Wall clock time and date at job start Fri Apr 10 2020 18:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 C 1.53002 * 109.47269 * 185.00423 * 4 2 1 6 6 H 1.09004 * 109.46656 * 304.99461 * 5 4 2 7 7 C 1.52999 * 109.47235 * 185.00066 * 5 4 2 8 8 N 1.46495 * 109.47317 * 64.99221 * 5 4 2 9 9 C 1.34777 * 120.00230 * 204.99663 * 8 5 4 10 10 O 1.21534 * 119.99820 * 0.02562 * 9 8 5 11 11 C 1.48003 * 120.00405 * 180.02562 * 9 8 5 12 12 C 1.39867 * 120.46287 * 180.02562 * 11 9 8 13 13 C 1.38451 * 118.35308 * 179.97438 * 12 11 9 14 14 C 1.39295 * 119.19376 * 359.97438 * 13 12 11 15 15 C 1.48337 * 119.57129 * 179.97438 * 14 13 12 16 16 N 1.34780 * 119.99924 * 180.02562 * 15 14 13 17 17 O 1.21495 * 120.00079 * 359.97438 * 15 14 13 18 18 N 1.32717 * 120.85625 * 0.02562 * 14 13 12 19 19 C 1.31407 * 121.80074 * 359.72247 * 18 14 13 20 20 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 2 1 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 2 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 2 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48498 * 109.47174 * 90.00121 * 25 23 21 27 27 H 1.48501 * 109.47062 * 210.00072 * 25 23 21 28 28 H 1.48504 * 109.46913 * 329.99871 * 25 23 21 29 29 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 30 30 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 31 31 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46805 * 304.99883 * 4 2 1 33 33 H 1.08992 * 109.47408 * 64.99820 * 4 2 1 34 34 H 1.09001 * 109.47265 * 59.99339 * 7 5 4 35 35 H 1.08991 * 109.47415 * 179.97438 * 7 5 4 36 36 H 1.09005 * 109.46583 * 299.99807 * 7 5 4 37 37 H 0.97000 * 120.00046 * 25.00827 * 8 5 4 38 38 H 1.07994 * 120.82524 * 359.97438 * 12 11 9 39 39 H 1.08004 * 120.40149 * 179.97438 * 13 12 11 40 40 H 0.97001 * 120.00067 * 0.02562 * 16 15 14 41 41 H 0.97005 * 119.99764 * 179.97438 * 16 15 14 42 42 H 1.07996 * 119.64422 * 180.26631 * 19 18 14 43 43 H 0.97000 * 119.99792 * 264.99726 * 20 2 1 44 44 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 1 3.9954 -0.9922 0.3868 7 6 4.0852 -1.4383 2.4924 8 7 3.9479 0.7894 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9373 0.4325 0.5723 11 6 5.5484 2.6306 1.2677 12 6 6.8048 3.0812 0.8498 13 6 7.1214 4.4156 1.0398 14 6 6.1853 5.2578 1.6355 15 6 6.5159 6.6888 1.8437 16 7 5.6169 7.5112 2.4197 17 8 7.5975 7.1192 1.4958 18 7 5.0019 4.7962 2.0202 19 6 4.6617 3.5380 1.8531 20 7 2.0183 -0.6907 -1.1962 21 6 2.1491 -0.0075 -2.3757 22 1 1.8926 1.0405 -2.4242 23 6 2.6172 -0.6605 -3.5077 24 7 2.9303 -1.9375 -3.4485 25 14 2.8029 0.2732 -5.1149 26 1 4.1654 0.8587 -5.1927 27 1 2.5981 -0.6569 -6.2543 28 1 1.7929 1.3602 -5.1754 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -0.2618 2.1370 33 1 1.7517 -1.7715 1.2056 34 1 3.8002 -2.4819 2.3595 35 1 5.1715 -1.3617 2.5381 36 1 3.6546 -1.0593 3.4193 37 1 3.3284 1.4129 1.9028 38 1 7.5105 2.4051 0.3902 39 1 8.0824 4.7988 0.7299 40 1 4.7538 7.1673 2.6985 41 1 5.8332 8.4469 2.5562 42 1 3.6877 3.2007 2.1753 43 1 2.2490 -1.6318 -1.1526 44 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146780577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:32 Heat of formation + Delta-G solvation = -63.006576 kcal Electronic energy + Delta-G solvation = -26747.680674 eV Core-core repulsion = 22891.751051 eV Total energy + Delta-G solvation = -3855.929623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.99975 -40.80623 -39.66551 -38.28250 -36.11657 -34.99327 -34.11676 -33.55956 -33.14524 -31.46840 -30.37219 -27.57576 -26.75905 -25.63600 -24.79137 -23.24360 -22.18438 -21.61195 -21.19362 -19.57377 -19.27891 -18.80459 -18.26295 -17.45903 -16.85698 -16.57011 -16.38223 -16.18701 -15.95033 -15.81408 -15.58413 -15.38627 -14.93798 -14.55645 -14.48718 -14.31248 -14.18078 -13.83732 -13.56453 -13.33226 -13.15470 -12.93996 -12.78372 -12.63343 -12.24442 -12.17426 -11.80808 -11.69257 -11.54209 -11.39138 -11.34138 -11.16530 -10.90319 -10.80670 -10.72396 -10.46216 -10.01269 -8.92607 -7.91084 -5.15617 -0.92302 -0.00456 1.27031 1.42694 1.44895 1.51494 1.97116 2.08473 2.22468 2.56753 2.73088 3.00083 3.43921 3.52509 3.64636 3.76165 3.79857 3.87763 3.98480 4.05305 4.16492 4.43075 4.49526 4.58092 4.71787 4.77957 4.83491 4.85635 4.87697 4.97526 5.08218 5.15087 5.23501 5.26342 5.38908 5.44242 5.52579 5.63300 5.68234 5.74270 6.16863 6.32661 6.48213 6.53667 7.15647 7.21214 7.38615 8.20051 8.38489 9.32748 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011110 B = 0.003579 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.663010 B = 7821.503519 C = 8864.516354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.162 3.838 3 H 0.046 0.954 4 C -0.118 4.118 5 C 0.146 3.854 6 H 0.049 0.951 7 C -0.152 4.152 8 N -0.692 5.692 9 C 0.556 3.444 10 O -0.575 6.575 11 C -0.164 4.164 12 C -0.030 4.030 13 C -0.117 4.117 14 C 0.084 3.916 15 C 0.577 3.423 16 N -0.811 5.811 17 O -0.570 6.570 18 N -0.453 5.453 19 C 0.144 3.856 20 N -0.732 5.732 21 C -0.223 4.223 22 H 0.070 0.930 23 C -0.077 4.077 24 N -0.968 5.968 25 Si 0.957 3.043 26 H -0.297 1.297 27 H -0.297 1.297 28 H -0.268 1.268 29 H 0.079 0.921 30 H 0.027 0.973 31 H 0.040 0.960 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.037 0.963 36 H 0.085 0.915 37 H 0.413 0.587 38 H 0.150 0.850 39 H 0.162 0.838 40 H 0.423 0.577 41 H 0.417 0.583 42 H 0.203 0.797 43 H 0.370 0.630 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.372 14.129 19.898 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 H 0.064 0.936 4 C -0.157 4.157 5 C 0.041 3.959 6 H 0.067 0.933 7 C -0.210 4.210 8 N -0.344 5.344 9 C 0.342 3.658 10 O -0.455 6.455 11 C -0.169 4.169 12 C -0.056 4.056 13 C -0.138 4.138 14 C -0.054 4.054 15 C 0.359 3.641 16 N -0.375 5.375 17 O -0.448 6.448 18 N -0.164 5.164 19 C -0.017 4.017 20 N -0.372 5.372 21 C -0.355 4.355 22 H 0.088 0.912 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.787 3.213 26 H -0.225 1.225 27 H -0.223 1.223 28 H -0.193 1.193 29 H 0.098 0.902 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.130 0.870 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.252 0.748 38 H 0.168 0.832 39 H 0.179 0.821 40 H 0.255 0.745 41 H 0.250 0.750 42 H 0.219 0.781 43 H 0.202 0.798 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.254 14.454 19.559 24.322 hybrid contribution 0.518 -0.488 -1.679 1.823 sum 0.772 13.966 17.881 22.702 Atomic orbital electron populations 1.22314 0.97768 1.00820 1.00774 1.20560 0.92621 0.95407 0.85985 0.93574 1.22101 0.92444 1.02456 0.98671 1.20907 0.95871 0.80447 0.98629 0.93261 1.22090 1.00429 1.00303 0.98192 1.45734 1.15547 1.11929 1.61170 1.18337 0.82533 0.87199 0.77747 1.90802 1.52737 1.57134 1.44817 1.21239 0.97349 0.94712 1.03643 1.21884 0.95384 0.95553 0.92790 1.22187 1.01684 0.92564 0.97378 1.21370 0.91355 0.94956 0.97741 1.17885 0.83889 0.84965 0.77312 1.43491 1.19505 1.13375 1.61110 1.90831 1.24597 1.76789 1.52632 1.67574 1.16377 1.16008 1.16472 1.23376 0.99429 0.86934 0.91962 1.42621 1.78176 1.10125 1.06295 1.19500 1.33677 0.93807 0.88559 0.91169 1.25382 1.03681 0.96782 1.01053 1.69788 1.53069 1.10067 1.29070 0.85373 0.77490 0.77755 0.80642 1.22521 1.22329 1.19280 0.90221 0.95352 0.94070 0.86979 0.90492 0.91172 0.94352 0.89592 0.74823 0.83207 0.82073 0.74473 0.74977 0.78094 0.79844 0.94447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.73 9.49 71.98 0.68 -4.05 16 2 C 0.16 5.45 2.84 44.99 0.13 5.58 16 3 H 0.05 1.55 7.56 -2.39 -0.02 1.53 16 4 C -0.12 -2.95 4.29 30.60 0.13 -2.82 16 5 C 0.15 4.19 2.52 44.99 0.11 4.31 16 6 H 0.05 2.05 7.05 -2.38 -0.02 2.04 16 7 C -0.15 -3.56 9.48 71.98 0.68 -2.88 16 8 N -0.69 -16.96 4.40 -445.26 -1.96 -18.92 16 9 C 0.56 16.99 7.75 86.83 0.67 17.66 16 10 O -0.57 -23.75 16.07 -3.82 -0.06 -23.81 16 11 C -0.16 -3.95 5.90 -19.93 -0.12 -4.07 16 12 C -0.03 -0.72 9.71 22.71 0.22 -0.50 16 13 C -0.12 -2.56 9.62 22.58 0.22 -2.34 16 14 C 0.08 1.72 6.75 41.95 0.28 2.01 16 15 C 0.58 11.61 8.09 86.93 0.70 12.31 16 16 N -0.81 -9.39 8.86 -175.26 -1.55 -10.95 16 17 O -0.57 -15.36 17.15 -3.70 -0.06 -15.42 16 18 N -0.45 -8.09 9.52 -183.92 -1.75 -9.84 16 19 C 0.14 2.51 10.71 85.12 0.91 3.42 16 20 N -0.73 -34.92 4.49 -322.93 -1.45 -36.37 16 21 C -0.22 -12.22 9.93 84.04 0.83 -11.38 16 22 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 23 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 24 N -0.97 -60.45 13.06 21.65 0.28 -60.17 16 25 Si 0.96 47.59 29.55 68.60 2.03 49.62 16 26 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 27 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 28 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.41 6.47 6.66 -92.71 -0.62 5.86 16 38 H 0.15 3.78 7.73 -2.91 -0.02 3.76 16 39 H 0.16 3.24 7.63 -2.91 -0.02 3.22 16 40 H 0.42 3.40 8.15 -92.71 -0.76 2.64 16 41 H 0.42 3.25 8.93 -92.70 -0.83 2.43 16 42 H 0.20 1.93 6.41 -2.91 -0.02 1.91 16 43 H 0.37 19.44 7.80 -92.71 -0.72 18.72 16 44 H 0.25 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -80.56 376.20 -0.45 -81.01 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: -1.85 Total: 31.63 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 5.93 Total: 13.23 kcal Atomic # 7 Polarization: -129.82 SS G_CDS: -6.43 Total: -136.25 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.12 Total: -39.23 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -80.56 -0.45 -81.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146780577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.004 kcal (2) G-P(sol) polarization free energy of solvation -80.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds