 -2.7836 6.9531 25 7 4.3530 -4.0914 6.8364 26 8 4.1820 -2.2218 8.0225 27 6 3.3938 -2.6684 4.5453 28 7 2.9476 -2.0071 3.5009 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7715 -1.2055 33 1 1.6055 -0.2618 -2.1369 34 1 3.7724 -2.2741 -2.6698 35 1 3.6265 -0.6887 -3.4656 36 1 5.1509 -1.1485 -2.6696 37 1 3.6647 -2.0585 0.2388 38 1 5.6781 -3.1279 2.6739 39 1 2.2490 -1.6318 1.1527 40 1 2.5154 1.0343 4.8113 41 1 3.3426 -0.1549 6.8297 42 1 4.2463 -4.5399 5.9830 43 1 4.6787 -4.5841 7.6059 44 1 3.6379 -3.7161 4.4497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146722409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:21 Heat of formation + Delta-G solvation = -23.507057 kcal Electronic energy + Delta-G solvation = -28085.934253 eV Core-core repulsion = 24231.717458 eV Total energy + Delta-G solvation = -3854.216795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.43899 -39.32359 -38.24743 -36.73244 -34.19489 -33.85043 -32.59363 -31.95744 -31.17149 -30.21191 -28.50076 -26.34986 -25.22878 -23.64022 -23.25926 -21.89216 -20.65162 -20.21462 -19.70113 -18.14516 -17.49232 -17.16087 -16.90129 -16.04494 -15.38151 -14.87413 -14.85070 -14.75397 -14.46300 -14.35236 -13.82404 -13.69181 -13.42920 -13.15263 -12.87424 -12.75166 -12.55755 -12.35255 -12.12394 -11.86786 -11.73595 -11.65809 -11.01601 -10.85667 -10.73438 -10.38573 -10.26182 -10.25327 -9.90767 -9.75473 -9.72801 -9.62665 -9.58966 -8.94964 -8.94151 -8.89020 -8.34732 -6.90275 -5.74847 -2.99505 0.62254 1.59475 2.76219 3.40001 3.44453 3.45495 3.48233 3.48983 3.69528 4.35223 4.55040 4.58949 4.95400 5.02513 5.06698 5.15829 5.27323 5.41672 5.51697 5.56693 5.58334 5.68602 5.88508 5.93079 5.96859 6.01252 6.13696 6.18813 6.23387 6.26802 6.36392 6.42616 6.55402 6.61668 6.71426 6.79777 6.86194 7.05558 7.15224 7.28010 7.71558 8.03165 8.20998 8.33385 8.40635 8.82885 9.52719 10.07860 10.43859 11.43124 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011630 B = 0.005464 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.968687 B = 5123.661443 C = 6651.178471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.084 0.916 4 C -0.133 4.133 5 C 0.168 3.832 6 H 0.047 0.953 7 C -0.163 4.163 8 N -0.714 5.714 9 C -0.229 4.229 10 H 0.064 0.936 11 C -0.006 4.006 12 N -0.904 5.904 13 Si 0.889 3.111 14 H -0.294 1.294 15 H -0.294 1.294 16 H -0.285 1.285 17 N -0.673 5.673 18 C 0.579 3.421 19 O -0.556 6.556 20 C 0.118 3.882 21 C -0.134 4.134 22 C -0.031 4.031 23 C -0.194 4.194 24 C 0.574 3.426 25 N -0.849 5.849 26 O -0.547 6.547 27 C 0.154 3.846 28 N -0.398 5.398 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.034 0.966 36 H 0.052 0.948 37 H 0.381 0.619 38 H 0.247 0.753 39 H 0.416 0.584 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.405 0.595 43 H 0.404 0.596 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.516 -2.734 1.416 9.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.102 0.898 4 C -0.172 4.172 5 C 0.058 3.942 6 H 0.065 0.935 7 C -0.223 4.223 8 N -0.357 5.357 9 C -0.360 4.360 10 H 0.082 0.918 11 C -0.203 4.203 12 N -0.552 5.552 13 Si 0.721 3.279 14 H -0.222 1.222 15 H -0.220 1.220 16 H -0.211 1.211 17 N -0.324 5.324 18 C 0.363 3.637 19 O -0.435 6.435 20 C -0.021 4.021 21 C -0.155 4.155 22 C -0.057 4.057 23 C -0.200 4.200 24 C 0.360 3.640 25 N -0.413 5.413 26 O -0.425 6.425 27 C -0.008 4.008 28 N -0.108 5.108 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.217 0.783 38 H 0.057 0.943 39 H 0.256 0.744 40 H 0.165 0.835 41 H 0.162 0.838 42 H 0.235 0.765 43 H 0.234 0.766 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.648 -1.756 1.209 8.907 hybrid contribution 1.608 -0.510 1.127 2.028 sum -7.040 -2.266 2.336 7.756 Atomic orbital electron populations 1.22206 0.96106 1.01749 1.01996 1.20884 0.92630 0.97774 0.84531 0.89801 1.22211 0.97864 1.00670 0.96442 1.20287 0.89669 0.95876 0.88334 0.93540 1.22417 1.01488 1.00337 0.98059 1.42467 1.18653 1.40043 1.34576 1.19114 0.93244 1.13032 1.10644 0.91808 1.24553 0.97741 0.98958 0.99023 1.69711 1.36680 1.23804 1.24960 0.86469 0.85413 0.77200 0.78820 1.22174 1.22014 1.21052 1.45840 1.63594 1.15088 1.07906 1.17737 0.77281 0.85692 0.82969 1.90697 1.52236 1.15334 1.85256 1.21391 0.96121 0.90969 0.93655 1.22028 0.99446 1.01893 0.92150 1.21538 0.92629 0.92582 0.98964 1.21016 1.07119 0.96177 0.95656 1.18154 0.76299 0.81923 0.87660 1.43732 1.69884 1.11001 1.16650 1.90782 1.53934 1.68939 1.28843 1.22774 0.92146 0.99733 0.86097 1.67672 1.07018 1.07255 1.28853 0.92382 0.92028 0.92701 0.91643 0.90761 0.93611 0.94655 0.92926 0.78335 0.94292 0.74400 0.83534 0.83758 0.76523 0.76561 0.82555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.48 37.16 0.35 -1.76 16 2 C 0.15 2.31 2.57 -67.93 -0.17 2.13 16 3 H 0.08 1.49 7.58 -51.93 -0.39 1.09 16 4 C -0.13 -1.94 4.43 -26.73 -0.12 -2.06 16 5 C 0.17 3.06 2.89 -67.92 -0.20 2.86 16 6 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 7 C -0.16 -2.73 9.49 37.16 0.35 -2.38 16 8 N -0.71 -15.69 3.84 -53.42 -0.21 -15.89 16 9 C -0.23 -5.84 9.93 -15.06 -0.15 -5.99 16 10 H 0.06 1.68 7.83 -52.48 -0.41 1.27 16 11 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 12 N -0.90 -22.69 11.99 55.49 0.67 -22.02 16 13 Si 0.89 21.71 29.55 -169.99 -5.02 16.69 16 14 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 N -0.67 -12.09 3.79 -54.59 -0.21 -12.29 16 18 C 0.58 11.49 7.78 -12.10 -0.09 11.39 16 19 O -0.56 -11.94 15.97 5.37 0.09 -11.85 16 20 C 0.12 2.24 6.75 -82.93 -0.56 1.68 16 21 C -0.13 -2.30 9.62 -39.11 -0.38 -2.67 16 22 C -0.03 -0.49 9.71 -38.90 -0.38 -0.86 16 23 C -0.19 -3.03 5.90 -104.73 -0.62 -3.64 16 24 C 0.57 8.45 8.06 -12.25 -0.10 8.35 16 25 N -0.85 -8.77 8.83 30.57 0.27 -8.50 16 26 O -0.55 -9.74 17.25 5.34 0.09 -9.65 16 27 C 0.15 2.45 10.64 -17.17 -0.18 2.27 16 28 N -0.40 -7.31 8.52 -9.48 -0.08 -7.39 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.38 8.61 5.70 -40.82 -0.23 8.38 16 38 H 0.25 6.14 8.31 -40.82 -0.34 5.80 16 39 H 0.42 7.75 5.83 -40.82 -0.24 7.51 16 40 H 0.15 2.35 7.63 -52.49 -0.40 1.95 16 41 H 0.14 2.07 7.73 -52.49 -0.41 1.67 16 42 H 0.40 3.38 6.89 -40.82 -0.28 3.10 16 43 H 0.40 3.41 8.93 -40.82 -0.36 3.04 16 44 H 0.16 2.05 6.41 -52.48 -0.34 1.71 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -30.73 369.87 -7.17 -37.90 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: -6.00 Total: 18.39 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -2.34 Total: 9.06 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: 0.44 Total: -66.10 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: 0.18 Total: -21.50 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.73 -7.17 -37.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146722409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.389 kcal (2) G-P(sol) polarization free energy of solvation -30.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds