Wall clock time and date at job start Fri Apr 10 2020 18:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34873 * 120.30928 * 2 1 4 4 C 1.38048 * 119.94917 * 179.97438 * 3 2 1 5 5 C 1.47578 * 119.72539 * 179.97438 * 4 3 2 6 6 O 1.21588 * 120.00049 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99698 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99494 * 179.71932 * 7 5 4 9 9 C 1.53005 * 109.46740 * 180.27655 * 8 7 5 10 10 H 1.09000 * 109.58201 * 299.82877 * 9 8 7 11 11 C 1.53188 * 109.58300 * 179.40389 * 9 8 7 12 12 C 1.53046 * 109.30957 * 185.57716 * 11 9 8 13 13 C 1.53037 * 109.54025 * 61.36495 * 12 11 9 14 14 C 1.53189 * 109.31184 * 298.63801 * 13 12 11 15 15 N 1.46923 * 109.58739 * 60.11252 * 9 8 7 16 16 C 1.36942 * 120.62890 * 353.41790 * 15 9 8 17 17 H 1.07997 * 119.99961 * 49.47509 * 16 15 9 18 18 C 1.38815 * 119.99765 * 229.46833 * 16 15 9 19 19 N 1.31621 * 119.99864 * 188.57203 * 18 16 15 20 20 Si 1.86800 * 120.00048 * 8.57821 * 18 16 15 21 21 H 1.48492 * 109.47505 * 84.38605 * 20 18 16 22 22 H 1.48502 * 109.47122 * 204.38992 * 20 18 16 23 23 H 1.48502 * 109.47013 * 324.38304 * 20 18 16 24 24 N 1.34151 * 120.54464 * 0.24353 * 4 3 2 25 25 C 1.30607 * 120.63041 * 359.48358 * 24 4 3 26 26 C 1.34958 * 120.30716 * 179.97438 * 2 1 3 27 27 O 1.21857 * 120.27166 * 0.02562 * 26 2 1 28 28 H 1.08997 * 109.46795 * 90.00554 * 1 2 3 29 29 H 1.08998 * 109.47159 * 210.00464 * 1 2 3 30 30 H 1.08993 * 109.47283 * 330.00651 * 1 2 3 31 31 H 1.07998 * 120.02159 * 359.94648 * 3 2 1 32 32 H 0.96997 * 119.99749 * 359.97438 * 7 5 4 33 33 H 1.08995 * 109.47544 * 300.27618 * 8 7 5 34 34 H 1.08993 * 109.46994 * 60.27850 * 8 7 5 35 35 H 1.09001 * 109.50232 * 305.52645 * 11 9 8 36 36 H 1.08994 * 109.50015 * 65.62874 * 11 9 8 37 37 H 1.08997 * 109.45981 * 301.34475 * 12 11 9 38 38 H 1.09006 * 109.44935 * 181.37798 * 12 11 9 39 39 H 1.08996 * 109.49937 * 178.68441 * 13 12 11 40 40 H 1.09003 * 109.49837 * 58.58452 * 13 12 11 41 41 H 1.09002 * 109.58785 * 294.84526 * 14 13 12 42 42 H 1.09002 * 109.70561 * 174.49065 * 14 13 12 43 43 H 0.96993 * 119.99608 * 180.02562 * 19 18 16 44 44 H 1.08001 * 119.98695 * 180.27476 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1457 1.1644 0.0000 4 6 3.5261 1.1557 0.0005 5 6 4.2659 2.4327 0.0000 6 8 3.6596 3.4866 -0.0015 7 7 5.6137 2.4306 0.0010 8 6 6.3481 3.6982 -0.0058 9 6 7.8520 3.4163 -0.0100 10 1 8.1200 2.8500 0.8819 11 6 8.6224 4.7402 -0.0321 12 6 10.1187 4.4525 -0.1765 13 6 10.3745 3.7227 -1.4971 14 6 9.6237 2.3874 -1.4916 15 7 8.2049 2.6436 -1.2087 16 6 7.2300 2.1716 -2.0466 17 1 6.4533 2.8343 -2.3987 18 6 7.2402 0.8415 -2.4435 19 7 6.4094 0.4266 -3.3763 20 14 8.4329 -0.3598 -1.6536 21 1 7.8507 -0.8762 -0.3890 22 1 8.6830 -1.4916 -2.5819 23 1 9.7134 0.3335 -1.3623 24 7 4.2006 -0.0039 -0.0039 25 6 3.5638 -1.1442 0.0014 26 6 2.1461 -1.1651 0.0005 27 8 1.5475 -2.2265 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.6111 2.1028 -0.0009 32 1 6.0974 1.5898 0.0025 33 1 6.0827 4.2672 -0.8967 34 1 6.0887 4.2731 0.8831 35 1 8.2850 5.3436 -0.8748 36 1 8.4440 5.2806 0.8975 37 1 10.4503 3.8285 0.6533 38 1 10.6714 5.3921 -0.1679 39 1 11.4428 3.5389 -1.6102 40 1 10.0204 4.3356 -2.3261 41 1 10.0385 1.7381 -0.7206 42 1 9.7212 1.9069 -2.4652 43 1 6.4163 -0.5029 -3.6533 44 1 4.1173 -2.0716 0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024564477.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:08 Heat of formation + Delta-G solvation = 8.110724 kcal Electronic energy + Delta-G solvation = -28110.141953 eV Core-core repulsion = 24257.296208 eV Total energy + Delta-G solvation = -3852.845746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74098 -39.18607 -37.98971 -37.12844 -35.86155 -34.17034 -32.93369 -31.02089 -30.72025 -30.19595 -28.48381 -26.25761 -24.98174 -24.35897 -23.59905 -22.49634 -20.96606 -20.22217 -19.46023 -18.46120 -17.92671 -16.85666 -16.44862 -16.39298 -15.59779 -15.33002 -15.22229 -14.89540 -14.44895 -14.08732 -13.85991 -13.69971 -13.58665 -13.57029 -13.17657 -13.10472 -12.71368 -12.42404 -12.38492 -12.15920 -11.79845 -11.57251 -11.35504 -11.22803 -11.01620 -10.78312 -10.58310 -10.46415 -10.10687 -9.81309 -9.75617 -9.49054 -9.35592 -9.14960 -8.50076 -8.26539 -7.96036 -6.58363 -5.94818 -3.56793 0.60928 1.44094 2.24996 3.20161 3.39106 3.47592 3.52158 3.74653 4.06415 4.29805 4.33759 4.55982 4.72130 4.77891 4.93003 4.95968 5.18396 5.29154 5.30723 5.40215 5.43340 5.48519 5.54042 5.82451 5.83406 5.94197 6.03171 6.11543 6.20174 6.26242 6.29545 6.46489 6.50037 6.52685 6.53127 6.62835 6.82754 6.84844 7.04856 7.23063 7.58788 7.80867 8.12590 8.37731 8.47916 8.90812 8.97249 9.69338 10.16442 11.18228 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.004550 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.350010 B = 6152.853273 C = 7283.787775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.482 5.482 3 C 0.155 3.845 4 C -0.051 4.051 5 C 0.583 3.417 6 O -0.572 6.572 7 N -0.664 5.664 8 C 0.138 3.862 9 C 0.159 3.841 10 H 0.035 0.965 11 C -0.127 4.127 12 C -0.108 4.108 13 C -0.139 4.139 14 C 0.138 3.862 15 N -0.604 5.604 16 C -0.270 4.270 17 H 0.074 0.926 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.845 3.155 21 H -0.279 1.279 22 H -0.302 1.302 23 H -0.239 1.239 24 N -0.354 5.354 25 C 0.036 3.964 26 C 0.476 3.524 27 O -0.534 6.534 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.185 0.815 32 H 0.420 0.580 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.030 0.970 42 H 0.063 0.937 43 H 0.262 0.738 44 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.428 3.055 8.942 10.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.193 5.193 3 C 0.021 3.979 4 C -0.175 4.175 5 C 0.368 3.632 6 O -0.454 6.454 7 N -0.313 5.313 8 C 0.014 3.986 9 C 0.052 3.948 10 H 0.053 0.947 11 C -0.167 4.167 12 C -0.146 4.146 13 C -0.178 4.178 14 C 0.013 3.987 15 N -0.330 5.330 16 C -0.399 4.399 17 H 0.091 0.909 18 C -0.149 4.149 19 N -0.538 5.538 20 Si 0.674 3.326 21 H -0.205 1.205 22 H -0.229 1.229 23 H -0.164 1.164 24 N -0.069 5.069 25 C -0.154 4.154 26 C 0.273 3.727 27 O -0.411 6.411 28 H 0.102 0.898 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.202 0.798 32 H 0.259 0.741 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -4.502 3.159 8.817 10.392 hybrid contribution -0.060 -1.256 -0.005 1.258 sum -4.562 1.902 8.812 10.104 Atomic orbital electron populations 1.22317 0.76188 1.05401 1.04632 1.45512 1.09948 1.07027 1.56829 1.23169 0.93741 0.90749 0.90258 1.20593 0.89387 0.93663 1.13864 1.17092 0.82881 0.85988 0.77267 1.90718 1.68958 1.31426 1.54307 1.45681 1.04829 1.11139 1.69605 1.21260 0.90793 0.85664 1.00898 1.20852 0.91568 0.91835 0.90511 0.94720 1.21921 0.95640 0.98151 1.00962 1.21362 0.96026 0.99192 0.97993 1.22076 0.98873 0.99536 0.97314 1.21654 0.84821 0.93128 0.99063 1.44327 1.01244 1.63497 1.23900 1.18590 1.06378 0.92386 1.22497 0.90855 1.25660 0.95812 0.96819 0.96597 1.69771 1.37896 1.16368 1.29743 0.87686 0.84013 0.81329 0.79598 1.20526 1.22949 1.16415 1.67752 1.40278 0.97721 1.01150 1.24681 0.89018 0.97761 1.03941 1.18842 0.90817 0.83226 0.79788 1.90905 1.70702 1.28143 1.51365 0.89841 0.88387 0.88977 0.79798 0.74073 0.91189 0.92456 0.91736 0.92704 0.92812 0.93275 0.93317 0.92120 0.95269 0.91806 0.92832 0.79477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 10.43 59.85 0.62 1.10 16 2 N -0.48 -6.24 2.97 -126.20 -0.38 -6.62 16 3 C 0.16 2.14 9.90 -16.28 -0.16 1.98 16 4 C -0.05 -0.90 6.71 -83.11 -0.56 -1.46 16 5 C 0.58 11.51 7.79 -12.45 -0.10 11.41 16 6 O -0.57 -11.82 16.28 5.29 0.09 -11.74 16 7 N -0.66 -13.38 4.12 -61.33 -0.25 -13.63 16 8 C 0.14 2.56 4.50 -4.04 -0.02 2.54 16 9 C 0.16 2.87 3.01 -67.60 -0.20 2.67 16 10 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 11 C -0.13 -1.95 5.37 -26.61 -0.14 -2.09 16 12 C -0.11 -1.58 5.88 -26.69 -0.16 -1.74 16 13 C -0.14 -2.29 6.08 -26.61 -0.16 -2.45 16 14 C 0.14 2.76 4.03 -3.71 -0.01 2.74 16 15 N -0.60 -12.90 2.41 -164.78 -0.40 -13.30 16 16 C -0.27 -6.79 6.60 -15.06 -0.10 -6.89 16 17 H 0.07 2.11 7.11 -52.49 -0.37 1.74 16 18 C 0.05 1.42 5.28 -17.43 -0.09 1.33 16 19 N -0.90 -25.83 13.97 55.49 0.78 -25.05 16 20 Si 0.85 20.01 26.62 -169.99 -4.53 15.49 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 23 H -0.24 -5.20 3.87 56.52 0.22 -4.99 16 24 N -0.35 -6.56 9.62 -9.34 -0.09 -6.65 16 25 C 0.04 0.59 11.23 -16.72 -0.19 0.40 16 26 C 0.48 7.48 7.45 -14.82 -0.11 7.37 16 27 O -0.53 -9.37 16.74 5.05 0.08 -9.29 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.10 0.85 7.46 -51.93 -0.39 0.47 16 30 H 0.09 0.50 8.04 -51.93 -0.42 0.08 16 31 H 0.19 2.05 7.58 -52.49 -0.40 1.65 16 32 H 0.42 9.08 6.63 -40.82 -0.27 8.81 16 33 H 0.07 1.44 7.47 -51.93 -0.39 1.05 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.03 0.59 6.36 -51.93 -0.33 0.26 16 42 H 0.06 1.38 6.49 -51.93 -0.34 1.05 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.19 2.72 8.06 -52.49 -0.42 2.30 16 LS Contribution 351.86 15.07 5.30 5.30 Total: -1.00 -31.99 351.86 -7.22 -39.21 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -6.45 Total: 9.36 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: -1.38 Total: 16.92 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -0.34 Total: -65.25 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: 0.17 Total: -21.02 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.53 Total: 15.49 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.99 -7.22 -39.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024564477.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.322 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds