Wall clock time and date at job start Fri Apr 10 2020 18:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 110.35153 * 2 1 4 4 C 1.53990 * 110.30521 * 237.85721 * 2 1 3 5 5 N 1.47898 * 107.05873 * 242.30990 * 4 2 1 6 6 C 1.46900 * 111.00396 * 214.16078 * 5 4 2 7 7 C 1.50692 * 109.47500 * 187.27095 * 6 5 4 8 8 O 1.21291 * 120.00286 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00444 * 179.97438 * 7 6 5 10 10 C 1.37100 * 120.00522 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99767 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00173 * 179.97438 * 10 9 7 13 13 N 1.31419 * 119.99926 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00170 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46718 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47282 * 119.99734 * 14 12 10 17 17 H 1.48493 * 109.47314 * 240.00363 * 14 12 10 18 18 C 1.48535 * 105.82104 * 334.66985 * 5 4 2 19 19 C 1.54595 * 110.30593 * 122.14262 * 2 1 3 20 20 H 1.09000 * 110.88018 * 22.44513 * 19 2 1 21 21 N 1.46498 * 110.72357 * 259.22698 * 19 2 1 22 22 C 1.34777 * 119.99828 * 159.76868 * 21 19 2 23 23 O 1.21693 * 120.00014 * 0.28042 * 22 21 19 24 24 C 1.46682 * 120.00182 * 180.27909 * 22 21 19 25 25 C 1.37871 * 126.23390 * 179.69331 * 24 22 21 26 26 C 1.39834 * 107.08109 * 179.84388 * 25 24 22 27 27 C 1.35445 * 107.86807 * 0.41775 * 26 25 24 28 28 N 1.35539 * 108.87303 * 359.74014 * 27 26 25 29 29 H 0.96995 * 125.67702 * 179.97438 * 28 27 26 30 30 H 1.09000 * 109.46901 * 297.85835 * 1 2 3 31 31 H 1.09006 * 109.46928 * 57.85295 * 1 2 3 32 32 H 1.08999 * 109.47261 * 177.85687 * 1 2 3 33 33 H 1.09004 * 109.91386 * 122.95750 * 4 2 1 34 34 H 1.09000 * 110.08914 * 1.75533 * 4 2 1 35 35 H 1.09003 * 109.47053 * 307.27388 * 6 5 4 36 36 H 1.09000 * 109.47350 * 67.26754 * 6 5 4 37 37 H 0.97006 * 119.99600 * 359.97438 * 9 7 6 38 38 H 0.96996 * 119.99796 * 180.02562 * 13 12 10 39 39 H 1.08995 * 110.67408 * 280.77184 * 18 5 4 40 40 H 1.09006 * 110.66877 * 157.63965 * 18 5 4 41 41 H 0.97001 * 120.00384 * 340.05315 * 21 19 2 42 42 H 1.07994 * 126.45492 * 359.97438 * 25 24 22 43 43 H 1.08003 * 126.06651 * 180.15610 * 26 25 24 44 44 H 1.08005 * 125.56923 * 179.71749 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9092 1.0220 0.0000 4 6 2.0644 -0.7684 -1.2228 5 7 2.8312 -1.9236 -0.7082 6 6 3.9751 -2.2263 -1.5788 7 6 4.6246 -3.5089 -1.1272 8 8 4.1789 -4.1114 -0.1735 9 7 5.7009 -3.9866 -1.7829 10 6 6.2915 -5.1537 -1.3723 11 1 5.8945 -5.6902 -0.5232 12 6 7.4007 -5.6464 -2.0487 13 7 7.8834 -4.9939 -3.0823 14 14 8.2059 -7.2363 -1.4889 15 1 7.4774 -7.7720 -0.3109 16 1 8.1615 -8.2290 -2.5924 17 1 9.6192 -6.9715 -1.1178 18 6 3.2855 -1.5349 0.6515 19 6 2.0666 -0.7714 1.2276 20 1 1.3186 -1.4682 1.6059 21 7 2.4867 0.1570 2.2802 22 6 2.5956 -0.2722 3.5532 23 8 2.3499 -1.4321 3.8274 24 6 3.0103 0.6588 4.6081 25 6 3.1572 0.3610 5.9462 26 6 3.5686 1.5347 6.5854 27 6 3.6547 2.5096 5.6491 28 7 3.3180 1.9903 4.4432 29 1 3.2969 2.4762 3.6040 30 1 -0.3633 0.4802 0.9086 31 1 -0.3633 0.5468 -0.8702 32 1 -0.3634 -1.0269 -0.0384 33 1 2.7162 -0.1226 -1.8114 34 1 1.2348 -1.1175 -1.8375 35 1 3.6301 -2.3361 -2.6070 36 1 4.6990 -1.4133 -1.5235 37 1 6.0571 -3.5049 -2.5458 38 1 8.6575 -5.3380 -3.5547 39 1 4.1564 -0.8819 0.5942 40 1 3.5046 -2.4183 1.2512 41 1 2.6825 1.0815 2.0617 42 1 2.9886 -0.5984 6.4124 43 1 3.7763 1.6454 7.6395 44 1 3.9440 3.5337 5.8332 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205959895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:24 Heat of formation + Delta-G solvation = -15.921595 kcal Electronic energy + Delta-G solvation = -26586.589193 eV Core-core repulsion = 22732.701328 eV Total energy + Delta-G solvation = -3853.887865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.49156 -39.93954 -38.60803 -37.58357 -34.62592 -33.83263 -32.70325 -31.30187 -31.17860 -29.91685 -28.56652 -27.23981 -25.34518 -24.16750 -22.81404 -21.31046 -20.75753 -20.61645 -20.21128 -19.17327 -18.87754 -17.84443 -16.58453 -16.17280 -15.88089 -15.36428 -14.90440 -14.69098 -14.56176 -14.30828 -13.99416 -13.93111 -13.83723 -13.61818 -13.57135 -13.17548 -12.92072 -12.70155 -12.53300 -12.37856 -11.99935 -11.72622 -11.47959 -11.35746 -11.25962 -11.06149 -10.96356 -10.65419 -10.30041 -10.18043 -10.16971 -9.46262 -9.27393 -9.20617 -8.48092 -8.45580 -7.98322 -7.89793 -6.37823 -3.78115 1.27664 2.51923 2.78733 2.91851 3.19767 3.28747 3.30055 3.38292 3.94937 4.06342 4.30592 4.37958 4.61209 4.68978 4.71709 4.76002 5.10327 5.11574 5.21087 5.24977 5.27672 5.31315 5.38403 5.45949 5.67531 5.75780 5.80362 5.82046 5.86191 5.88307 5.94443 6.02412 6.07810 6.29042 6.30918 6.45295 6.51564 6.66070 7.04662 7.13609 7.20855 7.33959 7.59893 8.07385 8.11082 8.66506 9.23074 9.58846 10.11306 10.80254 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012844 B = 0.002930 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.474977 B = 9554.307444 C =11042.233686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 H 0.075 0.925 4 C 0.038 3.962 5 N -0.488 5.488 6 C 0.038 3.962 7 C 0.444 3.556 8 O -0.572 6.572 9 N -0.567 5.567 10 C -0.295 4.295 11 H 0.104 0.896 12 C 0.021 3.979 13 N -0.904 5.904 14 Si 0.928 3.072 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.034 3.966 19 C 0.146 3.854 20 H 0.108 0.892 21 N -0.724 5.724 22 C 0.586 3.414 23 O -0.515 6.515 24 C -0.053 4.053 25 C -0.106 4.106 26 C -0.212 4.212 27 C 0.019 3.981 28 N -0.542 5.542 29 H 0.414 0.586 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.391 0.609 38 H 0.270 0.730 39 H 0.039 0.961 40 H 0.107 0.893 41 H 0.390 0.610 42 H 0.149 0.851 43 H 0.143 0.857 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.550 21.039 8.955 25.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 H 0.094 0.906 4 C -0.090 4.090 5 N -0.212 5.212 6 C -0.094 4.094 7 C 0.229 3.771 8 O -0.456 6.456 9 N -0.204 5.204 10 C -0.425 4.425 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.546 5.546 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.095 4.095 19 C 0.041 3.959 20 H 0.125 0.875 21 N -0.376 5.376 22 C 0.373 3.627 23 O -0.389 6.389 24 C -0.166 4.166 25 C -0.133 4.133 26 C -0.236 4.236 27 C -0.117 4.117 28 N -0.138 5.138 29 H 0.251 0.749 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.066 0.934 37 H 0.224 0.776 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.125 0.875 41 H 0.223 0.777 42 H 0.166 0.834 43 H 0.161 0.839 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.215 19.263 9.518 24.237 hybrid contribution 1.525 1.116 -0.964 2.121 sum -9.690 20.379 8.554 24.133 Atomic orbital electron populations 1.21827 0.93645 1.02851 1.01512 1.22229 0.97082 0.98754 0.94505 0.90634 1.22999 0.98506 0.91484 0.96044 1.64445 1.21001 1.34136 1.01667 1.22075 0.92208 0.97393 0.97704 1.19705 0.83272 0.87620 0.86484 1.90536 1.64718 1.60773 1.29524 1.41861 1.26024 1.23091 1.29448 1.19760 1.09432 0.99379 1.13911 0.87858 1.25248 0.97165 0.99656 0.95972 1.69624 1.24971 1.39876 1.20148 0.85809 0.78766 0.81133 0.78728 1.19160 1.20770 1.20820 1.23648 0.94694 1.00240 0.90914 1.22068 0.97251 0.90707 0.85864 0.87451 1.45883 1.70695 1.13402 1.07572 1.17088 0.77421 0.86915 0.81228 1.90910 1.49188 1.16972 1.81854 1.20517 1.15731 0.84217 0.96162 1.21385 1.01401 0.99469 0.91028 1.20926 1.10003 0.93005 0.99691 1.22028 1.05580 0.99809 0.84251 1.42022 1.52925 1.08999 1.09861 0.74887 0.92727 0.92343 0.91519 0.93733 0.89769 0.89161 0.93379 0.77595 0.92019 0.94321 0.87458 0.77665 0.83360 0.83886 0.81258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.89 37.16 0.33 -0.89 16 2 C -0.11 -1.06 3.32 -89.26 -0.30 -1.35 16 3 H 0.08 0.58 7.72 -51.93 -0.40 0.18 16 4 C 0.04 0.46 6.34 -2.76 -0.02 0.44 16 5 N -0.49 -8.26 4.96 -231.89 -1.15 -9.41 16 6 C 0.04 0.69 5.18 -4.98 -0.03 0.66 16 7 C 0.44 10.81 7.58 -10.99 -0.08 10.73 16 8 O -0.57 -16.09 14.42 5.55 0.08 -16.01 16 9 N -0.57 -14.71 5.29 -10.97 -0.06 -14.77 16 10 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 11 H 0.10 3.12 7.16 -52.48 -0.38 2.74 16 12 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 13 N -0.90 -25.01 13.05 55.50 0.72 -24.29 16 14 Si 0.93 21.58 29.55 -169.99 -5.02 16.55 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.03 0.57 5.54 -1.89 -0.01 0.56 16 19 C 0.15 1.91 2.89 -66.07 -0.19 1.72 16 20 H 0.11 1.66 7.42 -51.93 -0.39 1.27 16 21 N -0.72 -7.92 5.20 -53.31 -0.28 -8.19 16 22 C 0.59 8.08 7.79 -12.85 -0.10 7.98 16 23 O -0.51 -9.47 16.61 5.20 0.09 -9.39 16 24 C -0.05 -0.61 7.06 -81.98 -0.58 -1.19 16 25 C -0.11 -1.22 10.65 -39.12 -0.42 -1.64 16 26 C -0.21 -1.86 10.81 -39.98 -0.43 -2.29 16 27 C 0.02 0.13 11.89 -16.91 -0.20 -0.07 16 28 N -0.54 -3.98 5.99 -9.39 -0.06 -4.03 16 29 H 0.41 1.70 8.19 -40.82 -0.33 1.36 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.04 0.48 7.77 -51.93 -0.40 0.08 16 34 H 0.08 0.96 7.69 -51.93 -0.40 0.56 16 35 H 0.09 1.47 8.11 -51.93 -0.42 1.05 16 36 H 0.05 0.79 7.90 -51.93 -0.41 0.38 16 37 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.04 0.63 7.85 -51.93 -0.41 0.22 16 40 H 0.11 2.34 6.91 -51.93 -0.36 1.98 16 41 H 0.39 2.83 7.46 -40.82 -0.30 2.52 16 42 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 44 H 0.17 0.55 8.06 -52.48 -0.42 0.12 16 LS Contribution 368.50 15.07 5.55 5.55 Total: -1.00 -36.14 368.50 -8.58 -44.72 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -6.20 Total: 12.71 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -2.26 Total: 6.56 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.82 Total: -60.70 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: 0.17 Total: -25.40 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.14 -8.58 -44.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205959895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.794 kcal (2) G-P(sol) polarization free energy of solvation -36.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds