Wall clock time and date at job start Fri Apr 10 2020 18:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47062 * 2 1 4 4 C 1.53001 * 109.47300 * 239.99659 * 2 1 3 5 5 C 1.53004 * 109.46982 * 175.00244 * 4 2 1 6 6 H 1.08999 * 109.47206 * 304.99520 * 5 4 2 7 7 C 1.53001 * 109.46944 * 184.99957 * 5 4 2 8 8 N 1.46502 * 109.47378 * 64.99856 * 5 4 2 9 9 C 1.36934 * 119.99816 * 204.99874 * 8 5 4 10 10 H 1.07994 * 120.00481 * 0.02562 * 9 8 5 11 11 C 1.38809 * 119.99779 * 180.02562 * 9 8 5 12 12 N 1.31625 * 120.00161 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00220 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47108 * 59.99988 * 13 11 9 15 15 H 1.48502 * 109.47206 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47011 * 299.99916 * 13 11 9 17 17 N 1.46507 * 109.46984 * 119.99541 * 2 1 3 18 18 C 1.34767 * 120.00001 * 275.00132 * 17 2 1 19 19 O 1.21536 * 120.00248 * 359.97438 * 18 17 2 20 20 C 1.48011 * 120.00033 * 180.02562 * 18 17 2 21 21 C 1.39868 * 120.45999 * 179.97438 * 20 18 17 22 22 C 1.38453 * 118.35320 * 179.74563 * 21 20 18 23 23 C 1.39305 * 119.19216 * 0.25216 * 22 21 20 24 24 C 1.48334 * 119.57055 * 179.97438 * 23 22 21 25 25 N 1.34773 * 119.99582 * 180.02562 * 24 23 22 26 26 O 1.21486 * 120.00060 * 359.97438 * 24 23 22 27 27 N 1.32709 * 120.85432 * 0.02562 * 23 22 21 28 28 C 1.31413 * 121.80454 * 359.97438 * 27 23 22 29 29 H 1.09006 * 109.47486 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47656 * 300.00234 * 1 2 3 31 31 H 1.09003 * 109.47270 * 60.00855 * 1 2 3 32 32 H 1.09002 * 109.46927 * 294.99722 * 4 2 1 33 33 H 1.08994 * 109.47284 * 54.99953 * 4 2 1 34 34 H 1.09001 * 109.47266 * 59.99535 * 7 5 4 35 35 H 1.09001 * 109.47079 * 179.97438 * 7 5 4 36 36 H 1.09000 * 109.47207 * 300.00165 * 7 5 4 37 37 H 0.97001 * 119.99352 * 24.99879 * 8 5 4 38 38 H 0.96998 * 120.00028 * 180.02562 * 12 11 9 39 39 H 0.97005 * 119.99512 * 95.00164 * 17 2 1 40 40 H 1.08002 * 120.82727 * 0.02670 * 21 20 18 41 41 H 1.08001 * 120.40605 * 180.23078 * 22 21 20 42 42 H 0.96997 * 120.00647 * 359.97438 * 25 24 23 43 43 H 0.97006 * 119.99865 * 180.02562 * 25 24 23 44 44 H 1.08005 * 119.64185 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3135 6 1 3.8571 0.4357 -1.2677 7 6 4.0645 -1.2252 -2.6238 8 7 4.1537 -1.3342 -0.1822 9 6 5.3943 -0.9855 0.2808 10 1 5.9385 -0.1789 -0.1877 11 6 5.9524 -1.6688 1.3524 12 7 5.2894 -2.6523 1.9232 13 14 7.6445 -1.1928 1.9846 14 1 7.6253 0.2229 2.4326 15 1 8.0104 -2.0681 3.1270 16 1 8.6427 -1.3543 0.8970 17 7 2.0182 -0.6905 1.1963 18 6 2.1469 -0.0182 2.3571 19 8 1.8583 1.1612 2.4116 20 6 2.6408 -0.7157 3.5656 21 6 2.7785 -0.0270 4.7752 22 6 3.2393 -0.7235 5.8795 23 6 3.5527 -2.0745 5.7485 24 6 4.0476 -2.8287 6.9261 25 7 4.3539 -4.1359 6.8089 26 8 4.1777 -2.2678 7.9958 27 7 3.4153 -2.6953 4.5836 28 6 2.9813 -2.0698 3.5125 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 1.7517 -1.7716 -1.2054 33 1 1.6054 -0.2619 -2.1369 34 1 3.6264 -0.6889 -3.4656 35 1 5.1508 -1.1479 -2.6699 36 1 3.7723 -2.2743 -2.6697 37 1 3.6646 -2.0584 0.2388 38 1 5.6793 -3.1295 2.6723 39 1 2.2489 -1.6318 1.1527 40 1 2.5273 1.0209 4.8472 41 1 3.3546 -0.2254 6.8308 42 1 4.2504 -4.5837 5.9547 43 1 4.6772 -4.6292 7.5790 44 1 2.8831 -2.6091 2.5819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146780578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:37 Heat of formation + Delta-G solvation = -27.930780 kcal Electronic energy + Delta-G solvation = -28109.182745 eV Core-core repulsion = 24254.774123 eV Total energy + Delta-G solvation = -3854.408623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.40971 -39.34158 -38.19605 -36.82729 -34.30232 -33.66614 -32.56993 -31.99179 -31.43356 -30.11596 -28.59658 -26.42234 -25.21210 -23.78732 -23.14570 -21.86317 -20.68404 -20.34457 -19.73487 -18.05819 -17.38562 -17.25755 -16.83485 -16.12743 -15.34452 -14.91855 -14.89004 -14.65491 -14.43147 -14.31452 -13.89766 -13.80147 -13.37820 -13.14062 -12.88834 -12.74818 -12.64015 -12.30035 -12.19004 -11.94745 -11.81434 -11.73331 -11.09793 -10.89951 -10.81764 -10.45608 -10.34695 -10.23674 -10.01263 -9.80651 -9.67212 -9.59733 -9.54896 -9.10075 -9.04469 -8.75673 -8.47151 -7.04363 -5.92125 -3.14109 0.67919 1.64684 2.75796 3.37167 3.42632 3.45504 3.49214 3.54677 3.70164 4.34203 4.50553 4.54332 4.99092 5.15015 5.19905 5.27893 5.32467 5.36959 5.44778 5.46710 5.56999 5.61668 5.80370 5.88566 5.93174 6.05127 6.08164 6.16604 6.24556 6.30046 6.33837 6.45451 6.48281 6.52067 6.77684 6.81156 6.92024 6.97113 7.04872 7.42126 7.60084 8.02669 8.12192 8.28318 8.38604 8.73122 9.39766 9.90599 10.26609 11.29993 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011637 B = 0.005462 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.550675 B = 5124.636235 C = 6643.789272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.150 3.850 3 H 0.085 0.915 4 C -0.134 4.134 5 C 0.168 3.832 6 H 0.049 0.951 7 C -0.163 4.163 8 N -0.715 5.715 9 C -0.221 4.221 10 H 0.067 0.933 11 C -0.010 4.010 12 N -0.923 5.923 13 Si 0.898 3.102 14 H -0.289 1.289 15 H -0.292 1.292 16 H -0.288 1.288 17 N -0.690 5.690 18 C 0.574 3.426 19 O -0.557 6.557 20 C -0.165 4.165 21 C -0.029 4.029 22 C -0.140 4.140 23 C 0.084 3.916 24 C 0.581 3.419 25 N -0.835 5.835 26 O -0.546 6.546 27 N -0.454 5.454 28 C 0.192 3.808 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.376 0.624 38 H 0.260 0.740 39 H 0.403 0.597 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.415 0.585 43 H 0.401 0.599 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.786 -1.890 -0.271 8.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.103 0.897 4 C -0.173 4.173 5 C 0.058 3.942 6 H 0.067 0.933 7 C -0.223 4.223 8 N -0.358 5.358 9 C -0.352 4.352 10 H 0.085 0.915 11 C -0.205 4.205 12 N -0.571 5.571 13 Si 0.729 3.271 14 H -0.216 1.216 15 H -0.218 1.218 16 H -0.215 1.215 17 N -0.342 5.342 18 C 0.361 3.639 19 O -0.436 6.436 20 C -0.171 4.171 21 C -0.055 4.055 22 C -0.162 4.162 23 C -0.055 4.055 24 C 0.365 3.635 25 N -0.397 5.397 26 O -0.423 6.423 27 N -0.166 5.166 28 C 0.031 3.969 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.211 0.789 38 H 0.070 0.930 39 H 0.242 0.758 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.246 0.754 43 H 0.231 0.769 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.555 -1.389 0.314 8.673 hybrid contribution 1.222 -0.008 0.268 1.251 sum -7.333 -1.397 0.582 7.488 Atomic orbital electron populations 1.22209 0.96079 1.01751 1.02079 1.20849 0.92615 0.97791 0.84254 0.89700 1.22223 0.97750 1.00683 0.96618 1.20312 0.89723 0.95959 0.88169 0.93295 1.22408 1.01553 1.00371 0.97993 1.42463 1.18644 1.39859 1.34786 1.19184 0.93088 1.12752 1.10192 0.91486 1.24514 0.98330 0.98788 0.98909 1.69417 1.37717 1.24032 1.25901 0.86399 0.84836 0.77634 0.78192 1.21575 1.21760 1.21480 1.45887 1.65418 1.14319 1.08619 1.17860 0.76939 0.86088 0.83014 1.90692 1.51914 1.15576 1.85463 1.21152 1.04471 0.96415 0.95044 1.21606 0.92782 1.00441 0.90691 1.21873 1.00021 0.94128 1.00136 1.21105 0.99441 0.92292 0.92639 1.18002 0.76479 0.82176 0.86837 1.43641 1.68404 1.10823 1.16880 1.90779 1.54220 1.69233 1.28073 1.67502 1.11446 1.39369 0.98233 1.22942 0.87772 0.90415 0.95737 0.92709 0.92333 0.92000 0.91634 0.90622 0.94529 0.92861 0.93551 0.78916 0.92991 0.75824 0.83692 0.83809 0.75382 0.76882 0.80953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.48 37.15 0.35 -1.64 16 2 C 0.15 2.20 2.57 -67.93 -0.17 2.03 16 3 H 0.08 1.44 7.58 -51.93 -0.39 1.04 16 4 C -0.13 -1.81 4.43 -26.73 -0.12 -1.93 16 5 C 0.17 2.87 2.89 -67.93 -0.20 2.67 16 6 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 7 C -0.16 -2.59 9.49 37.16 0.35 -2.24 16 8 N -0.71 -14.74 3.84 -53.43 -0.21 -14.94 16 9 C -0.22 -5.40 9.93 -15.06 -0.15 -5.55 16 10 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 11 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 12 N -0.92 -22.51 10.70 55.49 0.59 -21.92 16 13 Si 0.90 21.56 29.55 -169.99 -5.02 16.54 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 N -0.69 -11.39 3.75 -54.70 -0.21 -11.59 16 18 C 0.57 10.82 7.75 -12.26 -0.10 10.73 16 19 O -0.56 -11.69 16.07 5.33 0.09 -11.61 16 20 C -0.16 -3.02 5.90 -104.73 -0.62 -3.63 16 21 C -0.03 -0.49 9.71 -38.89 -0.38 -0.87 16 22 C -0.14 -2.33 9.62 -39.11 -0.38 -2.70 16 23 C 0.08 1.45 6.75 -82.94 -0.56 0.90 16 24 C 0.58 9.50 8.09 -12.11 -0.10 9.40 16 25 N -0.83 -10.46 8.86 30.64 0.27 -10.19 16 26 O -0.55 -10.15 17.15 5.38 0.09 -10.06 16 27 N -0.45 -7.98 9.52 -9.48 -0.09 -8.07 16 28 C 0.19 3.47 9.02 -17.18 -0.16 3.31 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.38 7.78 5.70 -40.82 -0.23 7.55 16 38 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 39 H 0.40 6.56 4.57 -40.82 -0.19 6.37 16 40 H 0.15 2.30 7.73 -52.49 -0.41 1.89 16 41 H 0.14 2.17 7.63 -52.49 -0.40 1.77 16 42 H 0.42 4.92 8.15 -40.82 -0.33 4.59 16 43 H 0.40 4.02 8.93 -40.82 -0.36 3.65 16 44 H 0.17 3.11 5.82 -52.48 -0.31 2.80 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -28.88 367.37 -7.22 -36.10 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: -5.97 Total: 20.08 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: -2.31 Total: 10.13 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: 0.36 Total: -66.72 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: 0.18 Total: -21.67 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.88 -7.22 -36.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146780578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.171 kcal (2) G-P(sol) polarization free energy of solvation -28.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds