Wall clock time and date at job start Fri Apr 10 2020 18:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34873 * 120.30928 * 2 1 4 4 C 1.38048 * 119.94917 * 179.97438 * 3 2 1 5 5 C 1.47578 * 119.72539 * 179.97438 * 4 3 2 6 6 O 1.21588 * 120.00049 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99698 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99494 * 179.71932 * 7 5 4 9 9 C 1.53005 * 109.46740 * 180.27655 * 8 7 5 10 10 H 1.09000 * 109.58201 * 299.82877 * 9 8 7 11 11 C 1.53188 * 109.58300 * 179.40389 * 9 8 7 12 12 C 1.53046 * 109.30957 * 185.57716 * 11 9 8 13 13 C 1.53037 * 109.54025 * 61.36495 * 12 11 9 14 14 C 1.53189 * 109.31184 * 298.63801 * 13 12 11 15 15 N 1.46923 * 109.58739 * 60.11252 * 9 8 7 16 16 C 1.36942 * 120.62890 * 353.41790 * 15 9 8 17 17 H 1.07997 * 119.99961 * 49.47509 * 16 15 9 18 18 C 1.38815 * 119.99765 * 229.46833 * 16 15 9 19 19 N 1.31621 * 119.99864 * 188.57203 * 18 16 15 20 20 Si 1.86800 * 120.00048 * 8.57821 * 18 16 15 21 21 H 1.48492 * 109.47505 * 84.38605 * 20 18 16 22 22 H 1.48502 * 109.47122 * 204.38992 * 20 18 16 23 23 H 1.48502 * 109.47013 * 324.38304 * 20 18 16 24 24 N 1.34151 * 120.54464 * 0.24353 * 4 3 2 25 25 C 1.30607 * 120.63041 * 359.48358 * 24 4 3 26 26 C 1.34958 * 120.30716 * 179.97438 * 2 1 3 27 27 O 1.21857 * 120.27166 * 0.02562 * 26 2 1 28 28 H 1.08997 * 109.46795 * 90.00554 * 1 2 3 29 29 H 1.08998 * 109.47159 * 210.00464 * 1 2 3 30 30 H 1.08993 * 109.47283 * 330.00651 * 1 2 3 31 31 H 1.07998 * 120.02159 * 359.94648 * 3 2 1 32 32 H 0.96997 * 119.99749 * 359.97438 * 7 5 4 33 33 H 1.08995 * 109.47544 * 300.27618 * 8 7 5 34 34 H 1.08993 * 109.46994 * 60.27850 * 8 7 5 35 35 H 1.09001 * 109.50232 * 305.52645 * 11 9 8 36 36 H 1.08994 * 109.50015 * 65.62874 * 11 9 8 37 37 H 1.08997 * 109.45981 * 301.34475 * 12 11 9 38 38 H 1.09006 * 109.44935 * 181.37798 * 12 11 9 39 39 H 1.08996 * 109.49937 * 178.68441 * 13 12 11 40 40 H 1.09003 * 109.49837 * 58.58452 * 13 12 11 41 41 H 1.09002 * 109.58785 * 294.84526 * 14 13 12 42 42 H 1.09002 * 109.70561 * 174.49065 * 14 13 12 43 43 H 0.96993 * 119.99608 * 180.02562 * 19 18 16 44 44 H 1.08001 * 119.98695 * 180.27476 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1457 1.1644 0.0000 4 6 3.5261 1.1557 0.0005 5 6 4.2659 2.4327 0.0000 6 8 3.6596 3.4866 -0.0015 7 7 5.6137 2.4306 0.0010 8 6 6.3481 3.6982 -0.0058 9 6 7.8520 3.4163 -0.0100 10 1 8.1200 2.8500 0.8819 11 6 8.6224 4.7402 -0.0321 12 6 10.1187 4.4525 -0.1765 13 6 10.3745 3.7227 -1.4971 14 6 9.6237 2.3874 -1.4916 15 7 8.2049 2.6436 -1.2087 16 6 7.2300 2.1716 -2.0466 17 1 6.4533 2.8343 -2.3987 18 6 7.2402 0.8415 -2.4435 19 7 6.4094 0.4266 -3.3763 20 14 8.4329 -0.3598 -1.6536 21 1 7.8507 -0.8762 -0.3890 22 1 8.6830 -1.4916 -2.5819 23 1 9.7134 0.3335 -1.3623 24 7 4.2006 -0.0039 -0.0039 25 6 3.5638 -1.1442 0.0014 26 6 2.1461 -1.1651 0.0005 27 8 1.5475 -2.2265 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.6111 2.1028 -0.0009 32 1 6.0974 1.5898 0.0025 33 1 6.0827 4.2672 -0.8967 34 1 6.0887 4.2731 0.8831 35 1 8.2850 5.3436 -0.8748 36 1 8.4440 5.2806 0.8975 37 1 10.4503 3.8285 0.6533 38 1 10.6714 5.3921 -0.1679 39 1 11.4428 3.5389 -1.6102 40 1 10.0204 4.3356 -2.3261 41 1 10.0385 1.7381 -0.7206 42 1 9.7212 1.9069 -2.4652 43 1 6.4163 -0.5029 -3.6533 44 1 4.1173 -2.0716 0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024564477.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:07 Heat of formation + Delta-G solvation = -14.681461 kcal Electronic energy + Delta-G solvation = -28111.130297 eV Core-core repulsion = 24257.296208 eV Total energy + Delta-G solvation = -3853.834089 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.95890 -40.68338 -39.45925 -38.48561 -37.04563 -35.65780 -34.74303 -32.58830 -32.35983 -31.47930 -29.44185 -27.77392 -26.54273 -25.60291 -24.92987 -24.08326 -22.37724 -21.71634 -20.91178 -19.72079 -19.31443 -18.31227 -17.96896 -17.58884 -17.21032 -16.73095 -16.69243 -16.52444 -15.63458 -15.57963 -15.24191 -15.16534 -14.95410 -14.70224 -14.53474 -14.49397 -14.26520 -13.80899 -13.67330 -13.45950 -13.31421 -13.11210 -12.76017 -12.68280 -12.62749 -12.15894 -12.04592 -11.98924 -11.56942 -11.32417 -11.24927 -11.15118 -10.97269 -10.46905 -10.38208 -9.83464 -9.29097 -8.37369 -8.01651 -5.60147 -0.57519 0.10899 1.16933 1.47465 1.54625 1.57014 1.80263 2.37431 2.57655 2.70146 3.09079 3.10453 3.28725 3.38353 3.59815 3.86778 4.00581 4.10280 4.19029 4.22888 4.27174 4.31606 4.43135 4.54088 4.62590 4.65746 4.67385 4.78560 4.82607 4.94818 5.00406 5.08806 5.15471 5.25986 5.34125 5.34821 5.39290 5.41182 5.66775 5.72435 6.10119 6.34575 6.40893 6.52600 6.82134 7.13664 7.34201 7.72300 8.22760 9.14399 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.004550 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.350010 B = 6152.853273 C = 7283.787775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.472 5.472 3 C 0.194 3.806 4 C -0.091 4.091 5 C 0.579 3.421 6 O -0.587 6.587 7 N -0.674 5.674 8 C 0.139 3.861 9 C 0.156 3.844 10 H 0.048 0.952 11 C -0.122 4.122 12 C -0.104 4.104 13 C -0.132 4.132 14 C 0.132 3.868 15 N -0.615 5.615 16 C -0.235 4.235 17 H 0.029 0.971 18 C 0.008 3.992 19 N -0.946 5.946 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.322 1.322 23 H -0.204 1.204 24 N -0.380 5.380 25 C 0.020 3.980 26 C 0.475 3.525 27 O -0.554 6.554 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.132 0.868 31 H 0.219 0.781 32 H 0.412 0.588 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.038 0.962 42 H 0.039 0.961 43 H 0.254 0.746 44 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 4.510 11.035 12.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.181 5.181 3 C 0.057 3.943 4 C -0.215 4.215 5 C 0.365 3.635 6 O -0.471 6.471 7 N -0.321 5.321 8 C 0.016 3.984 9 C 0.051 3.949 10 H 0.066 0.934 11 C -0.161 4.161 12 C -0.141 4.141 13 C -0.171 4.171 14 C 0.007 3.993 15 N -0.342 5.342 16 C -0.365 4.365 17 H 0.046 0.954 18 C -0.189 4.189 19 N -0.589 5.589 20 Si 0.719 3.281 21 H -0.208 1.208 22 H -0.251 1.251 23 H -0.128 1.128 24 N -0.096 5.096 25 C -0.169 4.169 26 C 0.274 3.726 27 O -0.433 6.433 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.151 0.849 31 H 0.236 0.764 32 H 0.249 0.751 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -4.010 4.651 10.946 12.550 hybrid contribution -0.327 -1.593 -0.668 1.758 sum -4.336 3.058 10.278 11.567 Atomic orbital electron populations 1.22752 0.72894 1.07459 1.06146 1.45677 1.11862 1.05933 1.54633 1.23473 0.92602 0.91914 0.86320 1.20449 0.90932 0.92684 1.17449 1.17409 0.82829 0.86715 0.76532 1.90683 1.69094 1.32127 1.55187 1.45764 1.05299 1.11088 1.69959 1.21322 0.91324 0.85194 1.00607 1.21050 0.91526 0.93072 0.89229 0.93424 1.21879 0.95899 0.96215 1.02090 1.21368 0.95413 1.00456 0.96907 1.21978 0.99668 0.97191 0.98292 1.21671 0.84220 0.95407 0.97972 1.44436 1.01295 1.63827 1.24648 1.18167 1.05579 0.91263 1.21487 0.95376 1.26121 0.97385 0.98251 0.97181 1.69918 1.40675 1.16086 1.32260 0.86974 0.84038 0.79011 0.78034 1.20780 1.25090 1.12797 1.67635 1.41533 0.98466 1.01919 1.24822 0.89904 0.97563 1.04620 1.18698 0.90626 0.83733 0.79584 1.90891 1.71048 1.28969 1.52417 0.88550 0.88438 0.84936 0.76446 0.75072 0.94055 0.89993 0.93063 0.89552 0.91592 0.90539 0.90826 0.93494 0.94411 0.94199 0.93698 0.78790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.64 10.43 127.77 1.33 1.98 16 2 N -0.47 -11.40 2.97 -671.24 -2.00 -13.40 16 3 C 0.19 5.03 9.90 84.18 0.83 5.86 16 4 C -0.09 -3.23 6.71 41.21 0.28 -2.95 16 5 C 0.58 23.16 7.79 86.71 0.68 23.83 16 6 O -0.59 -24.19 16.28 -3.99 -0.06 -24.25 16 7 N -0.67 -27.64 4.12 -466.22 -1.92 -29.56 16 8 C 0.14 5.15 4.50 86.38 0.39 5.54 16 9 C 0.16 5.43 3.01 44.98 0.14 5.56 16 10 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 11 C -0.12 -3.36 5.37 30.67 0.16 -3.19 16 12 C -0.10 -2.60 5.88 30.62 0.18 -2.42 16 13 C -0.13 -3.98 6.08 30.67 0.19 -3.80 16 14 C 0.13 5.02 4.03 86.36 0.35 5.37 16 15 N -0.62 -26.03 2.41 -675.23 -1.63 -27.66 16 16 C -0.23 -12.20 6.60 84.03 0.55 -11.64 16 17 H 0.03 1.73 7.11 -2.91 -0.02 1.71 16 18 C 0.01 0.45 5.28 84.86 0.45 0.90 16 19 N -0.95 -57.08 13.97 21.65 0.30 -56.78 16 20 Si 0.89 42.02 26.62 68.60 1.83 43.85 16 21 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 22 H -0.32 -16.21 7.11 99.48 0.71 -15.50 16 23 H -0.20 -8.43 3.87 99.48 0.39 -8.04 16 24 N -0.38 -14.51 9.62 -183.47 -1.77 -16.27 16 25 C 0.02 0.67 11.23 85.75 0.96 1.63 16 26 C 0.48 14.81 7.45 85.09 0.63 15.45 16 27 O -0.55 -19.29 16.74 -4.85 -0.08 -19.37 16 28 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.10 1.47 7.46 -2.39 -0.02 1.45 16 30 H 0.13 0.83 8.04 -2.39 -0.02 0.81 16 31 H 0.22 4.16 7.58 -2.91 -0.02 4.13 16 32 H 0.41 18.23 6.63 -92.71 -0.61 17.61 16 33 H 0.04 1.75 7.47 -2.39 -0.02 1.73 16 34 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.04 1.40 6.36 -2.39 -0.02 1.38 16 42 H 0.04 1.70 6.49 -2.39 -0.02 1.68 16 43 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.20 5.94 8.06 -2.91 -0.02 5.92 16 Total: -1.00 -73.46 351.86 1.88 -71.58 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: 0.09 Total: 29.75 kcal Atomic # 6 Polarization: 35.00 SS G_CDS: 7.12 Total: 42.12 kcal Atomic # 7 Polarization: -136.67 SS G_CDS: -7.01 Total: -143.68 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -0.15 Total: -43.63 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.83 Total: 43.85 kcal Total: -73.46 1.88 -71.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024564477.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.899 kcal (2) G-P(sol) polarization free energy of solvation -73.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds