Wall clock time and date at job start Fri Apr 10 2020 18:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 C 1.53002 * 109.47269 * 185.00423 * 4 2 1 6 6 H 1.09004 * 109.46656 * 304.99461 * 5 4 2 7 7 C 1.52999 * 109.47235 * 185.00066 * 5 4 2 8 8 N 1.46495 * 109.47317 * 64.99221 * 5 4 2 9 9 C 1.34777 * 120.00230 * 204.99663 * 8 5 4 10 10 O 1.21534 * 119.99820 * 0.02562 * 9 8 5 11 11 C 1.48003 * 120.00405 * 180.02562 * 9 8 5 12 12 C 1.39867 * 120.46287 * 180.02562 * 11 9 8 13 13 C 1.38451 * 118.35308 * 179.97438 * 12 11 9 14 14 C 1.39295 * 119.19376 * 359.97438 * 13 12 11 15 15 C 1.48337 * 119.57129 * 179.97438 * 14 13 12 16 16 N 1.34780 * 119.99924 * 180.02562 * 15 14 13 17 17 O 1.21495 * 120.00079 * 359.97438 * 15 14 13 18 18 N 1.32717 * 120.85625 * 0.02562 * 14 13 12 19 19 C 1.31407 * 121.80074 * 359.72247 * 18 14 13 20 20 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 2 1 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 2 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 2 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48498 * 109.47174 * 90.00121 * 25 23 21 27 27 H 1.48501 * 109.47062 * 210.00072 * 25 23 21 28 28 H 1.48504 * 109.46913 * 329.99871 * 25 23 21 29 29 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 30 30 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 31 31 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46805 * 304.99883 * 4 2 1 33 33 H 1.08992 * 109.47408 * 64.99820 * 4 2 1 34 34 H 1.09001 * 109.47265 * 59.99339 * 7 5 4 35 35 H 1.08991 * 109.47415 * 179.97438 * 7 5 4 36 36 H 1.09005 * 109.46583 * 299.99807 * 7 5 4 37 37 H 0.97000 * 120.00046 * 25.00827 * 8 5 4 38 38 H 1.07994 * 120.82524 * 359.97438 * 12 11 9 39 39 H 1.08004 * 120.40149 * 179.97438 * 13 12 11 40 40 H 0.97001 * 120.00067 * 0.02562 * 16 15 14 41 41 H 0.97005 * 119.99764 * 179.97438 * 16 15 14 42 42 H 1.07996 * 119.64422 * 180.26631 * 19 18 14 43 43 H 0.97000 * 119.99792 * 264.99726 * 20 2 1 44 44 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 1 3.9954 -0.9922 0.3868 7 6 4.0852 -1.4383 2.4924 8 7 3.9479 0.7894 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9373 0.4325 0.5723 11 6 5.5484 2.6306 1.2677 12 6 6.8048 3.0812 0.8498 13 6 7.1214 4.4156 1.0398 14 6 6.1853 5.2578 1.6355 15 6 6.5159 6.6888 1.8437 16 7 5.6169 7.5112 2.4197 17 8 7.5975 7.1192 1.4958 18 7 5.0019 4.7962 2.0202 19 6 4.6617 3.5380 1.8531 20 7 2.0183 -0.6907 -1.1962 21 6 2.1491 -0.0075 -2.3757 22 1 1.8926 1.0405 -2.4242 23 6 2.6172 -0.6605 -3.5077 24 7 2.9303 -1.9375 -3.4485 25 14 2.8029 0.2732 -5.1149 26 1 4.1654 0.8587 -5.1927 27 1 2.5981 -0.6569 -6.2543 28 1 1.7929 1.3602 -5.1754 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -0.2618 2.1370 33 1 1.7517 -1.7715 1.2056 34 1 3.8002 -2.4819 2.3595 35 1 5.1715 -1.3617 2.5381 36 1 3.6546 -1.0593 3.4193 37 1 3.3284 1.4129 1.9028 38 1 7.5105 2.4051 0.3902 39 1 8.0824 4.7988 0.7299 40 1 4.7538 7.1673 2.6985 41 1 5.8332 8.4469 2.5562 42 1 3.6877 3.2007 2.1753 43 1 2.2490 -1.6318 -1.1526 44 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146780577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:33 Heat of formation + Delta-G solvation = -34.776129 kcal Electronic energy + Delta-G solvation = -26746.456510 eV Core-core repulsion = 22891.751051 eV Total energy + Delta-G solvation = -3854.705459 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.06701 -39.73449 -38.69898 -36.88659 -34.59040 -34.18686 -32.67403 -32.54689 -31.84314 -30.32408 -28.61681 -26.39776 -25.79164 -23.92285 -23.63313 -22.20370 -21.14001 -20.46301 -19.78505 -18.67583 -17.97443 -17.40598 -17.12595 -16.51549 -15.67587 -15.47250 -15.31766 -14.93252 -14.85758 -14.58542 -14.02066 -13.93365 -13.76615 -13.52919 -13.39060 -13.04188 -12.92162 -12.69277 -12.19382 -12.04600 -11.76931 -11.64803 -11.09229 -10.83755 -10.80227 -10.64978 -10.47843 -10.25624 -10.24244 -10.23930 -10.06240 -9.92615 -9.67482 -9.62547 -9.54370 -8.89156 -8.84224 -6.93284 -5.73854 -3.01927 0.01337 0.87043 2.19666 2.98514 3.03054 3.18804 3.45333 3.50233 3.51750 3.67444 3.78433 4.44612 4.47407 4.61607 4.63826 4.72119 4.87671 5.07256 5.28474 5.34811 5.43889 5.59497 5.63889 5.65976 5.76243 5.83780 5.88989 5.97911 6.08345 6.11830 6.25336 6.30636 6.37479 6.39954 6.52734 6.62510 6.73180 6.87081 6.89057 7.04614 7.31040 7.59885 7.71567 7.85678 8.31260 8.44532 9.56042 10.12879 10.46931 11.48802 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011110 B = 0.003579 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.663010 B = 7821.503519 C = 8864.516354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.132 4.132 5 C 0.143 3.857 6 H 0.109 0.891 7 C -0.161 4.161 8 N -0.707 5.707 9 C 0.559 3.441 10 O -0.519 6.519 11 C -0.149 4.149 12 C -0.023 4.023 13 C -0.114 4.114 14 C 0.085 3.915 15 C 0.579 3.421 16 N -0.834 5.834 17 O -0.534 6.534 18 N -0.462 5.462 19 C 0.131 3.869 20 N -0.720 5.720 21 C -0.236 4.236 22 H 0.067 0.933 23 C -0.010 4.010 24 N -0.931 5.931 25 Si 0.901 3.099 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.393 0.607 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.413 0.587 41 H 0.405 0.595 42 H 0.167 0.833 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.756 12.005 17.367 21.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.040 3.960 6 H 0.126 0.874 7 C -0.220 4.220 8 N -0.358 5.358 9 C 0.344 3.656 10 O -0.395 6.395 11 C -0.155 4.155 12 C -0.049 4.049 13 C -0.135 4.135 14 C -0.053 4.053 15 C 0.362 3.638 16 N -0.398 5.398 17 O -0.410 6.410 18 N -0.173 5.173 19 C -0.030 4.030 20 N -0.362 5.362 21 C -0.367 4.367 22 H 0.085 0.915 23 C -0.207 4.207 24 N -0.579 5.579 25 Si 0.733 3.267 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.209 1.209 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.228 0.772 38 H 0.176 0.824 39 H 0.173 0.827 40 H 0.243 0.757 41 H 0.237 0.763 42 H 0.184 0.816 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.483 12.246 16.949 21.057 hybrid contribution -0.086 0.089 -1.009 1.017 sum 2.397 12.335 15.940 20.297 Atomic orbital electron populations 1.22459 0.99484 1.00852 0.99794 1.20225 0.91633 0.95464 0.86560 0.93728 1.22186 0.93481 1.02460 0.98900 1.21112 0.95340 0.79446 1.00138 0.87352 1.22186 1.01554 1.00308 0.97914 1.45887 1.15855 1.12078 1.61984 1.17900 0.82578 0.86436 0.78703 1.90826 1.51044 1.55450 1.42162 1.21381 0.96489 0.95886 1.01721 1.21852 0.95260 0.95147 0.92682 1.22137 1.01143 0.93045 0.97200 1.21190 0.91165 0.94639 0.98283 1.17885 0.83894 0.84866 0.77139 1.43632 1.19933 1.13122 1.63085 1.90841 1.23053 1.76308 1.50777 1.67471 1.16984 1.16203 1.16663 1.22914 0.98845 0.87633 0.93597 1.42393 1.77998 1.10562 1.05255 1.19141 1.36464 0.93683 0.87430 0.91544 1.24686 1.02099 0.95924 0.97944 1.69642 1.50741 1.08618 1.28890 0.86279 0.77796 0.78665 0.83987 1.21779 1.21790 1.20899 0.94698 0.92891 0.93500 0.91939 0.90398 0.91522 0.92473 0.93030 0.77203 0.82436 0.82680 0.75666 0.76349 0.81575 0.78321 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 9.49 37.16 0.35 -2.40 16 2 C 0.17 3.06 2.84 -67.93 -0.19 2.87 16 3 H 0.04 0.81 7.56 -51.93 -0.39 0.42 16 4 C -0.13 -1.84 4.29 -26.73 -0.11 -1.96 16 5 C 0.14 2.13 2.52 -67.93 -0.17 1.96 16 6 H 0.11 2.17 7.05 -51.93 -0.37 1.81 16 7 C -0.16 -2.02 9.48 37.16 0.35 -1.67 16 8 N -0.71 -9.29 4.40 -54.70 -0.24 -9.53 16 9 C 0.56 8.56 7.75 -12.26 -0.10 8.46 16 10 O -0.52 -10.18 16.07 5.34 0.09 -10.10 16 11 C -0.15 -1.86 5.90 -104.73 -0.62 -2.48 16 12 C -0.02 -0.28 9.71 -38.89 -0.38 -0.65 16 13 C -0.11 -1.27 9.62 -39.11 -0.38 -1.65 16 14 C 0.09 0.95 6.75 -82.94 -0.56 0.39 16 15 C 0.58 6.31 8.09 -12.10 -0.10 6.21 16 16 N -0.83 -5.89 8.86 30.64 0.27 -5.62 16 17 O -0.53 -7.41 17.15 5.37 0.09 -7.32 16 18 N -0.46 -4.78 9.52 -9.48 -0.09 -4.87 16 19 C 0.13 1.33 10.71 -17.18 -0.18 1.15 16 20 N -0.72 -17.10 4.49 -53.42 -0.24 -17.34 16 21 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 22 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 24 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 25 Si 0.90 22.72 29.55 -169.99 -5.02 17.70 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.39 3.84 6.66 -40.82 -0.27 3.57 16 38 H 0.16 1.85 7.73 -52.49 -0.41 1.44 16 39 H 0.16 1.55 7.63 -52.48 -0.40 1.15 16 40 H 0.41 2.32 8.15 -40.82 -0.33 1.99 16 41 H 0.41 2.09 8.93 -40.82 -0.36 1.73 16 42 H 0.17 1.19 6.41 -52.49 -0.34 0.85 16 43 H 0.38 9.79 7.80 -40.82 -0.32 9.48 16 44 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 376.20 15.07 5.67 5.67 Total: -1.00 -35.11 376.20 -7.19 -42.31 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -6.12 Total: 13.20 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -2.33 Total: 3.26 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: 0.43 Total: -64.72 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.18 Total: -17.42 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.11 -7.19 -42.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146780577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.533 kcal (2) G-P(sol) polarization free energy of solvation -35.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds