Wall clock time and date at job start Fri Apr 10 2020 18:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47062 * 2 1 4 4 C 1.53001 * 109.47300 * 239.99659 * 2 1 3 5 5 C 1.53004 * 109.46982 * 175.00244 * 4 2 1 6 6 H 1.08999 * 109.47206 * 304.99520 * 5 4 2 7 7 C 1.53001 * 109.46944 * 184.99957 * 5 4 2 8 8 N 1.46502 * 109.47378 * 64.99856 * 5 4 2 9 9 C 1.36934 * 119.99816 * 204.99874 * 8 5 4 10 10 H 1.07994 * 120.00481 * 0.02562 * 9 8 5 11 11 C 1.38809 * 119.99779 * 180.02562 * 9 8 5 12 12 N 1.31625 * 120.00161 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00220 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47108 * 59.99988 * 13 11 9 15 15 H 1.48502 * 109.47206 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47011 * 299.99916 * 13 11 9 17 17 N 1.46507 * 109.46984 * 119.99541 * 2 1 3 18 18 C 1.34767 * 120.00001 * 275.00132 * 17 2 1 19 19 O 1.21536 * 120.00248 * 359.97438 * 18 17 2 20 20 C 1.48011 * 120.00033 * 180.02562 * 18 17 2 21 21 C 1.39868 * 120.45999 * 179.97438 * 20 18 17 22 22 C 1.38453 * 118.35320 * 179.74563 * 21 20 18 23 23 C 1.39305 * 119.19216 * 0.25216 * 22 21 20 24 24 C 1.48334 * 119.57055 * 179.97438 * 23 22 21 25 25 N 1.34773 * 119.99582 * 180.02562 * 24 23 22 26 26 O 1.21486 * 120.00060 * 359.97438 * 24 23 22 27 27 N 1.32709 * 120.85432 * 0.02562 * 23 22 21 28 28 C 1.31413 * 121.80454 * 359.97438 * 27 23 22 29 29 H 1.09006 * 109.47486 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47656 * 300.00234 * 1 2 3 31 31 H 1.09003 * 109.47270 * 60.00855 * 1 2 3 32 32 H 1.09002 * 109.46927 * 294.99722 * 4 2 1 33 33 H 1.08994 * 109.47284 * 54.99953 * 4 2 1 34 34 H 1.09001 * 109.47266 * 59.99535 * 7 5 4 35 35 H 1.09001 * 109.47079 * 179.97438 * 7 5 4 36 36 H 1.09000 * 109.47207 * 300.00165 * 7 5 4 37 37 H 0.97001 * 119.99352 * 24.99879 * 8 5 4 38 38 H 0.96998 * 120.00028 * 180.02562 * 12 11 9 39 39 H 0.97005 * 119.99512 * 95.00164 * 17 2 1 40 40 H 1.08002 * 120.82727 * 0.02670 * 21 20 18 41 41 H 1.08001 * 120.40605 * 180.23078 * 22 21 20 42 42 H 0.96997 * 120.00647 * 359.97438 * 25 24 23 43 43 H 0.97006 * 119.99865 * 180.02562 * 25 24 23 44 44 H 1.08005 * 119.64185 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3135 6 1 3.8571 0.4357 -1.2677 7 6 4.0645 -1.2252 -2.6238 8 7 4.1537 -1.3342 -0.1822 9 6 5.3943 -0.9855 0.2808 10 1 5.9385 -0.1789 -0.1877 11 6 5.9524 -1.6688 1.3524 12 7 5.2894 -2.6523 1.9232 13 14 7.6445 -1.1928 1.9846 14 1 7.6253 0.2229 2.4326 15 1 8.0104 -2.0681 3.1270 16 1 8.6427 -1.3543 0.8970 17 7 2.0182 -0.6905 1.1963 18 6 2.1469 -0.0182 2.3571 19 8 1.8583 1.1612 2.4116 20 6 2.6408 -0.7157 3.5656 21 6 2.7785 -0.0270 4.7752 22 6 3.2393 -0.7235 5.8795 23 6 3.5527 -2.0745 5.7485 24 6 4.0476 -2.8287 6.9261 25 7 4.3539 -4.1359 6.8089 26 8 4.1777 -2.2678 7.9958 27 7 3.4153 -2.6953 4.5836 28 6 2.9813 -2.0698 3.5125 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 1.7517 -1.7716 -1.2054 33 1 1.6054 -0.2619 -2.1369 34 1 3.6264 -0.6889 -3.4656 35 1 5.1508 -1.1479 -2.6699 36 1 3.7723 -2.2743 -2.6697 37 1 3.6646 -2.0584 0.2388 38 1 5.6793 -3.1295 2.6723 39 1 2.2489 -1.6318 1.1527 40 1 2.5273 1.0209 4.8472 41 1 3.3546 -0.2254 6.8308 42 1 4.2504 -4.5837 5.9547 43 1 4.6772 -4.6292 7.5790 44 1 2.8831 -2.6091 2.5819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146780578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:36 Heat of formation + Delta-G solvation = -48.475834 kcal Electronic energy + Delta-G solvation = -28110.073646 eV Core-core repulsion = 24254.774123 eV Total energy + Delta-G solvation = -3855.299523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.78822 -40.70359 -39.53865 -38.25800 -35.79911 -34.90245 -34.15109 -33.35989 -32.87371 -31.48936 -30.12131 -27.57184 -26.56050 -25.53837 -24.54635 -23.15966 -21.95679 -21.69699 -21.13780 -19.34233 -19.07184 -18.67332 -18.14651 -17.43315 -16.76368 -16.48818 -16.25415 -16.07338 -15.80016 -15.68916 -15.48601 -15.35553 -14.77685 -14.43383 -14.25917 -14.10416 -14.02660 -13.68298 -13.52105 -13.28168 -13.16284 -12.89373 -12.76001 -12.61468 -12.26486 -12.18452 -11.69079 -11.61255 -11.55383 -11.38179 -11.13914 -10.95404 -10.86836 -10.76118 -10.46710 -10.19005 -9.83669 -8.76326 -7.82400 -5.00864 -0.70271 0.26775 1.40080 1.42005 1.46865 1.48403 2.09234 2.29345 2.38948 2.59882 2.95386 3.23475 3.52088 3.75025 3.83712 3.92067 3.92404 3.99547 4.09961 4.20310 4.22072 4.42301 4.61372 4.70491 4.73954 4.87741 4.90927 4.92494 4.96035 5.04446 5.13616 5.18289 5.21014 5.41443 5.46097 5.50491 5.65073 5.66483 5.75627 5.77529 6.24237 6.41196 6.63867 6.77616 7.19341 7.30812 7.50782 8.19908 8.48904 9.37092 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011637 B = 0.005462 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.550675 B = 5124.636235 C = 6643.789272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.145 3.855 3 H 0.059 0.941 4 C -0.120 4.120 5 C 0.161 3.839 6 H 0.029 0.971 7 C -0.154 4.154 8 N -0.717 5.717 9 C -0.224 4.224 10 H 0.052 0.948 11 C -0.039 4.039 12 N -0.919 5.919 13 Si 0.926 3.074 14 H -0.303 1.303 15 H -0.300 1.300 16 H -0.289 1.289 17 N -0.681 5.681 18 C 0.568 3.432 19 O -0.585 6.585 20 C -0.177 4.177 21 C -0.032 4.032 22 C -0.136 4.136 23 C 0.075 3.925 24 C 0.579 3.421 25 N -0.812 5.812 26 O -0.572 6.572 27 N -0.455 5.455 28 C 0.192 3.808 29 H 0.070 0.930 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.026 0.974 36 H 0.049 0.951 37 H 0.376 0.624 38 H 0.252 0.748 39 H 0.405 0.595 40 H 0.155 0.845 41 H 0.159 0.841 42 H 0.421 0.579 43 H 0.415 0.585 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.133 -2.709 -1.166 10.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.041 3.959 3 H 0.078 0.922 4 C -0.158 4.158 5 C 0.053 3.947 6 H 0.047 0.953 7 C -0.214 4.214 8 N -0.360 5.360 9 C -0.356 4.356 10 H 0.070 0.930 11 C -0.234 4.234 12 N -0.569 5.569 13 Si 0.759 3.241 14 H -0.231 1.231 15 H -0.227 1.227 16 H -0.216 1.216 17 N -0.332 5.332 18 C 0.355 3.645 19 O -0.467 6.467 20 C -0.183 4.183 21 C -0.058 4.058 22 C -0.158 4.158 23 C -0.064 4.064 24 C 0.362 3.638 25 N -0.376 5.376 26 O -0.451 6.451 27 N -0.166 5.166 28 C 0.031 3.969 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.211 0.789 38 H 0.062 0.938 39 H 0.244 0.756 40 H 0.173 0.827 41 H 0.177 0.823 42 H 0.253 0.747 43 H 0.248 0.752 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -9.918 -2.256 -0.611 10.189 hybrid contribution 1.619 0.266 0.550 1.730 sum -8.299 -1.990 -0.061 8.534 Atomic orbital electron populations 1.22116 0.93634 1.02909 1.02438 1.21019 0.94456 0.96420 0.84014 0.92231 1.22143 0.94732 1.01766 0.97200 1.20499 0.92182 0.94453 0.87568 0.95293 1.22269 0.99975 1.00904 0.98215 1.42461 1.17558 1.40119 1.35830 1.19160 0.94465 1.12044 1.09960 0.93040 1.24764 0.99222 0.99666 0.99778 1.69461 1.37432 1.24156 1.25821 0.85973 0.84372 0.76261 0.77446 1.23122 1.22679 1.21641 1.45940 1.64396 1.14298 1.08604 1.18025 0.76828 0.85851 0.83773 1.90668 1.53438 1.16661 1.85974 1.21281 1.04913 0.96689 0.95409 1.21790 0.92520 1.01000 0.90510 1.22076 0.99062 0.94042 1.00578 1.21418 0.99203 0.92848 0.92900 1.17920 0.76660 0.83083 0.86091 1.43489 1.66683 1.09608 1.17800 1.90770 1.55681 1.69961 1.28697 1.67505 1.11508 1.39375 0.98250 1.22930 0.87743 0.90308 0.95945 0.91094 0.94156 0.89493 0.90165 0.87232 0.91419 0.95427 0.93170 0.78937 0.93847 0.75593 0.82727 0.82296 0.74695 0.75156 0.81029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.48 71.98 0.68 -2.66 16 2 C 0.14 4.03 2.57 44.99 0.12 4.14 16 3 H 0.06 1.99 7.58 -2.39 -0.02 1.97 16 4 C -0.12 -2.88 4.43 30.60 0.14 -2.75 16 5 C 0.16 5.28 2.89 44.99 0.13 5.41 16 6 H 0.03 1.07 8.08 -2.39 -0.02 1.05 16 7 C -0.15 -4.56 9.49 71.98 0.68 -3.88 16 8 N -0.72 -29.12 3.84 -322.94 -1.24 -30.37 16 9 C -0.22 -10.98 9.93 84.03 0.83 -10.15 16 10 H 0.05 2.65 7.83 -2.91 -0.02 2.63 16 11 C -0.04 -1.97 5.50 84.86 0.47 -1.50 16 12 N -0.92 -44.61 10.70 21.65 0.23 -44.38 16 13 Si 0.93 44.53 29.55 68.60 2.03 46.56 16 14 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 15 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 16 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 17 N -0.68 -21.98 3.75 -445.25 -1.67 -23.65 16 18 C 0.57 21.43 7.75 86.84 0.67 22.11 16 19 O -0.58 -24.82 16.07 -3.83 -0.06 -24.88 16 20 C -0.18 -6.46 5.90 -19.93 -0.12 -6.58 16 21 C -0.03 -1.07 9.71 22.72 0.22 -0.85 16 22 C -0.14 -4.44 9.62 22.58 0.22 -4.22 16 23 C 0.07 2.53 6.75 41.96 0.28 2.81 16 24 C 0.58 18.25 8.09 86.93 0.70 18.95 16 25 N -0.81 -19.04 8.86 -175.28 -1.55 -20.59 16 26 O -0.57 -20.67 17.15 -3.67 -0.06 -20.74 16 27 N -0.46 -15.67 9.52 -183.91 -1.75 -17.42 16 28 C 0.19 6.82 9.02 85.12 0.77 7.59 16 29 H 0.07 1.33 8.14 -2.38 -0.02 1.32 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.38 15.19 5.70 -92.71 -0.53 14.66 16 38 H 0.25 12.57 8.31 -92.71 -0.77 11.80 16 39 H 0.41 12.78 4.57 -92.70 -0.42 12.36 16 40 H 0.16 4.87 7.73 -2.91 -0.02 4.85 16 41 H 0.16 4.64 7.63 -2.91 -0.02 4.62 16 42 H 0.42 9.27 8.15 -92.71 -0.76 8.51 16 43 H 0.42 7.53 8.93 -92.70 -0.83 6.70 16 44 H 0.17 6.11 5.82 -2.91 -0.02 6.09 16 Total: -1.00 -62.30 367.37 0.25 -62.05 By element: Atomic # 1 Polarization: 46.46 SS G_CDS: -1.46 Total: 44.99 kcal Atomic # 6 Polarization: 22.63 SS G_CDS: 5.80 Total: 28.42 kcal Atomic # 7 Polarization: -130.42 SS G_CDS: -5.99 Total: -136.41 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -0.12 Total: -45.61 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -62.30 0.25 -62.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146780578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.571 kcal (2) G-P(sol) polarization free energy of solvation -62.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds