Wall clock time and date at job start Fri Apr 10 2020 18:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28387 * 119.09864 * 2 1 4 4 C 1.31404 * 122.26714 * 179.97438 * 3 2 1 5 5 C 1.47882 * 119.89966 * 179.97438 * 4 3 2 6 6 O 1.21551 * 120.00544 * 180.02562 * 5 4 3 7 7 N 1.34782 * 119.99492 * 0.02562 * 5 4 3 8 8 C 1.46498 * 119.99890 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47235 * 179.97438 * 8 7 5 10 10 H 1.09006 * 109.70323 * 299.84422 * 9 8 7 11 11 C 1.52763 * 109.51270 * 179.73488 * 9 8 7 12 12 C 1.53043 * 109.38669 * 185.70626 * 11 9 8 13 13 C 1.53045 * 109.53865 * 61.23142 * 12 11 9 14 14 C 1.53192 * 109.31484 * 298.64254 * 13 12 11 15 15 N 1.46924 * 108.77816 * 54.63082 * 14 13 12 16 16 C 1.36939 * 120.62866 * 126.37044 * 15 14 13 17 17 H 1.08002 * 119.99831 * 211.14619 * 16 15 14 18 18 C 1.38802 * 119.99929 * 31.14740 * 16 15 14 19 19 N 1.31622 * 120.00531 * 13.92903 * 18 16 15 20 20 Si 1.86801 * 119.99865 * 193.92844 * 18 16 15 21 21 H 1.48501 * 109.47275 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.47297 * 299.99878 * 20 18 16 23 23 H 1.48500 * 109.47323 * 59.99934 * 20 18 16 24 24 C 1.41579 * 120.21107 * 0.27183 * 4 3 2 25 25 C 1.36335 * 118.23604 * 359.47666 * 24 4 3 26 26 C 1.34607 * 119.10334 * 180.02562 * 2 1 3 27 27 O 1.21988 * 120.22314 * 359.97438 * 26 2 1 28 28 H 1.08999 * 109.46993 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46939 * 120.00264 * 1 2 3 30 30 H 1.09004 * 109.46799 * 240.00382 * 1 2 3 31 31 H 0.97001 * 120.00331 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.47588 * 59.99533 * 8 7 5 33 33 H 1.08997 * 109.46833 * 299.99815 * 8 7 5 34 34 H 1.08994 * 109.56671 * 65.66380 * 11 9 8 35 35 H 1.09007 * 109.35544 * 305.61238 * 11 9 8 36 36 H 1.09000 * 109.45433 * 301.21887 * 12 11 9 37 37 H 1.08994 * 109.44876 * 181.24731 * 12 11 9 38 38 H 1.08996 * 109.50059 * 178.68369 * 13 12 11 39 39 H 1.09004 * 109.49292 * 58.58629 * 13 12 11 40 40 H 1.08999 * 109.58093 * 294.83937 * 14 13 12 41 41 H 1.09004 * 109.70054 * 174.49106 * 14 13 12 42 42 H 0.96996 * 120.00242 * 179.97438 * 19 18 16 43 43 H 1.08001 * 120.88698 * 179.71985 * 24 4 3 44 44 H 1.07999 * 121.03293 * 180.23245 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0894 1.1218 0.0000 4 6 3.4014 1.1945 0.0005 5 6 4.0666 2.5152 -0.0001 6 8 5.2801 2.5847 -0.0001 7 7 3.3271 3.6421 -0.0006 8 6 3.9860 4.9505 -0.0007 9 6 2.9270 6.0548 -0.0020 10 1 2.3048 5.9662 -0.8926 11 6 3.6131 7.4197 0.0047 12 6 2.5572 8.5183 0.1469 13 6 1.8122 8.3437 1.4723 14 6 1.1018 6.9864 1.4793 15 7 2.0887 5.9347 1.1986 16 6 2.2283 4.8658 2.0431 17 1 3.1919 4.3921 2.1598 18 6 1.1315 4.3910 2.7489 19 7 -0.0825 4.7738 2.4142 20 14 1.3784 3.2088 4.1740 21 1 0.0595 2.8536 4.7567 22 1 2.0507 1.9781 3.6854 23 1 2.2213 3.8542 5.2123 24 6 4.1804 0.0122 -0.0047 25 6 3.5323 -1.1872 0.0007 26 6 2.1197 -1.1761 -0.0005 27 8 1.4974 -2.2253 -0.0005 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 -0.3633 -0.5138 0.8901 31 1 2.3587 3.5867 -0.0010 32 1 4.6088 5.0438 -0.8903 33 1 4.6079 5.0441 0.8895 34 1 4.1590 7.5584 -0.9284 35 1 4.3070 7.4712 0.8438 36 1 1.8493 8.4506 -0.6792 37 1 3.0436 9.4936 0.1295 38 1 1.0763 9.1400 1.5838 39 1 2.5230 8.3864 2.2975 40 1 0.3277 6.9753 0.7120 41 1 0.6506 6.8128 2.4562 42 1 -0.8490 4.4417 2.9073 43 1 5.2593 0.0592 -0.0089 44 1 4.0818 -2.1170 0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024791460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:12 Heat of formation + Delta-G solvation = 1.623342 kcal Electronic energy + Delta-G solvation = -28202.827235 eV Core-core repulsion = 24349.700175 eV Total energy + Delta-G solvation = -3853.127060 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.23212 -40.79983 -39.37857 -38.82739 -36.05353 -35.69594 -34.86495 -33.05261 -32.02238 -31.60925 -29.53107 -27.72278 -26.81700 -25.85538 -24.68054 -23.78185 -22.52228 -21.93503 -20.70885 -19.73835 -19.21803 -18.23229 -17.96304 -17.79011 -17.30820 -16.99421 -16.70093 -16.14393 -15.75205 -15.44752 -15.26821 -14.81009 -14.76283 -14.56149 -14.50631 -14.34557 -14.03871 -13.77402 -13.60245 -13.57840 -13.31691 -12.84598 -12.81171 -12.78130 -12.55368 -12.30057 -12.05243 -11.74896 -11.53627 -11.48894 -11.39958 -11.07402 -11.03141 -10.84883 -10.48818 -9.96678 -9.67959 -8.51175 -7.80343 -5.25072 -0.64912 -0.01532 1.01877 1.36895 1.42820 1.45321 1.69436 2.16130 2.45640 2.48839 2.85167 3.35800 3.55864 3.62121 3.68003 3.78470 4.03697 4.23722 4.25542 4.27217 4.32491 4.48408 4.50001 4.53914 4.59563 4.60480 4.71027 4.76758 4.84758 4.91742 4.93247 5.05304 5.19203 5.27709 5.32864 5.40793 5.51694 5.58580 5.68047 5.78806 5.88878 6.30136 6.47465 6.57438 6.84960 7.17793 7.23897 7.92852 8.45959 9.24209 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014027 B = 0.004897 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.691200 B = 5716.035308 C = 6729.379749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.336 5.336 3 N -0.183 5.183 4 C 0.010 3.990 5 C 0.579 3.421 6 O -0.566 6.566 7 N -0.676 5.676 8 C 0.135 3.865 9 C 0.158 3.842 10 H 0.033 0.967 11 C -0.122 4.122 12 C -0.103 4.103 13 C -0.136 4.136 14 C 0.178 3.822 15 N -0.600 5.600 16 C -0.232 4.232 17 H 0.062 0.938 18 C -0.022 4.022 19 N -0.918 5.918 20 Si 0.927 3.073 21 H -0.296 1.296 22 H -0.290 1.290 23 H -0.288 1.288 24 C -0.024 4.024 25 C -0.189 4.189 26 C 0.467 3.533 27 O -0.560 6.560 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.417 0.583 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.001 0.999 41 H 0.048 0.952 42 H 0.247 0.753 43 H 0.186 0.814 44 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.181 -1.790 -7.688 9.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.158 5.158 3 N -0.014 5.014 4 C -0.161 4.161 5 C 0.362 3.638 6 O -0.445 6.445 7 N -0.325 5.325 8 C 0.011 3.989 9 C 0.052 3.948 10 H 0.051 0.949 11 C -0.161 4.161 12 C -0.141 4.141 13 C -0.175 4.175 14 C 0.053 3.947 15 N -0.325 5.325 16 C -0.363 4.363 17 H 0.080 0.920 18 C -0.219 4.219 19 N -0.564 5.564 20 Si 0.758 3.242 21 H -0.222 1.222 22 H -0.217 1.217 23 H -0.215 1.215 24 C -0.047 4.047 25 C -0.218 4.218 26 C 0.268 3.732 27 O -0.441 6.441 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.108 0.892 31 H 0.256 0.744 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.019 0.981 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.203 0.797 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 4.697 -1.852 -7.623 9.144 hybrid contribution -0.350 -1.308 1.324 1.894 sum 4.348 -3.161 -6.299 8.281 Atomic orbital electron populations 1.22460 0.72252 1.06416 1.05405 1.46969 1.10896 1.02391 1.55515 1.71287 1.11733 1.12584 1.05759 1.21928 0.88479 0.96820 1.08889 1.17343 0.86092 0.82895 0.77472 1.90739 1.13243 1.86942 1.53580 1.46005 1.11739 1.05077 1.69668 1.21440 0.94984 0.80973 1.01487 1.20826 0.91023 0.93427 0.89473 0.94929 1.21823 0.97896 0.94306 1.02086 1.21346 0.97576 0.98350 0.96783 1.22054 0.99481 0.98035 0.97926 1.20566 0.89662 0.85767 0.98711 1.44227 1.42222 1.22346 1.23675 1.19128 0.92698 1.06771 1.17680 0.92025 1.25316 0.95304 0.99666 1.01648 1.70076 0.97217 1.47962 1.41177 0.85995 0.76028 0.80125 0.82051 1.22242 1.21667 1.21489 1.22409 1.03875 0.89324 0.89071 1.22904 0.91450 1.01464 1.05968 1.18548 0.91206 0.83601 0.79856 1.90934 1.70119 1.30143 1.52953 0.87283 0.87485 0.89151 0.74444 0.89711 0.92698 0.89702 0.92605 0.92488 0.90846 0.91977 0.93604 0.98096 0.93312 0.94358 0.79692 0.78480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.86 10.21 127.77 1.30 3.16 16 2 N -0.34 -10.29 3.62 -494.05 -1.79 -12.08 16 3 N -0.18 -6.03 10.05 -48.20 -0.48 -6.52 16 4 C 0.01 0.30 6.84 42.59 0.29 0.59 16 5 C 0.58 20.35 7.81 86.80 0.68 21.02 16 6 O -0.57 -21.15 16.38 -3.87 -0.06 -21.21 16 7 N -0.68 -24.42 3.83 -465.94 -1.78 -26.20 16 8 C 0.13 4.54 4.42 86.38 0.38 4.93 16 9 C 0.16 5.51 2.99 44.83 0.13 5.64 16 10 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 11 C -0.12 -3.46 5.35 30.53 0.16 -3.29 16 12 C -0.10 -2.87 5.89 30.62 0.18 -2.69 16 13 C -0.14 -4.61 6.08 30.67 0.19 -4.42 16 14 C 0.18 7.74 5.27 86.36 0.46 8.20 16 15 N -0.60 -25.99 2.98 -676.03 -2.01 -28.00 16 16 C -0.23 -11.19 6.97 84.03 0.59 -10.60 16 17 H 0.06 3.05 5.85 -2.91 -0.02 3.03 16 18 C -0.02 -1.14 4.97 84.86 0.42 -0.72 16 19 N -0.92 -49.08 11.23 21.65 0.24 -48.83 16 20 Si 0.93 43.50 29.58 68.60 2.03 45.52 16 21 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 C -0.02 -0.59 9.67 22.65 0.22 -0.37 16 25 C -0.19 -4.56 10.11 22.57 0.23 -4.33 16 26 C 0.47 14.24 7.47 85.01 0.64 14.87 16 27 O -0.56 -19.44 17.07 -5.27 -0.09 -19.53 16 28 H 0.11 2.74 8.05 -2.39 -0.02 2.72 16 29 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 31 H 0.42 16.42 6.72 -92.71 -0.62 15.80 16 32 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.05 2.04 7.42 -2.39 -0.02 2.02 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.05 2.46 6.19 -2.38 -0.01 2.44 16 42 H 0.25 13.15 8.31 -92.71 -0.77 12.38 16 43 H 0.19 3.73 7.72 -2.91 -0.02 3.71 16 44 H 0.20 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -62.66 357.98 2.31 -60.35 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.40 Total: 24.50 kcal Atomic # 6 Polarization: 26.13 SS G_CDS: 5.86 Total: 32.00 kcal Atomic # 7 Polarization: -115.81 SS G_CDS: -5.82 Total: -121.63 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -0.15 Total: -40.74 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -62.66 2.31 -60.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024791460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.973 kcal (2) G-P(sol) polarization free energy of solvation -62.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds