Wall clock time and date at job start Fri Apr 10 2020 18:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21527 * 120.00431 * 0.02562 * 9 8 5 11 11 C 1.48012 * 119.99903 * 180.02562 * 9 8 5 12 12 C 1.39867 * 120.46164 * 180.02562 * 11 9 8 13 13 C 1.38454 * 118.35440 * 179.97438 * 12 11 9 14 14 C 1.39299 * 119.19243 * 359.97438 * 13 12 11 15 15 C 1.48333 * 119.57251 * 179.97438 * 14 13 12 16 16 N 1.34775 * 119.99875 * 180.02562 * 15 14 13 17 17 O 1.21495 * 119.99797 * 359.97438 * 15 14 13 18 18 N 1.32715 * 120.85671 * 0.02562 * 14 13 12 19 19 C 1.31426 * 121.79985 * 359.72271 * 18 14 13 20 20 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 31 31 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 33 33 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 34 34 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 35 35 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 36 36 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 37 37 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 38 38 H 1.07993 * 120.82115 * 359.97438 * 12 11 9 39 39 H 1.08004 * 120.40339 * 179.97438 * 13 12 11 40 40 H 0.96996 * 120.00527 * 359.97438 * 16 15 14 41 41 H 0.97000 * 119.99636 * 180.02562 * 16 15 14 42 42 H 1.07997 * 119.63662 * 180.26201 * 19 18 14 43 43 H 0.97004 * 119.99747 * 95.00774 * 20 2 1 44 44 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9375 0.4325 -0.5728 11 6 5.5480 2.6310 -1.2666 12 6 6.8047 3.0814 -0.8496 13 6 7.1213 4.4158 -1.0396 14 6 6.1853 5.2580 -1.6356 15 6 6.5154 6.6892 -1.8427 16 7 5.6161 7.5117 -2.4180 17 8 7.5962 7.1201 -1.4930 18 7 5.0016 4.7966 -2.0194 19 6 4.6650 3.5361 -1.8610 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6617 3.5091 24 7 2.9205 -1.9400 3.4511 25 14 2.7899 0.2699 5.1184 26 1 3.2931 -0.6500 6.1700 27 1 3.7495 1.3891 4.9391 28 1 1.4684 0.8113 5.5254 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 3.6547 -1.0591 -3.4193 35 1 5.1716 -1.3615 -2.5380 36 1 3.8002 -2.4818 -2.3594 37 1 3.3284 1.4130 -1.9027 38 1 7.5106 2.4051 -0.3907 39 1 8.0823 4.7991 -0.7297 40 1 4.7530 7.1679 -2.6969 41 1 5.8321 8.4476 -2.5538 42 1 3.6939 3.1973 -2.1902 43 1 2.2490 -1.6318 1.1526 44 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146780576.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:29 Heat of formation + Delta-G solvation = -63.473494 kcal Electronic energy + Delta-G solvation = -26789.187920 eV Core-core repulsion = 22933.238049 eV Total energy + Delta-G solvation = -3855.949870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.03304 -40.85474 -39.69887 -38.42774 -36.33088 -35.01016 -34.28874 -33.58719 -33.18154 -31.48411 -30.14829 -27.66588 -26.79412 -25.53264 -24.82177 -23.30240 -22.27038 -21.67893 -21.37409 -19.61455 -19.42556 -18.89954 -18.30198 -17.48835 -16.81926 -16.70028 -16.42723 -16.24708 -16.06909 -15.87362 -15.69926 -15.45230 -14.98408 -14.70206 -14.59637 -14.34445 -14.30731 -13.87158 -13.54009 -13.43888 -13.13892 -12.91251 -12.77289 -12.53102 -12.19853 -11.91861 -11.86552 -11.71376 -11.56199 -11.39669 -11.19271 -11.16870 -10.89845 -10.81908 -10.76058 -10.49393 -10.08241 -9.03920 -8.33270 -5.24947 -0.95166 -0.03163 1.24046 1.53354 1.63297 1.78743 1.92453 2.03481 2.20283 2.70092 2.71248 2.97316 3.45125 3.48392 3.61282 3.70136 3.76650 3.77899 3.89505 3.95748 4.06411 4.31725 4.46216 4.48282 4.62589 4.74161 4.75029 4.78378 4.82933 4.86839 4.97852 5.04616 5.17572 5.20662 5.29190 5.34991 5.51835 5.56744 5.65644 5.73097 6.15079 6.43998 6.48805 6.55352 7.13977 7.14810 7.17511 8.08167 8.18508 9.19207 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011142 B = 0.003582 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.487584 B = 7815.539597 C = 8856.978296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.167 3.833 3 H 0.044 0.956 4 C -0.120 4.120 5 C 0.147 3.853 6 H 0.045 0.955 7 C -0.152 4.152 8 N -0.693 5.693 9 C 0.556 3.444 10 O -0.575 6.575 11 C -0.165 4.165 12 C -0.029 4.029 13 C -0.117 4.117 14 C 0.084 3.916 15 C 0.577 3.423 16 N -0.811 5.811 17 O -0.569 6.569 18 N -0.453 5.453 19 C 0.144 3.856 20 N -0.744 5.744 21 C -0.314 4.314 22 H 0.061 0.939 23 C -0.108 4.108 24 N -0.980 5.980 25 Si 1.117 2.883 26 H -0.295 1.295 27 H -0.287 1.287 28 H -0.275 1.275 29 H 0.040 0.960 30 H 0.026 0.974 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.038 0.962 36 H 0.070 0.930 37 H 0.413 0.587 38 H 0.151 0.849 39 H 0.163 0.837 40 H 0.423 0.577 41 H 0.417 0.583 42 H 0.201 0.799 43 H 0.356 0.644 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.318 14.677 -19.891 24.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.060 3.940 3 H 0.062 0.938 4 C -0.158 4.158 5 C 0.042 3.958 6 H 0.064 0.936 7 C -0.210 4.210 8 N -0.345 5.345 9 C 0.342 3.658 10 O -0.455 6.455 11 C -0.171 4.171 12 C -0.055 4.055 13 C -0.137 4.137 14 C -0.053 4.053 15 C 0.360 3.640 16 N -0.375 5.375 17 O -0.448 6.448 18 N -0.164 5.164 19 C -0.017 4.017 20 N -0.386 5.386 21 C -0.446 4.446 22 H 0.079 0.921 23 C -0.299 4.299 24 N -0.629 5.629 25 Si 0.944 3.056 26 H -0.221 1.221 27 H -0.213 1.213 28 H -0.201 1.201 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.132 0.868 34 H 0.105 0.895 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.252 0.748 38 H 0.168 0.832 39 H 0.180 0.820 40 H 0.255 0.745 41 H 0.250 0.750 42 H 0.218 0.782 43 H 0.188 0.812 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.704 14.976 -18.064 23.475 hybrid contribution -0.147 -0.740 -0.954 1.216 sum 0.557 14.236 -19.017 23.762 Atomic orbital electron populations 1.22302 0.97727 1.00782 1.00807 1.20491 0.92587 0.95293 0.85666 0.93759 1.22120 0.92556 1.02415 0.98684 1.20890 0.95743 0.80613 0.98534 0.93620 1.22094 1.00518 1.00258 0.98146 1.45730 1.15618 1.11870 1.61255 1.18358 0.82472 0.87278 0.77670 1.90797 1.52712 1.57161 1.44848 1.21222 0.97448 0.94636 1.03761 1.21887 0.95273 0.95600 0.92783 1.22198 1.01750 0.92517 0.97267 1.21386 0.91279 0.95014 0.97668 1.17870 0.83900 0.84934 0.77339 1.43488 1.19475 1.13361 1.61147 1.90833 1.24636 1.76759 1.52536 1.67580 1.16390 1.15879 1.16569 1.23357 0.99374 0.86964 0.92031 1.42628 1.79450 1.09386 1.07148 1.20245 1.39032 0.94891 0.90420 0.92121 1.26901 1.00383 0.97677 1.04931 1.70976 1.54473 1.09458 1.27987 0.82750 0.76776 0.73502 0.72619 1.22118 1.21342 1.20135 0.94091 0.95507 0.90039 0.90461 0.86832 0.89486 0.94249 0.91108 0.74817 0.83166 0.81956 0.74488 0.74951 0.78220 0.81223 0.94572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.83 9.49 71.98 0.68 -4.15 16 2 C 0.17 5.75 2.84 44.99 0.13 5.87 16 3 H 0.04 1.54 7.56 -2.38 -0.02 1.52 16 4 C -0.12 -3.00 4.29 30.60 0.13 -2.87 16 5 C 0.15 4.23 2.52 45.00 0.11 4.34 16 6 H 0.05 1.90 7.05 -2.39 -0.02 1.88 16 7 C -0.15 -3.54 9.48 71.98 0.68 -2.86 16 8 N -0.69 -17.22 4.40 -445.24 -1.96 -19.18 16 9 C 0.56 17.16 7.75 86.84 0.67 17.83 16 10 O -0.58 -23.86 16.07 -3.80 -0.06 -23.92 16 11 C -0.17 -4.02 5.90 -19.93 -0.12 -4.14 16 12 C -0.03 -0.70 9.71 22.72 0.22 -0.48 16 13 C -0.12 -2.54 9.62 22.58 0.22 -2.32 16 14 C 0.08 1.74 6.75 41.95 0.28 2.02 16 15 C 0.58 11.57 8.09 86.93 0.70 12.28 16 16 N -0.81 -9.36 8.86 -175.27 -1.55 -10.92 16 17 O -0.57 -15.27 17.15 -3.70 -0.06 -15.33 16 18 N -0.45 -8.15 9.52 -183.91 -1.75 -9.90 16 19 C 0.14 2.55 10.71 85.11 0.91 3.46 16 20 N -0.74 -35.76 4.49 -322.94 -1.45 -37.21 16 21 C -0.31 -17.52 9.93 84.03 0.83 -16.69 16 22 H 0.06 3.33 7.83 -2.91 -0.02 3.30 16 23 C -0.11 -6.39 5.50 84.86 0.47 -5.92 16 24 N -0.98 -62.90 13.70 21.65 0.30 -62.61 16 25 Si 1.12 54.07 29.92 68.60 2.05 56.12 16 26 H -0.29 -14.67 7.11 99.48 0.71 -13.97 16 27 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 28 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 29 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.11 1.81 8.14 -2.39 -0.02 1.80 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.41 6.67 6.66 -92.71 -0.62 6.05 16 38 H 0.15 3.80 7.73 -2.91 -0.02 3.77 16 39 H 0.16 3.24 7.63 -2.91 -0.02 3.22 16 40 H 0.42 3.40 8.15 -92.71 -0.76 2.65 16 41 H 0.42 3.23 8.93 -92.71 -0.83 2.40 16 42 H 0.20 2.00 6.41 -2.91 -0.02 1.98 16 43 H 0.36 18.35 6.63 -92.71 -0.61 17.73 16 44 H 0.24 15.53 6.77 -92.71 -0.63 14.90 16 Total: -1.00 -83.22 374.50 -0.16 -83.38 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: -1.60 Total: 33.17 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 5.93 Total: 6.39 kcal Atomic # 7 Polarization: -133.39 SS G_CDS: -6.42 Total: -139.81 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -0.12 Total: -39.25 kcal Atomic # 14 Polarization: 54.07 SS G_CDS: 2.05 Total: 56.12 kcal Total: -83.22 -0.16 -83.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146780576.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.909 kcal (2) G-P(sol) polarization free energy of solvation -83.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds