Wall clock time and date at job start Fri Apr 10 2020 18:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21527 * 120.00431 * 0.02562 * 9 8 5 11 11 C 1.48012 * 119.99903 * 180.02562 * 9 8 5 12 12 C 1.39867 * 120.46164 * 180.02562 * 11 9 8 13 13 C 1.38454 * 118.35440 * 179.97438 * 12 11 9 14 14 C 1.39299 * 119.19243 * 359.97438 * 13 12 11 15 15 C 1.48333 * 119.57251 * 179.97438 * 14 13 12 16 16 N 1.34775 * 119.99875 * 180.02562 * 15 14 13 17 17 O 1.21495 * 119.99797 * 359.97438 * 15 14 13 18 18 N 1.32715 * 120.85671 * 0.02562 * 14 13 12 19 19 C 1.31426 * 121.79985 * 359.72271 * 18 14 13 20 20 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 31 31 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 33 33 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 34 34 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 35 35 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 36 36 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 37 37 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 38 38 H 1.07993 * 120.82115 * 359.97438 * 12 11 9 39 39 H 1.08004 * 120.40339 * 179.97438 * 13 12 11 40 40 H 0.96996 * 120.00527 * 359.97438 * 16 15 14 41 41 H 0.97000 * 119.99636 * 180.02562 * 16 15 14 42 42 H 1.07997 * 119.63662 * 180.26201 * 19 18 14 43 43 H 0.97004 * 119.99747 * 95.00774 * 20 2 1 44 44 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9375 0.4325 -0.5728 11 6 5.5480 2.6310 -1.2666 12 6 6.8047 3.0814 -0.8496 13 6 7.1213 4.4158 -1.0396 14 6 6.1853 5.2580 -1.6356 15 6 6.5154 6.6892 -1.8427 16 7 5.6161 7.5117 -2.4180 17 8 7.5962 7.1201 -1.4930 18 7 5.0016 4.7966 -2.0194 19 6 4.6650 3.5361 -1.8610 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6617 3.5091 24 7 2.9205 -1.9400 3.4511 25 14 2.7899 0.2699 5.1184 26 1 3.2931 -0.6500 6.1700 27 1 3.7495 1.3891 4.9391 28 1 1.4684 0.8113 5.5254 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 3.6547 -1.0591 -3.4193 35 1 5.1716 -1.3615 -2.5380 36 1 3.8002 -2.4818 -2.3594 37 1 3.3284 1.4130 -1.9027 38 1 7.5106 2.4051 -0.3907 39 1 8.0823 4.7991 -0.7297 40 1 4.7530 7.1679 -2.6969 41 1 5.8321 8.4476 -2.5538 42 1 3.6939 3.1973 -2.1902 43 1 2.2490 -1.6318 1.1526 44 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146780576.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:30 Heat of formation + Delta-G solvation = -34.317269 kcal Electronic energy + Delta-G solvation = -26787.923611 eV Core-core repulsion = 22933.238049 eV Total energy + Delta-G solvation = -3854.685561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.09393 -39.77712 -38.73365 -37.00082 -34.76490 -34.20409 -32.72181 -32.66198 -31.94676 -30.36275 -28.34416 -26.47863 -25.82517 -23.94920 -23.45380 -22.24743 -21.20159 -20.53111 -19.97669 -18.69755 -18.00681 -17.43050 -17.32474 -16.54475 -15.71935 -15.49001 -15.34245 -15.04362 -14.92302 -14.62406 -14.21830 -13.96395 -13.64034 -13.56901 -13.44828 -13.26386 -13.03701 -12.88516 -12.22504 -12.15705 -11.75892 -11.75648 -11.10349 -10.82597 -10.75992 -10.54574 -10.50907 -10.28657 -10.26456 -10.15556 -10.07530 -9.94853 -9.71358 -9.57087 -9.14389 -8.91956 -8.88469 -7.00788 -6.05996 -3.05897 -0.01173 0.84656 2.17320 2.96648 2.99222 3.13614 3.53087 3.57005 3.64453 3.74004 3.76022 4.41981 4.44441 4.61444 4.67776 4.70021 4.84990 4.98476 5.24173 5.27819 5.33181 5.53862 5.62031 5.63941 5.73198 5.74798 5.80575 5.87680 5.99028 6.09021 6.16138 6.22349 6.30991 6.36186 6.41910 6.51590 6.63468 6.78743 6.87518 6.96384 7.28781 7.53720 7.82596 7.84258 8.25628 8.79235 9.25783 10.11900 10.26192 11.42374 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011142 B = 0.003582 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.487584 B = 7815.539597 C = 8856.978296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.177 3.823 3 H 0.046 0.954 4 C -0.133 4.133 5 C 0.144 3.856 6 H 0.104 0.896 7 C -0.162 4.162 8 N -0.707 5.707 9 C 0.560 3.440 10 O -0.519 6.519 11 C -0.150 4.150 12 C -0.022 4.022 13 C -0.114 4.114 14 C 0.086 3.914 15 C 0.579 3.421 16 N -0.834 5.834 17 O -0.534 6.534 18 N -0.462 5.462 19 C 0.131 3.869 20 N -0.731 5.731 21 C -0.327 4.327 22 H 0.061 0.939 23 C -0.043 4.043 24 N -0.943 5.943 25 Si 1.075 2.925 26 H -0.285 1.285 27 H -0.296 1.296 28 H -0.296 1.296 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.394 0.606 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.413 0.587 41 H 0.406 0.594 42 H 0.167 0.833 43 H 0.366 0.634 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.733 12.539 -17.460 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 H 0.064 0.936 4 C -0.172 4.172 5 C 0.041 3.959 6 H 0.122 0.878 7 C -0.220 4.220 8 N -0.358 5.358 9 C 0.345 3.655 10 O -0.395 6.395 11 C -0.155 4.155 12 C -0.049 4.049 13 C -0.135 4.135 14 C -0.052 4.052 15 C 0.362 3.638 16 N -0.398 5.398 17 O -0.409 6.409 18 N -0.173 5.173 19 C -0.030 4.030 20 N -0.375 5.375 21 C -0.458 4.458 22 H 0.079 0.921 23 C -0.240 4.240 24 N -0.588 5.588 25 Si 0.907 3.093 26 H -0.210 1.210 27 H -0.224 1.224 28 H -0.224 1.224 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.229 0.771 38 H 0.176 0.824 39 H 0.174 0.826 40 H 0.243 0.757 41 H 0.237 0.763 42 H 0.184 0.816 43 H 0.199 0.801 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.855 12.763 -15.541 20.312 hybrid contribution -0.728 -0.158 -1.593 1.759 sum 2.127 12.605 -17.135 21.378 Atomic orbital electron populations 1.22443 0.99398 1.00779 0.99928 1.20158 0.91621 0.95470 0.86068 0.93570 1.22209 0.93564 1.02355 0.99063 1.21077 0.95239 0.79638 0.99979 0.87758 1.22190 1.01643 1.00225 0.97935 1.45871 1.15924 1.11984 1.62065 1.17911 0.82514 0.86496 0.78619 1.90822 1.51027 1.55485 1.42199 1.21358 0.96555 0.95819 1.01799 1.21853 0.95177 0.95173 0.92685 1.22143 1.01195 0.93023 0.97123 1.21201 0.91103 0.94679 0.98235 1.17876 0.83900 0.84851 0.77159 1.43628 1.19906 1.13104 1.63121 1.90842 1.23107 1.76289 1.50691 1.67478 1.16969 1.16097 1.16754 1.22906 0.98820 0.87635 0.93626 1.42401 1.79146 1.09674 1.06243 1.19940 1.41823 0.94887 0.89168 0.92127 1.25662 0.99415 0.97478 1.01480 1.70880 1.51376 1.08201 1.28368 0.83305 0.75765 0.74392 0.75872 1.21012 1.22403 1.22383 0.93635 0.92817 0.94554 0.90542 0.91751 0.92906 0.92379 0.91565 0.77148 0.82419 0.82624 0.75672 0.76332 0.81633 0.80104 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.49 37.16 0.35 -2.44 16 2 C 0.18 3.20 2.84 -67.93 -0.19 3.01 16 3 H 0.05 0.86 7.56 -51.93 -0.39 0.47 16 4 C -0.13 -1.87 4.29 -26.73 -0.11 -1.98 16 5 C 0.14 2.15 2.52 -67.93 -0.17 1.98 16 6 H 0.10 2.08 7.05 -51.93 -0.37 1.72 16 7 C -0.16 -2.01 9.48 37.16 0.35 -1.66 16 8 N -0.71 -9.37 4.40 -54.69 -0.24 -9.61 16 9 C 0.56 8.62 7.75 -12.25 -0.09 8.52 16 10 O -0.52 -10.22 16.07 5.34 0.09 -10.14 16 11 C -0.15 -1.88 5.90 -104.73 -0.62 -2.50 16 12 C -0.02 -0.27 9.71 -38.89 -0.38 -0.65 16 13 C -0.11 -1.26 9.62 -39.11 -0.38 -1.64 16 14 C 0.09 0.96 6.75 -82.94 -0.56 0.40 16 15 C 0.58 6.29 8.09 -12.11 -0.10 6.19 16 16 N -0.83 -5.87 8.86 30.64 0.27 -5.60 16 17 O -0.53 -7.38 17.15 5.37 0.09 -7.29 16 18 N -0.46 -4.79 9.52 -9.48 -0.09 -4.88 16 19 C 0.13 1.34 10.71 -17.17 -0.18 1.16 16 20 N -0.73 -17.42 4.49 -53.43 -0.24 -17.66 16 21 C -0.33 -9.04 9.93 -15.06 -0.15 -9.19 16 22 H 0.06 1.67 7.83 -52.48 -0.41 1.26 16 23 C -0.04 -1.24 5.50 -17.43 -0.10 -1.34 16 24 N -0.94 -29.27 13.70 55.49 0.76 -28.51 16 25 Si 1.08 26.46 29.92 -169.99 -5.09 21.37 16 26 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 27 H -0.30 -7.08 7.11 56.52 0.40 -6.67 16 28 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.39 3.90 6.66 -40.82 -0.27 3.63 16 38 H 0.16 1.85 7.73 -52.49 -0.41 1.45 16 39 H 0.16 1.55 7.63 -52.48 -0.40 1.15 16 40 H 0.41 2.32 8.15 -40.82 -0.33 1.98 16 41 H 0.41 2.08 8.93 -40.82 -0.36 1.71 16 42 H 0.17 1.20 6.41 -52.49 -0.34 0.86 16 43 H 0.37 9.12 6.63 -40.82 -0.27 8.85 16 44 H 0.25 7.75 6.77 -40.82 -0.28 7.47 16 LS Contribution 374.50 15.07 5.64 5.64 Total: -1.00 -36.25 374.50 -7.14 -43.39 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -6.01 Total: 13.42 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -2.33 Total: -0.14 kcal Atomic # 7 Polarization: -66.72 SS G_CDS: 0.46 Total: -66.26 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.18 Total: -17.43 kcal Atomic # 14 Polarization: 26.46 SS G_CDS: -5.09 Total: 21.37 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.25 -7.14 -43.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146780576.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.073 kcal (2) G-P(sol) polarization free energy of solvation -36.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds