Wall clock time and date at job start Fri Apr 10 2020 18:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28395 * 119.09779 * 2 1 4 4 C 1.31403 * 122.26483 * 180.28120 * 3 2 1 5 5 C 1.47887 * 119.89473 * 179.74138 * 4 3 2 6 6 O 1.21546 * 120.00150 * 179.72151 * 5 4 3 7 7 N 1.34779 * 119.99774 * 359.72580 * 5 4 3 8 8 C 1.46497 * 119.99900 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47311 * 180.02562 * 8 7 5 10 10 H 1.09002 * 109.70198 * 60.46394 * 9 8 7 11 11 C 1.53625 * 109.66726 * 181.06106 * 9 8 7 12 12 C 1.53035 * 109.24166 * 174.54729 * 11 9 8 13 13 C 1.53041 * 109.54138 * 298.51162 * 12 11 9 14 14 C 1.53194 * 109.31316 * 61.36390 * 13 12 11 15 15 N 1.46924 * 109.58600 * 300.11455 * 9 8 7 16 16 C 1.36937 * 120.62878 * 6.62517 * 15 9 8 17 17 H 1.08003 * 120.00058 * 328.35733 * 16 15 9 18 18 C 1.38815 * 120.00040 * 148.63335 * 16 15 9 19 19 N 1.31615 * 119.99740 * 348.54342 * 18 16 15 20 20 Si 1.86798 * 120.00240 * 168.54906 * 18 16 15 21 21 H 1.48508 * 109.47069 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47435 * 119.99634 * 20 18 16 23 23 H 1.48497 * 109.47026 * 239.99893 * 20 18 16 24 24 C 1.41582 * 120.21204 * 359.46483 * 4 3 2 25 25 C 1.36326 * 118.23763 * 0.25724 * 24 4 3 26 26 C 1.34602 * 119.10298 * 179.74833 * 2 1 3 27 27 O 1.21979 * 120.22728 * 0.02562 * 26 2 1 28 28 H 1.09010 * 109.46660 * 270.25485 * 1 2 3 29 29 H 1.08997 * 109.47799 * 30.25072 * 1 2 3 30 30 H 1.09000 * 109.47315 * 150.26078 * 1 2 3 31 31 H 0.97000 * 120.00103 * 359.97438 * 7 5 4 32 32 H 1.08995 * 109.47388 * 59.99437 * 8 7 5 33 33 H 1.09003 * 109.46905 * 299.99548 * 8 7 5 34 34 H 1.09001 * 109.63139 * 54.56025 * 11 9 8 35 35 H 1.08998 * 109.45745 * 294.43517 * 11 9 8 36 36 H 1.09004 * 109.45870 * 178.49126 * 12 11 9 37 37 H 1.09000 * 109.44972 * 58.52335 * 12 11 9 38 38 H 1.09003 * 109.49383 * 301.41709 * 13 12 11 39 39 H 1.09002 * 109.52596 * 181.33408 * 13 12 11 40 40 H 1.08998 * 109.58749 * 185.58079 * 14 13 12 41 41 H 1.09007 * 109.70139 * 65.22284 * 14 13 12 42 42 H 0.97005 * 119.99781 * 179.97438 * 19 18 16 43 43 H 1.08004 * 120.87972 * 180.27343 * 24 4 3 44 44 H 1.08003 * 121.03241 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0894 1.1219 0.0000 4 6 3.4014 1.1945 -0.0055 5 6 4.0665 2.5154 -0.0109 6 8 5.2800 2.5848 -0.0109 7 7 3.3270 3.6422 -0.0159 8 6 3.9858 4.9506 -0.0208 9 6 2.9268 6.0549 -0.0252 10 1 2.3072 5.9733 0.8678 11 6 3.6129 7.4291 -0.0571 12 6 2.5495 8.5205 -0.1986 13 6 1.7923 8.3299 -1.5149 14 6 1.0895 6.9687 -1.5026 15 7 2.0849 5.9250 -1.2223 16 6 2.2215 4.8488 -2.0580 17 1 3.1871 4.3814 -2.1831 18 6 1.1201 4.3622 -2.7487 19 7 -0.0887 4.7797 -2.4377 20 14 1.3536 3.1148 -4.1193 21 1 2.7994 2.8116 -4.2717 22 1 0.6187 1.8685 -3.7850 23 1 0.8286 3.6730 -5.3913 24 6 4.1804 0.0123 -0.0002 25 6 3.5324 -1.1871 0.0052 26 6 2.1197 -1.1761 0.0052 27 8 1.4975 -2.2252 0.0093 28 1 -0.3633 0.0046 1.0278 29 1 -0.3634 0.8877 -0.5177 30 1 -0.3634 -0.8923 -0.5098 31 1 2.3586 3.5867 -0.0163 32 1 4.6088 5.0405 -0.9107 33 1 4.6076 5.0476 0.8693 34 1 4.2980 7.4768 -0.9036 35 1 4.1677 7.5795 0.8689 36 1 3.0304 9.4987 -0.1947 37 1 1.8503 8.4562 0.6350 38 1 2.4947 8.3691 -2.3475 39 1 1.0510 9.1211 -1.6266 40 1 0.6313 6.7853 -2.4744 41 1 0.3217 6.9586 -0.7288 42 1 -0.8583 4.4399 -2.9206 43 1 5.2594 0.0594 -0.0002 44 1 4.0819 -2.1169 0.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024791459.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:10 Heat of formation + Delta-G solvation = 2.045944 kcal Electronic energy + Delta-G solvation = -28216.851673 eV Core-core repulsion = 24363.742939 eV Total energy + Delta-G solvation = -3853.108734 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.24117 -40.79849 -39.35792 -38.83242 -36.05634 -35.69817 -34.86330 -33.04967 -32.02162 -31.57130 -29.54269 -27.73816 -26.81999 -25.85588 -24.67515 -23.75888 -22.52382 -21.93572 -20.71825 -19.75028 -19.22330 -18.24357 -17.95847 -17.79417 -17.31438 -17.00469 -16.69987 -16.13979 -15.74388 -15.43676 -15.26757 -14.80902 -14.76759 -14.59435 -14.52581 -14.33703 -14.03303 -13.77336 -13.64260 -13.55948 -13.30998 -12.88582 -12.80144 -12.74867 -12.53969 -12.29197 -12.02857 -11.75865 -11.53420 -11.48815 -11.39676 -11.07605 -11.03285 -10.85426 -10.49696 -9.96622 -9.68284 -8.50869 -7.80118 -5.26596 -0.65584 -0.01809 1.01049 1.33766 1.42352 1.46013 1.69279 2.15659 2.45094 2.47691 2.83595 3.35903 3.55649 3.61964 3.67788 3.77948 4.04498 4.23492 4.26301 4.27544 4.31652 4.48744 4.49695 4.53392 4.59619 4.59917 4.70941 4.76472 4.84626 4.91705 4.93325 5.05389 5.19308 5.28061 5.33291 5.40862 5.52234 5.58395 5.69826 5.78647 5.90478 6.29379 6.47896 6.57299 6.84490 7.17618 7.23735 7.92424 8.45343 9.23887 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014153 B = 0.004910 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.861379 B = 5700.876871 C = 6718.201642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.337 5.337 3 N -0.184 5.184 4 C 0.011 3.989 5 C 0.579 3.421 6 O -0.566 6.566 7 N -0.676 5.676 8 C 0.135 3.865 9 C 0.157 3.843 10 H 0.034 0.966 11 C -0.121 4.121 12 C -0.103 4.103 13 C -0.136 4.136 14 C 0.177 3.823 15 N -0.601 5.601 16 C -0.228 4.228 17 H 0.063 0.937 18 C -0.024 4.024 19 N -0.920 5.920 20 Si 0.923 3.077 21 H -0.280 1.280 22 H -0.296 1.296 23 H -0.296 1.296 24 C -0.023 4.023 25 C -0.187 4.187 26 C 0.467 3.533 27 O -0.561 6.561 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.417 0.583 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.000 1.000 42 H 0.246 0.754 43 H 0.186 0.814 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.315 -1.896 7.648 9.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.158 5.158 3 N -0.014 5.014 4 C -0.160 4.160 5 C 0.362 3.638 6 O -0.445 6.445 7 N -0.325 5.325 8 C 0.011 3.989 9 C 0.052 3.948 10 H 0.052 0.948 11 C -0.160 4.160 12 C -0.141 4.141 13 C -0.175 4.175 14 C 0.052 3.948 15 N -0.326 5.326 16 C -0.359 4.359 17 H 0.080 0.920 18 C -0.220 4.220 19 N -0.566 5.566 20 Si 0.755 3.245 21 H -0.206 1.206 22 H -0.223 1.223 23 H -0.223 1.223 24 C -0.047 4.047 25 C -0.217 4.217 26 C 0.268 3.732 27 O -0.442 6.442 28 H 0.124 0.876 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.256 0.744 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.018 0.982 42 H 0.056 0.944 43 H 0.203 0.797 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 4.853 -1.956 7.585 9.214 hybrid contribution -0.410 -1.316 -1.275 1.878 sum 4.442 -3.272 6.310 8.382 Atomic orbital electron populations 1.22450 0.72389 1.05883 1.06086 1.46922 1.10863 1.02438 1.55606 1.71266 1.11717 1.12595 1.05859 1.21938 0.88438 0.96823 1.08794 1.17343 0.86093 0.82888 0.77500 1.90740 1.13244 1.86926 1.53552 1.46014 1.11751 1.05096 1.69655 1.21426 0.94979 0.80969 1.01488 1.21017 0.90959 0.93371 0.89502 0.94830 1.21958 0.97798 0.94228 1.02023 1.21347 0.97510 0.98354 0.96863 1.22055 0.99439 0.98055 0.97930 1.20594 0.89534 0.85778 0.98896 1.44268 1.41662 1.22378 1.24249 1.19214 0.92493 1.06030 1.18171 0.91964 1.25340 0.95345 0.99618 1.01719 1.70076 0.97346 1.46879 1.42313 0.85879 0.77124 0.80199 0.81331 1.20559 1.22312 1.22303 1.22411 1.03894 0.89293 0.89063 1.22902 0.91380 1.01483 1.05886 1.18564 0.91243 0.83615 0.79754 1.90929 1.70074 1.30153 1.53078 0.87569 0.88489 0.87767 0.74436 0.92708 0.89697 0.92587 0.89785 0.90884 0.92514 0.93619 0.92040 0.93010 0.98166 0.94378 0.79651 0.78437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.82 10.58 127.77 1.35 3.17 16 2 N -0.34 -10.31 3.62 -494.05 -1.79 -12.10 16 3 N -0.18 -6.04 10.11 -48.19 -0.49 -6.53 16 4 C 0.01 0.34 6.84 42.59 0.29 0.63 16 5 C 0.58 20.24 7.81 86.80 0.68 20.92 16 6 O -0.57 -21.06 16.38 -3.86 -0.06 -21.12 16 7 N -0.68 -24.38 3.83 -465.94 -1.78 -26.16 16 8 C 0.13 4.55 4.44 86.38 0.38 4.93 16 9 C 0.16 5.48 3.03 45.12 0.14 5.62 16 10 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 11 C -0.12 -3.43 5.40 30.82 0.17 -3.27 16 12 C -0.10 -2.88 5.88 30.62 0.18 -2.70 16 13 C -0.14 -4.62 6.08 30.67 0.19 -4.44 16 14 C 0.18 7.72 5.25 86.36 0.45 8.18 16 15 N -0.60 -26.05 2.97 -674.41 -2.00 -28.05 16 16 C -0.23 -11.00 6.94 84.03 0.58 -10.42 16 17 H 0.06 3.09 5.87 -2.91 -0.02 3.07 16 18 C -0.02 -1.20 5.03 84.86 0.43 -0.78 16 19 N -0.92 -49.19 11.08 21.65 0.24 -48.96 16 20 Si 0.92 43.40 29.57 68.60 2.03 45.43 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 23 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 24 C -0.02 -0.58 9.67 22.65 0.22 -0.36 16 25 C -0.19 -4.46 10.11 22.57 0.23 -4.24 16 26 C 0.47 14.16 7.47 85.01 0.63 14.80 16 27 O -0.56 -19.37 16.62 -5.25 -0.09 -19.46 16 28 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.10 2.55 7.36 -2.39 -0.02 2.53 16 31 H 0.42 16.40 6.69 -92.71 -0.62 15.78 16 32 H 0.05 2.04 7.44 -2.39 -0.02 2.02 16 33 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.05 2.62 6.11 -2.39 -0.01 2.61 16 41 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 42 H 0.25 13.08 8.31 -92.70 -0.77 12.31 16 43 H 0.19 3.68 7.72 -2.91 -0.02 3.66 16 44 H 0.20 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -62.53 357.14 2.38 -60.15 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.40 Total: 24.76 kcal Atomic # 6 Polarization: 26.13 SS G_CDS: 5.92 Total: 32.05 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -5.82 Total: -121.80 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -0.15 Total: -40.58 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -62.53 2.38 -60.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024791459.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.191 kcal (2) G-P(sol) polarization free energy of solvation -62.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds