Wall clock time and date at job start Fri Apr 10 2020 18:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47064 * 2 1 4 4 C 1.47199 * 109.46757 * 239.99500 * 2 1 3 5 5 N 2.60798 * 109.46972 * 239.99673 * 2 1 3 6 6 C 1.50698 * 109.46838 * 119.99999 * 2 1 3 7 7 O 1.21284 * 120.00286 * 85.69212 * 6 2 1 8 8 N 1.34774 * 119.99992 * 265.69281 * 6 2 1 9 9 C 1.47217 * 136.38053 * 5.01610 * 8 6 2 10 10 C 1.53907 * 87.74267 * 152.01324 * 9 8 6 11 11 H 1.09004 * 115.07493 * 141.24268 * 10 9 8 12 12 C 1.53157 * 111.75211 * 274.09280 * 10 9 8 13 13 C 1.51723 * 109.35131 * 139.09336 * 12 10 9 14 14 N 1.46403 * 108.90272 * 297.63624 * 13 12 10 15 15 C 1.46900 * 110.99918 * 190.31894 * 14 13 12 16 16 C 1.50702 * 109.47244 * 63.26455 * 15 14 13 17 17 O 1.21283 * 119.99620 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99735 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99557 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00326 * 0.02562 * 19 18 16 21 21 C 1.38945 * 119.99876 * 180.02562 * 19 18 16 22 22 N 1.31421 * 119.99989 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00308 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46987 * 60.00110 * 23 21 19 25 25 H 1.48503 * 109.47745 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47085 * 300.00381 * 23 21 19 27 27 C 1.45494 * 113.13226 * 64.76848 * 14 13 12 28 28 C 1.46634 * 136.38387 * 184.63961 * 8 6 2 29 29 H 1.09004 * 111.72839 * 95.34795 * 28 8 6 30 30 H 1.09001 * 109.46867 * 296.40988 * 1 2 3 31 31 H 1.09003 * 109.46810 * 56.40681 * 1 2 3 32 32 H 1.08998 * 109.47327 * 176.40574 * 1 2 3 33 33 H 1.08996 * 113.50948 * 266.74077 * 9 8 6 34 34 H 1.08998 * 113.50497 * 37.30013 * 9 8 6 35 35 H 1.09001 * 109.58126 * 258.81416 * 12 10 9 36 36 H 1.08997 * 109.57900 * 19.22113 * 12 10 9 37 37 H 1.08999 * 109.73288 * 177.72907 * 13 12 10 38 38 H 1.09000 * 109.54887 * 57.42711 * 13 12 10 39 39 H 1.09000 * 109.47197 * 183.26611 * 15 14 13 40 40 H 1.09006 * 109.46970 * 303.26300 * 15 14 13 41 41 H 0.96991 * 120.00104 * 0.02562 * 18 16 15 42 42 H 0.97002 * 119.99446 * 180.02562 * 22 21 19 43 43 H 1.08996 * 108.57780 * 189.35266 * 27 14 13 44 44 H 1.08990 * 108.57969 * 71.67903 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6940 -1.2018 5 7 2.3993 -1.2295 -2.1294 6 6 2.0323 -0.7104 1.2305 7 8 2.1600 -1.9165 1.2248 8 7 2.3395 -0.0055 2.3373 9 6 2.2428 1.3991 2.7673 10 6 2.1293 0.8850 4.2136 11 1 2.6573 1.4806 4.9583 12 6 0.6827 0.5428 4.5824 13 6 0.6604 -0.7400 5.3923 14 7 1.1837 -1.8307 4.5677 15 6 0.9588 -3.1319 5.2114 16 6 -0.5222 -3.3798 5.3394 17 8 -1.3125 -2.5536 4.9347 18 7 -0.9683 -4.5196 5.9036 19 6 -2.3156 -4.7449 6.0205 20 1 -3.0194 -4.0092 5.6602 21 6 -2.7756 -5.9196 6.6027 22 7 -1.9191 -6.8146 7.0417 23 14 -4.6112 -6.2270 6.7614 24 1 -5.2313 -6.2286 5.4120 25 1 -4.8386 -7.5421 7.4127 26 1 -5.2232 -5.1543 7.5861 27 6 2.5846 -1.6589 4.2145 28 6 2.9138 -0.2953 3.6551 29 1 3.9883 -0.1132 3.6759 30 1 -0.3633 0.4571 0.9204 31 1 -0.3633 0.5686 -0.8561 32 1 -0.3634 -1.0256 -0.0644 33 1 3.1494 1.9745 2.5802 34 1 1.3428 1.9014 2.4126 35 1 0.2564 1.3506 5.1771 36 1 0.0965 0.4068 3.6736 37 1 -0.3623 -0.9680 5.6924 38 1 1.2831 -0.6223 6.2791 39 1 1.4080 -3.9192 4.6060 40 1 1.4140 -3.1307 6.2019 41 1 -0.3362 -5.1801 6.2276 42 1 -2.2404 -7.6349 7.4478 43 1 2.8506 -2.4120 3.4728 44 1 3.1901 -1.8242 5.1055 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221446717.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:44 Heat of formation + Delta-G solvation = 12.496889 kcal Electronic energy + Delta-G solvation = -27547.239164 eV Core-core repulsion = 23694.583617 eV Total energy + Delta-G solvation = -3852.655547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.42059 -39.04802 -38.24564 -36.59655 -36.01990 -33.82094 -33.45302 -32.08095 -31.16010 -29.73708 -28.55258 -25.89335 -25.42605 -24.02557 -23.75144 -21.85172 -20.92167 -19.17902 -18.43738 -17.84741 -17.76688 -17.34042 -16.44812 -15.84760 -15.66957 -15.08094 -14.91407 -14.63284 -14.36479 -14.16734 -13.99805 -13.76610 -13.63259 -13.25577 -13.13526 -13.05370 -12.79963 -12.48085 -12.39727 -12.33341 -12.04621 -11.89537 -11.73127 -11.59534 -11.46757 -11.31061 -11.06675 -10.98173 -10.52153 -10.40305 -10.25660 -10.17594 -9.69440 -9.41334 -8.82636 -8.32079 -7.92474 -7.68148 -6.37846 -3.78535 2.16746 2.41728 2.62589 2.87099 3.22301 3.27897 3.31999 3.66226 3.88991 3.95655 4.11244 4.14266 4.28490 4.56228 4.63488 4.70483 4.78829 4.97463 5.08297 5.11918 5.17196 5.24308 5.29269 5.35261 5.38461 5.46329 5.52024 5.60924 5.77361 5.81993 5.89534 5.90199 5.97700 6.03929 6.10807 6.33552 6.45832 6.54265 7.30696 7.39670 7.56703 7.58429 7.65298 8.01966 8.10409 8.66142 9.21806 9.59057 10.10813 10.79950 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015052 B = 0.003310 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.770914 B = 8456.715334 C = 9305.383080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.004 4.004 3 H 0.128 0.872 4 C 0.222 3.778 5 N -0.416 5.416 6 C 0.557 3.443 7 O -0.511 6.511 8 N -0.631 5.631 9 C 0.096 3.904 10 C -0.120 4.120 11 H 0.101 0.899 12 C -0.091 4.091 13 C 0.054 3.946 14 N -0.515 5.515 15 C 0.053 3.947 16 C 0.446 3.554 17 O -0.577 6.577 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.056 3.944 28 C 0.146 3.854 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.019 0.981 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.089 0.911 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.707 19.582 -5.006 22.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.029 4.029 3 H 0.145 0.855 4 C -0.097 4.097 5 N -0.091 5.091 6 C 0.343 3.657 7 O -0.385 6.385 8 N -0.368 5.368 9 C -0.027 4.027 10 C -0.139 4.139 11 H 0.119 0.881 12 C -0.129 4.129 13 C -0.073 4.073 14 N -0.240 5.240 15 C -0.078 4.078 16 C 0.232 3.768 17 O -0.462 6.462 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.200 1.200 27 C -0.073 4.073 28 C 0.043 3.957 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.037 0.963 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.107 0.893 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 10.485 18.332 -7.238 22.324 hybrid contribution 0.018 -0.499 1.377 1.465 sum 10.504 17.832 -5.861 21.510 Atomic orbital electron populations 1.21736 0.88905 1.04979 1.04150 1.18740 0.99386 0.99257 0.85481 0.85463 1.28187 0.93721 0.93766 0.94011 1.81193 1.08165 1.07826 1.11931 1.19275 0.77829 0.86824 0.81739 1.90799 1.52090 1.13426 1.82156 1.49316 1.63117 1.10556 1.13771 1.23319 1.02294 0.84044 0.93020 1.22934 0.98524 0.96506 0.95971 0.88075 1.21139 0.93029 0.97169 1.01514 1.21916 1.02863 0.89988 0.92580 1.60052 1.16074 1.01502 1.46373 1.21752 0.96740 0.91757 0.97534 1.19714 0.89168 0.84030 0.83884 1.90447 1.56819 1.45913 1.52980 1.41861 1.08144 1.17229 1.52866 1.19635 0.82603 1.03738 1.36786 0.87985 1.25254 1.00159 0.95557 0.96993 1.69613 1.34674 1.09461 1.40646 0.85930 0.82302 0.77391 0.78647 1.19909 1.21027 1.19953 1.21399 0.89281 0.96926 0.99688 1.21997 0.97563 0.95481 0.80692 0.89145 0.89704 0.90522 0.90450 0.89584 0.89734 0.91228 0.90423 0.87213 0.96330 0.89497 0.93703 0.77514 0.91867 0.89321 0.94959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.13 37.16 0.34 -0.82 16 2 C 0.00 -0.04 3.00 -94.56 -0.28 -0.32 16 3 H 0.13 0.60 7.90 -51.93 -0.41 0.19 16 4 C 0.22 2.74 14.14 -20.76 -0.29 2.44 16 5 N -0.42 -6.24 18.54 42.15 0.78 -5.46 16 6 C 0.56 7.02 7.01 -10.99 -0.08 6.95 16 7 O -0.51 -9.06 15.75 5.55 0.09 -8.97 16 8 N -0.63 -6.34 3.37 -184.89 -0.62 -6.96 16 9 C 0.10 0.55 7.59 -10.51 -0.08 0.47 16 10 C -0.12 -0.92 4.63 -90.41 -0.42 -1.34 16 11 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 12 C -0.09 -0.99 5.65 -27.30 -0.15 -1.15 16 13 C 0.05 0.80 5.05 -4.74 -0.02 0.78 16 14 N -0.52 -8.52 4.34 -239.75 -1.04 -9.56 16 15 C 0.05 0.98 5.43 -4.97 -0.03 0.96 16 16 C 0.45 10.56 7.41 -10.98 -0.08 10.48 16 17 O -0.58 -15.18 13.73 5.55 0.08 -15.10 16 18 N -0.56 -14.45 5.29 -10.97 -0.06 -14.50 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.85 13.05 55.50 0.72 -24.13 16 23 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 C 0.06 0.75 4.95 -5.58 -0.03 0.72 16 28 C 0.15 1.44 4.10 -76.52 -0.31 1.12 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.37 8.03 -51.93 -0.42 -0.05 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.99 7.69 -51.93 -0.40 0.59 16 37 H 0.11 2.08 5.51 -51.93 -0.29 1.79 16 38 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.09 1.57 8.07 -51.93 -0.42 1.15 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 42 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.09 1.39 6.99 -51.93 -0.36 1.03 16 44 H 0.03 0.39 8.09 -51.93 -0.42 -0.03 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -35.92 367.14 -7.58 -43.50 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.35 Total: 7.17 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: -1.68 Total: 12.32 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -0.22 Total: -60.61 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: 0.16 Total: -24.08 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.92 -7.58 -43.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221446717.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.995 kcal (2) G-P(sol) polarization free energy of solvation -35.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds