Wall clock time and date at job start Fri Apr 10 2020 18:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28395 * 119.09779 * 2 1 4 4 C 1.31403 * 122.26483 * 180.28120 * 3 2 1 5 5 C 1.47887 * 119.89473 * 179.74138 * 4 3 2 6 6 O 1.21546 * 120.00150 * 179.72151 * 5 4 3 7 7 N 1.34779 * 119.99774 * 359.72580 * 5 4 3 8 8 C 1.46497 * 119.99900 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47311 * 180.02562 * 8 7 5 10 10 H 1.09002 * 109.70198 * 60.46394 * 9 8 7 11 11 C 1.53625 * 109.66726 * 181.06106 * 9 8 7 12 12 C 1.53035 * 109.24166 * 174.54729 * 11 9 8 13 13 C 1.53041 * 109.54138 * 298.51162 * 12 11 9 14 14 C 1.53194 * 109.31316 * 61.36390 * 13 12 11 15 15 N 1.46924 * 109.58600 * 300.11455 * 9 8 7 16 16 C 1.36937 * 120.62878 * 6.62517 * 15 9 8 17 17 H 1.08003 * 120.00058 * 328.35733 * 16 15 9 18 18 C 1.38815 * 120.00040 * 148.63335 * 16 15 9 19 19 N 1.31615 * 119.99740 * 348.54342 * 18 16 15 20 20 Si 1.86798 * 120.00240 * 168.54906 * 18 16 15 21 21 H 1.48508 * 109.47069 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47435 * 119.99634 * 20 18 16 23 23 H 1.48497 * 109.47026 * 239.99893 * 20 18 16 24 24 C 1.41582 * 120.21204 * 359.46483 * 4 3 2 25 25 C 1.36326 * 118.23763 * 0.25724 * 24 4 3 26 26 C 1.34602 * 119.10298 * 179.74833 * 2 1 3 27 27 O 1.21979 * 120.22728 * 0.02562 * 26 2 1 28 28 H 1.09010 * 109.46660 * 270.25485 * 1 2 3 29 29 H 1.08997 * 109.47799 * 30.25072 * 1 2 3 30 30 H 1.09000 * 109.47315 * 150.26078 * 1 2 3 31 31 H 0.97000 * 120.00103 * 359.97438 * 7 5 4 32 32 H 1.08995 * 109.47388 * 59.99437 * 8 7 5 33 33 H 1.09003 * 109.46905 * 299.99548 * 8 7 5 34 34 H 1.09001 * 109.63139 * 54.56025 * 11 9 8 35 35 H 1.08998 * 109.45745 * 294.43517 * 11 9 8 36 36 H 1.09004 * 109.45870 * 178.49126 * 12 11 9 37 37 H 1.09000 * 109.44972 * 58.52335 * 12 11 9 38 38 H 1.09003 * 109.49383 * 301.41709 * 13 12 11 39 39 H 1.09002 * 109.52596 * 181.33408 * 13 12 11 40 40 H 1.08998 * 109.58749 * 185.58079 * 14 13 12 41 41 H 1.09007 * 109.70139 * 65.22284 * 14 13 12 42 42 H 0.97005 * 119.99781 * 179.97438 * 19 18 16 43 43 H 1.08004 * 120.87972 * 180.27343 * 24 4 3 44 44 H 1.08003 * 121.03241 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0894 1.1219 0.0000 4 6 3.4014 1.1945 -0.0055 5 6 4.0665 2.5154 -0.0109 6 8 5.2800 2.5848 -0.0109 7 7 3.3270 3.6422 -0.0159 8 6 3.9858 4.9506 -0.0208 9 6 2.9268 6.0549 -0.0252 10 1 2.3072 5.9733 0.8678 11 6 3.6129 7.4291 -0.0571 12 6 2.5495 8.5205 -0.1986 13 6 1.7923 8.3299 -1.5149 14 6 1.0895 6.9687 -1.5026 15 7 2.0849 5.9250 -1.2223 16 6 2.2215 4.8488 -2.0580 17 1 3.1871 4.3814 -2.1831 18 6 1.1201 4.3622 -2.7487 19 7 -0.0887 4.7797 -2.4377 20 14 1.3536 3.1148 -4.1193 21 1 2.7994 2.8116 -4.2717 22 1 0.6187 1.8685 -3.7850 23 1 0.8286 3.6730 -5.3913 24 6 4.1804 0.0123 -0.0002 25 6 3.5324 -1.1871 0.0052 26 6 2.1197 -1.1761 0.0052 27 8 1.4975 -2.2252 0.0093 28 1 -0.3633 0.0046 1.0278 29 1 -0.3634 0.8877 -0.5177 30 1 -0.3634 -0.8923 -0.5098 31 1 2.3586 3.5867 -0.0163 32 1 4.6088 5.0405 -0.9107 33 1 4.6076 5.0476 0.8693 34 1 4.2980 7.4768 -0.9036 35 1 4.1677 7.5795 0.8689 36 1 3.0304 9.4987 -0.1947 37 1 1.8503 8.4562 0.6350 38 1 2.4947 8.3691 -2.3475 39 1 1.0510 9.1211 -1.6266 40 1 0.6313 6.7853 -2.4744 41 1 0.3217 6.9586 -0.7288 42 1 -0.8583 4.4399 -2.9206 43 1 5.2594 0.0594 -0.0002 44 1 4.0819 -2.1169 0.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024791459.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:10 Heat of formation + Delta-G solvation = 20.122439 kcal Electronic energy + Delta-G solvation = -28216.067817 eV Core-core repulsion = 24363.742939 eV Total energy + Delta-G solvation = -3852.324879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.03651 -39.36671 -37.90452 -37.49155 -34.88644 -34.27669 -33.11448 -31.77192 -30.55982 -29.92194 -28.38363 -26.23879 -25.30880 -24.48716 -23.49052 -22.17775 -21.10599 -20.50361 -19.21712 -18.40423 -17.99031 -16.77501 -16.73782 -16.36522 -15.78112 -15.64003 -15.29177 -14.47923 -14.20740 -14.03091 -13.82451 -13.59314 -13.43985 -13.39302 -13.13050 -12.89144 -12.65380 -12.52233 -12.38500 -12.07119 -11.77852 -11.53074 -11.25089 -11.00643 -10.83550 -10.59775 -10.45060 -10.33155 -10.17877 -10.02973 -9.99236 -9.70669 -9.52614 -9.37937 -8.70182 -8.56860 -8.28386 -6.69737 -5.88763 -3.35962 0.48329 1.21882 2.16350 2.97985 3.25027 3.35333 3.38592 3.48271 3.73397 4.03866 4.37345 4.66653 4.75372 5.03337 5.20016 5.23289 5.27911 5.28651 5.46897 5.55735 5.61001 5.62471 5.64006 5.68071 5.84577 5.92930 5.98254 6.02957 6.10060 6.24433 6.33404 6.36884 6.56211 6.67868 6.70827 6.82571 6.91710 7.03283 7.36369 7.50414 7.64585 7.73748 7.93020 8.17155 8.36302 8.64303 9.11817 9.72798 10.30748 11.17466 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014153 B = 0.004910 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.861379 B = 5700.876871 C = 6718.201642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.334 5.334 3 N -0.165 5.165 4 C 0.019 3.981 5 C 0.578 3.422 6 O -0.552 6.552 7 N -0.670 5.670 8 C 0.132 3.868 9 C 0.159 3.841 10 H 0.034 0.966 11 C -0.127 4.127 12 C -0.107 4.107 13 C -0.144 4.144 14 C 0.173 3.827 15 N -0.589 5.589 16 C -0.249 4.249 17 H 0.070 0.930 18 C 0.014 3.986 19 N -0.897 5.897 20 Si 0.886 3.114 21 H -0.277 1.277 22 H -0.291 1.291 23 H -0.288 1.288 24 C -0.026 4.026 25 C -0.202 4.202 26 C 0.478 3.522 27 O -0.536 6.536 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.424 0.576 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.018 0.982 42 H 0.253 0.747 43 H 0.162 0.838 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.650 -2.280 6.451 7.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.156 5.156 3 N 0.005 4.995 4 C -0.152 4.152 5 C 0.360 3.640 6 O -0.430 6.430 7 N -0.320 5.320 8 C 0.008 3.992 9 C 0.052 3.948 10 H 0.051 0.949 11 C -0.166 4.166 12 C -0.145 4.145 13 C -0.184 4.184 14 C 0.047 3.953 15 N -0.313 5.313 16 C -0.378 4.378 17 H 0.087 0.913 18 C -0.186 4.186 19 N -0.541 5.541 20 Si 0.716 3.284 21 H -0.202 1.202 22 H -0.218 1.218 23 H -0.215 1.215 24 C -0.050 4.050 25 C -0.232 4.232 26 C 0.277 3.723 27 O -0.415 6.415 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.264 0.736 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.106 0.894 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.180 0.820 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.161 -2.366 6.377 7.500 hybrid contribution 0.093 -1.224 -0.938 1.545 sum 3.254 -3.591 5.439 7.285 Atomic orbital electron populations 1.22289 0.73382 1.06117 1.04630 1.46742 1.10088 1.02612 1.56151 1.71296 1.11222 1.11984 1.05007 1.21943 0.88105 0.96647 1.08515 1.17157 0.86244 0.82442 0.78151 1.90756 1.12760 1.86565 1.52907 1.45955 1.12110 1.04489 1.69473 1.21402 0.95252 0.81389 1.01153 1.20834 0.91269 0.91403 0.91264 0.94876 1.22008 0.97896 0.96173 1.00567 1.21361 0.97669 0.96997 0.98485 1.22199 0.99321 1.00294 0.96541 1.20791 0.89448 0.83503 1.01533 1.44089 1.41313 1.22833 1.23053 1.19215 0.93274 1.06448 1.18911 0.91280 1.25015 0.95207 0.98185 1.00147 1.69985 0.97157 1.45595 1.41362 0.86463 0.77819 0.81340 0.82741 1.20241 1.21798 1.21467 1.22262 1.03001 0.90424 0.89298 1.22614 0.92691 1.00290 1.07567 1.18113 0.90166 0.84011 0.79966 1.90941 1.69400 1.29518 1.51633 0.89795 0.87659 0.88233 0.73608 0.91108 0.92129 0.92019 0.93022 0.93744 0.92889 0.92856 0.93583 0.89442 0.96391 0.93683 0.81996 0.81642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 10.58 59.85 0.63 1.60 16 2 N -0.33 -5.20 3.62 -70.15 -0.25 -5.46 16 3 N -0.16 -2.74 10.11 33.42 0.34 -2.40 16 4 C 0.02 0.31 6.84 -82.83 -0.57 -0.26 16 5 C 0.58 10.38 7.81 -12.31 -0.10 10.29 16 6 O -0.55 -10.68 16.38 5.33 0.09 -10.60 16 7 N -0.67 -12.29 3.83 -61.24 -0.23 -12.52 16 8 C 0.13 2.32 4.44 -4.04 -0.02 2.30 16 9 C 0.16 2.90 3.03 -67.38 -0.20 2.69 16 10 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 11 C -0.13 -2.00 5.40 -26.39 -0.14 -2.14 16 12 C -0.11 -1.67 5.88 -26.69 -0.16 -1.83 16 13 C -0.14 -2.57 6.08 -26.61 -0.16 -2.73 16 14 C 0.17 3.73 5.25 -3.71 -0.02 3.72 16 15 N -0.59 -12.81 2.97 -164.52 -0.49 -13.30 16 16 C -0.25 -5.95 6.94 -15.06 -0.10 -6.06 16 17 H 0.07 1.71 5.87 -52.48 -0.31 1.40 16 18 C 0.01 0.35 5.03 -17.43 -0.09 0.26 16 19 N -0.90 -23.33 11.08 55.49 0.61 -22.71 16 20 Si 0.89 20.76 29.57 -169.99 -5.03 15.73 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 24 C -0.03 -0.35 9.67 -39.00 -0.38 -0.73 16 25 C -0.20 -2.64 10.11 -39.12 -0.40 -3.04 16 26 C 0.48 7.53 7.47 -15.18 -0.11 7.41 16 27 O -0.54 -9.50 16.62 4.94 0.08 -9.42 16 28 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 29 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.10 1.22 7.36 -51.93 -0.38 0.84 16 31 H 0.42 8.32 6.69 -40.82 -0.27 8.05 16 32 H 0.07 1.35 7.44 -51.93 -0.39 0.97 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 2.16 6.11 -51.93 -0.32 1.84 16 41 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 42 H 0.25 6.49 8.31 -40.82 -0.34 6.15 16 43 H 0.16 1.84 7.72 -52.48 -0.41 1.44 16 44 H 0.17 1.69 8.06 -52.48 -0.42 1.26 16 LS Contribution 357.14 15.07 5.38 5.38 Total: -1.00 -28.90 357.14 -7.59 -36.49 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.28 Total: 7.31 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: -1.81 Total: 11.49 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.02 Total: -56.39 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.17 Total: -20.02 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.90 -7.59 -36.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024791459.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.612 kcal (2) G-P(sol) polarization free energy of solvation -28.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds