Wall clock time and date at job start Fri Apr 10 2020 18:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 H 1.08998 * 109.47038 * 305.00130 * 5 4 2 7 7 C 1.53008 * 109.46949 * 185.00342 * 5 4 2 8 8 N 1.46501 * 109.46895 * 65.00576 * 5 4 2 9 9 C 1.36940 * 119.99699 * 204.99678 * 8 5 4 10 10 H 1.08003 * 120.00062 * 0.02562 * 9 8 5 11 11 C 1.38810 * 120.00140 * 179.97438 * 9 8 5 12 12 N 1.31620 * 119.99491 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 120.00156 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47257 * 90.00238 * 13 11 9 15 15 H 1.48503 * 109.47255 * 209.99858 * 13 11 9 16 16 H 1.48495 * 109.47536 * 330.00073 * 13 11 9 17 17 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 18 18 C 1.34778 * 119.99771 * 274.99826 * 17 2 1 19 19 O 1.21490 * 120.00268 * 0.02562 * 18 17 2 20 20 C 1.48342 * 120.00014 * 179.97438 * 18 17 2 21 21 C 1.39299 * 119.57049 * 179.97438 * 20 18 17 22 22 C 1.38449 * 119.18587 * 179.97438 * 21 20 18 23 23 C 1.39863 * 118.36012 * 0.02562 * 22 21 20 24 24 C 1.48012 * 120.46260 * 179.97438 * 23 22 21 25 25 N 1.34773 * 119.99977 * 179.97438 * 24 23 22 26 26 O 1.21534 * 119.99854 * 0.02562 * 24 23 22 27 27 C 1.39721 * 119.07757 * 359.97438 * 23 22 21 28 28 N 1.31424 * 120.71759 * 359.73951 * 27 23 22 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 33 33 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 34 34 H 1.08997 * 109.46840 * 300.00259 * 7 5 4 35 35 H 1.09001 * 109.46854 * 59.99669 * 7 5 4 36 36 H 1.08994 * 109.46921 * 180.02562 * 7 5 4 37 37 H 0.96996 * 120.00242 * 24.99305 * 8 5 4 38 38 H 0.97003 * 119.99576 * 180.02562 * 12 11 9 39 39 H 0.96998 * 120.00630 * 95.00428 * 17 2 1 40 40 H 1.08000 * 120.40544 * 359.95937 * 21 20 18 41 41 H 1.08002 * 120.81826 * 180.02562 * 22 21 20 42 42 H 0.97000 * 120.00310 * 0.02562 * 25 24 23 43 43 H 0.96997 * 119.99894 * 180.02562 * 25 24 23 44 44 H 1.08003 * 119.64551 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.8571 0.4358 -1.2677 7 6 4.0647 -1.2251 -2.6240 8 7 4.1537 -1.3343 -0.1823 9 6 5.3944 -0.9857 0.2808 10 1 5.9386 -0.1790 -0.1877 11 6 5.9521 -1.6683 1.3531 12 7 5.2885 -2.6511 1.9243 13 14 7.6447 -1.1933 1.9843 14 1 7.5070 -0.1553 3.0373 15 1 8.3146 -2.3901 2.5537 16 1 8.4583 -0.6568 0.8638 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8577 1.1604 2.4118 20 6 2.6408 -0.7177 3.5685 21 6 2.7709 -0.0139 4.7636 22 6 3.2321 -0.6747 5.8895 23 6 3.5512 -2.0319 5.7792 24 6 4.0487 -2.7836 6.9531 25 7 4.3530 -4.0914 6.8364 26 8 4.1820 -2.2218 8.0225 27 6 3.3938 -2.6684 4.5453 28 7 2.9476 -2.0071 3.5009 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7715 -1.2055 33 1 1.6055 -0.2618 -2.1369 34 1 3.7724 -2.2741 -2.6698 35 1 3.6265 -0.6887 -3.4656 36 1 5.1509 -1.1485 -2.6696 37 1 3.6647 -2.0585 0.2388 38 1 5.6781 -3.1279 2.6739 39 1 2.2490 -1.6318 1.1527 40 1 2.5154 1.0343 4.8113 41 1 3.3426 -0.1549 6.8297 42 1 4.2463 -4.5399 5.9830 43 1 4.6787 -4.5841 7.6059 44 1 3.6379 -3.7161 4.4497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146722409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:20 Heat of formation + Delta-G solvation = -45.750417 kcal Electronic energy + Delta-G solvation = -28086.898797 eV Core-core repulsion = 24231.717458 eV Total energy + Delta-G solvation = -3855.181340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.75991 -40.66528 -39.55069 -38.21823 -35.75506 -34.95530 -34.11844 -33.46223 -32.52350 -31.58555 -30.11576 -27.57271 -26.54117 -25.47277 -24.56107 -23.17766 -21.89165 -21.63570 -21.13352 -19.32403 -19.02401 -18.75980 -18.13915 -17.36552 -16.77204 -16.45683 -16.18492 -16.09490 -15.81147 -15.69797 -15.50459 -15.28172 -14.79115 -14.46568 -14.21668 -14.10751 -13.97153 -13.67271 -13.50288 -13.27529 -13.15547 -12.90419 -12.77069 -12.57673 -12.25793 -12.11672 -11.69193 -11.53099 -11.51197 -11.36696 -11.16301 -10.95965 -10.79778 -10.75765 -10.30491 -10.24037 -9.77706 -8.69691 -7.70444 -4.92670 -0.69935 0.29305 1.41402 1.45829 1.46876 1.49594 2.08579 2.31246 2.44297 2.62807 2.99920 3.26419 3.57584 3.74221 3.75430 3.85198 3.92041 4.02071 4.11020 4.21891 4.22263 4.42487 4.60837 4.66941 4.73034 4.87094 4.90932 4.92450 4.93982 4.98168 5.12288 5.17718 5.20471 5.39890 5.46303 5.48567 5.66613 5.68891 5.77912 5.81583 6.29882 6.48093 6.61687 6.94539 7.19312 7.35350 7.57428 8.29120 8.57840 9.46506 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011630 B = 0.005464 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.968687 B = 5123.661443 C = 6651.178471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.141 3.859 3 H 0.059 0.941 4 C -0.119 4.119 5 C 0.161 3.839 6 H 0.026 0.974 7 C -0.153 4.153 8 N -0.716 5.716 9 C -0.238 4.238 10 H 0.046 0.954 11 C -0.036 4.036 12 N -0.902 5.902 13 Si 0.922 3.078 14 H -0.311 1.311 15 H -0.292 1.292 16 H -0.289 1.289 17 N -0.667 5.667 18 C 0.569 3.431 19 O -0.584 6.584 20 C 0.094 3.906 21 C -0.138 4.138 22 C -0.032 4.032 23 C -0.188 4.188 24 C 0.574 3.426 25 N -0.823 5.823 26 O -0.580 6.580 27 C 0.150 3.850 28 N -0.413 5.413 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.026 0.974 37 H 0.378 0.622 38 H 0.246 0.754 39 H 0.414 0.586 40 H 0.151 0.849 41 H 0.159 0.841 42 H 0.417 0.583 43 H 0.417 0.583 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.468 -4.154 0.798 10.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.037 3.963 3 H 0.078 0.922 4 C -0.157 4.157 5 C 0.053 3.947 6 H 0.044 0.956 7 C -0.212 4.212 8 N -0.360 5.360 9 C -0.371 4.371 10 H 0.064 0.936 11 C -0.232 4.232 12 N -0.550 5.550 13 Si 0.756 3.244 14 H -0.240 1.240 15 H -0.219 1.219 16 H -0.215 1.215 17 N -0.317 5.317 18 C 0.354 3.646 19 O -0.465 6.465 20 C -0.044 4.044 21 C -0.159 4.159 22 C -0.058 4.058 23 C -0.194 4.194 24 C 0.359 3.641 25 N -0.388 5.388 26 O -0.461 6.461 27 C -0.012 4.012 28 N -0.123 5.123 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.213 0.787 38 H 0.056 0.944 39 H 0.253 0.747 40 H 0.168 0.832 41 H 0.176 0.824 42 H 0.249 0.751 43 H 0.250 0.750 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -9.609 -3.227 0.545 10.151 hybrid contribution 1.904 -0.080 1.345 2.333 sum -7.705 -3.307 1.890 8.596 Atomic orbital electron populations 1.22106 0.93552 1.02789 1.02501 1.21067 0.94568 0.96410 0.84252 0.92245 1.22127 0.94901 1.01556 0.97147 1.20481 0.92116 0.94343 0.87803 0.95588 1.22265 0.99928 1.00833 0.98222 1.42451 1.17630 1.40251 1.35678 1.19103 0.94640 1.12548 1.10760 0.93577 1.24856 0.98952 0.99740 0.99687 1.69733 1.36555 1.23724 1.24993 0.85965 0.84391 0.76344 0.77728 1.24010 1.21877 1.21480 1.45914 1.62800 1.14836 1.08119 1.18024 0.77190 0.85577 0.83833 1.90663 1.53680 1.16344 1.85806 1.21442 0.97449 0.91646 0.93901 1.22126 0.99479 1.02190 0.92117 1.21749 0.91993 0.93005 0.99068 1.21211 1.05962 0.96177 0.96050 1.18032 0.76351 0.82987 0.86686 1.43535 1.67881 1.09495 1.17873 1.90776 1.55668 1.69928 1.29758 1.23226 0.91496 1.00833 0.85619 1.67643 1.07665 1.07075 1.29912 0.94099 0.89315 0.91324 0.90514 0.87201 0.93282 0.91393 0.95459 0.78682 0.94379 0.74689 0.83168 0.82361 0.75052 0.75013 0.79812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.48 71.98 0.68 -2.95 16 2 C 0.14 4.30 2.57 44.99 0.12 4.41 16 3 H 0.06 2.11 7.58 -2.39 -0.02 2.10 16 4 C -0.12 -3.18 4.43 30.60 0.14 -3.04 16 5 C 0.16 5.70 2.89 45.00 0.13 5.83 16 6 H 0.03 1.03 8.08 -2.39 -0.02 1.01 16 7 C -0.15 -4.84 9.49 71.98 0.68 -4.16 16 8 N -0.72 -31.36 3.84 -322.92 -1.24 -32.60 16 9 C -0.24 -12.27 9.93 84.03 0.83 -11.44 16 10 H 0.05 2.50 7.83 -2.91 -0.02 2.47 16 11 C -0.04 -1.86 5.50 84.86 0.47 -1.40 16 12 N -0.90 -44.68 11.99 21.65 0.26 -44.42 16 13 Si 0.92 44.76 29.55 68.60 2.03 46.79 16 14 H -0.31 -15.86 7.11 99.48 0.71 -15.16 16 15 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 16 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 17 N -0.67 -23.89 3.79 -444.93 -1.69 -25.58 16 18 C 0.57 23.01 7.78 86.93 0.68 23.69 16 19 O -0.58 -25.79 15.97 -3.68 -0.06 -25.85 16 20 C 0.09 3.60 6.75 41.96 0.28 3.89 16 21 C -0.14 -4.78 9.62 22.58 0.22 -4.56 16 22 C -0.03 -0.99 9.71 22.71 0.22 -0.77 16 23 C -0.19 -5.65 5.90 -19.93 -0.12 -5.77 16 24 C 0.57 15.90 8.06 86.84 0.70 16.60 16 25 N -0.82 -14.88 8.83 -175.49 -1.55 -16.43 16 26 O -0.58 -19.94 17.25 -3.82 -0.07 -20.01 16 27 C 0.15 4.57 10.64 85.11 0.91 5.47 16 28 N -0.41 -14.99 8.52 -183.90 -1.57 -16.55 16 29 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.38 16.88 5.70 -92.71 -0.53 16.35 16 38 H 0.25 11.96 8.31 -92.71 -0.77 11.18 16 39 H 0.41 15.24 5.83 -92.71 -0.54 14.70 16 40 H 0.15 4.96 7.63 -2.91 -0.02 4.93 16 41 H 0.16 4.45 7.73 -2.91 -0.02 4.43 16 42 H 0.42 5.70 6.89 -92.71 -0.64 5.06 16 43 H 0.42 5.88 8.93 -92.71 -0.83 5.06 16 44 H 0.19 4.37 6.41 -2.91 -0.02 4.35 16 Total: -1.00 -67.17 369.87 0.59 -66.59 By element: Atomic # 1 Polarization: 43.73 SS G_CDS: -1.47 Total: 42.26 kcal Atomic # 6 Polarization: 19.87 SS G_CDS: 5.93 Total: 25.81 kcal Atomic # 7 Polarization: -129.80 SS G_CDS: -5.78 Total: -135.58 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -0.12 Total: -45.86 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -67.17 0.59 -66.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146722409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.835 kcal (2) G-P(sol) polarization free energy of solvation -67.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds