Wall clock time and date at job start Fri Apr 10 2020 18:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 119.89420 * 2 1 4 4 N 1.30438 * 121.82467 * 179.70226 * 3 2 1 5 5 C 1.34322 * 121.47610 * 0.57261 * 4 3 2 6 6 C 1.48554 * 120.20741 * 179.69646 * 5 4 3 7 7 O 1.21466 * 119.99940 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00297 * 0.02562 * 6 5 4 9 9 C 1.46501 * 120.00270 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.47249 * 275.00720 * 9 8 6 11 11 C 1.53002 * 109.46935 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47093 * 59.99982 * 11 10 9 13 13 N 1.46499 * 109.46924 * 180.02562 * 12 11 10 14 14 C 1.36941 * 119.99754 * 274.99410 * 13 12 11 15 15 H 1.07999 * 119.99642 * 0.02562 * 14 13 12 16 16 C 1.38812 * 120.00450 * 179.97438 * 14 13 12 17 17 N 1.31628 * 119.99692 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00532 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46679 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47308 * 120.00056 * 18 16 14 21 21 H 1.48495 * 109.46891 * 240.00187 * 18 16 14 22 22 C 1.53000 * 109.47199 * 299.99507 * 12 11 10 23 23 C 1.52999 * 109.47407 * 155.00547 * 9 8 6 24 24 C 1.37926 * 119.58051 * 359.71873 * 5 4 3 25 25 C 1.34984 * 119.89450 * 180.26672 * 2 1 3 26 26 O 1.21907 * 120.71043 * 0.02613 * 25 2 1 27 27 H 1.09002 * 109.47391 * 269.73051 * 1 2 3 28 28 H 1.09001 * 109.46813 * 149.73108 * 1 2 3 29 29 H 1.09004 * 109.47041 * 29.73235 * 1 2 3 30 30 H 1.08003 * 119.08998 * 359.97385 * 3 2 1 31 31 H 0.96999 * 120.00191 * 0.02562 * 8 6 5 32 32 H 1.09001 * 109.46956 * 35.00161 * 9 8 6 33 33 H 1.09001 * 109.46685 * 299.99606 * 10 9 8 34 34 H 1.08991 * 109.47248 * 59.99830 * 10 9 8 35 35 H 1.08996 * 109.46883 * 299.99717 * 11 10 9 36 36 H 1.08995 * 109.46887 * 179.97438 * 11 10 9 37 37 H 1.08996 * 109.47472 * 60.00096 * 12 11 10 38 38 H 0.96991 * 120.00652 * 94.99866 * 13 12 11 39 39 H 0.96998 * 119.99827 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.47389 * 300.00640 * 22 12 11 41 41 H 1.08991 * 109.47203 * 180.02562 * 22 12 11 42 42 H 1.09008 * 109.47049 * 300.00241 * 23 9 8 43 43 H 1.08996 * 109.47019 * 59.99612 * 23 9 8 44 44 H 1.07995 * 120.83544 * 180.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1367 1.1684 0.0000 4 7 3.4403 1.2124 0.0058 5 6 4.1799 0.0911 0.0005 6 6 5.6631 0.1741 0.0005 7 8 6.3283 -0.8423 -0.0047 8 7 6.2708 1.3770 0.0063 9 6 7.7336 1.4588 0.0057 10 6 8.2508 1.3542 1.4419 11 6 9.7785 1.4390 1.4412 12 6 10.2148 2.7757 0.8380 13 7 11.6775 2.8566 0.8367 14 6 12.3400 3.2937 1.9527 15 1 11.7841 3.5784 2.8338 16 6 13.7260 3.3699 1.9518 17 7 14.4036 3.0225 0.8781 18 14 14.6298 3.9655 3.4743 19 1 13.6460 4.2917 4.5379 20 1 15.5438 2.8989 3.9563 21 1 15.4178 5.1786 3.1392 22 6 9.6976 2.8803 -0.5982 23 6 8.1694 2.7957 -0.5972 24 6 3.5535 -1.1377 -0.0053 25 6 2.1378 -1.1702 -0.0054 26 8 1.5394 -2.2323 -0.0109 27 1 -0.3634 -0.0048 1.0276 28 1 -0.3633 -0.8876 -0.5180 29 1 -0.3633 0.8924 -0.5097 30 1 1.5802 2.0940 -0.0004 31 1 5.7398 2.1887 0.0108 32 1 8.1429 0.6416 -0.5882 33 1 7.8415 2.1714 2.0358 34 1 7.9404 0.4018 1.8714 35 1 10.1874 0.6216 0.8473 36 1 10.1469 1.3649 2.4643 37 1 9.8059 3.5931 1.4319 38 1 12.1768 2.6007 0.0456 39 1 15.3721 3.0761 0.8774 40 1 10.1065 2.0629 -1.1920 41 1 10.0088 3.8323 -1.0280 42 1 7.8009 2.8702 -1.6204 43 1 7.7600 3.6128 -0.0033 44 1 4.1282 -2.0520 -0.0091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026508026.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:25 Heat of formation + Delta-G solvation = -23.688214 kcal Electronic energy + Delta-G solvation = -26179.233677 eV Core-core repulsion = 22325.009026 eV Total energy + Delta-G solvation = -3854.224651 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.28128 -40.07954 -38.25526 -37.85080 -35.73906 -34.93223 -33.02988 -31.52818 -30.70342 -30.39428 -28.88606 -27.35508 -25.19934 -24.79874 -23.47034 -22.36277 -21.41473 -20.66160 -19.65053 -18.99794 -18.23086 -17.58584 -16.99620 -16.95748 -16.24173 -16.16580 -15.24530 -15.08553 -14.95362 -14.53882 -14.04250 -13.91484 -13.79628 -13.68414 -13.57049 -13.34438 -13.31637 -12.97397 -12.55791 -12.03162 -11.80058 -11.46391 -11.11584 -11.01235 -10.93602 -10.81788 -10.77017 -10.74669 -10.66564 -10.18170 -10.10997 -10.05507 -9.74652 -9.58103 -9.10770 -8.97534 -8.83686 -6.91806 -5.73676 -3.02002 -0.18824 1.13020 1.83777 2.43811 2.79900 3.28929 3.38117 3.44956 3.50549 3.52791 3.93160 3.99129 4.37204 4.57223 4.61306 4.68466 4.85333 4.91958 4.99432 5.04846 5.20571 5.28968 5.53691 5.61734 5.65194 5.69727 5.74665 5.84950 5.88856 5.95410 6.03673 6.23994 6.25542 6.31173 6.48373 6.57558 6.64370 6.73950 7.00035 7.02717 7.17324 7.22292 7.41185 7.73542 7.98586 8.45316 9.56252 10.15118 10.49496 11.49157 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035817 B = 0.002073 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.555492 B =13503.697095 C =13589.430753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.525 5.525 3 C 0.375 3.625 4 N -0.525 5.525 5 C 0.130 3.870 6 C 0.566 3.434 7 O -0.520 6.520 8 N -0.700 5.700 9 C 0.142 3.858 10 C -0.124 4.124 11 C -0.132 4.132 12 C 0.177 3.823 13 N -0.726 5.726 14 C -0.235 4.235 15 H 0.070 0.930 16 C -0.016 4.016 17 N -0.933 5.933 18 Si 0.905 3.095 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.211 4.211 25 C 0.517 3.483 26 O -0.525 6.525 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.211 0.789 31 H 0.409 0.591 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.383 0.617 39 H 0.254 0.746 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.031 -0.528 -4.249 31.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.244 5.244 3 C 0.090 3.910 4 N -0.249 5.249 5 C 0.009 3.991 6 C 0.349 3.651 7 O -0.395 6.395 8 N -0.350 5.350 9 C 0.039 3.961 10 C -0.163 4.163 11 C -0.173 4.173 12 C 0.067 3.933 13 N -0.366 5.366 14 C -0.367 4.367 15 H 0.088 0.912 16 C -0.212 4.212 17 N -0.582 5.582 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.159 4.159 23 C -0.157 4.157 24 C -0.238 4.238 25 C 0.315 3.685 26 O -0.402 6.402 27 H 0.101 0.899 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.227 0.773 31 H 0.245 0.755 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.217 0.783 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -30.289 -1.254 -4.083 30.589 hybrid contribution 0.028 -0.092 0.652 0.659 sum -30.261 -1.345 -3.431 30.484 Atomic orbital electron populations 1.22271 0.76103 1.05656 1.04622 1.46700 1.10943 1.08206 1.58503 1.24935 0.89044 0.89969 0.87101 1.68281 1.04171 1.29758 1.22692 1.21507 0.94894 0.89052 0.93619 1.17797 0.85170 0.84453 0.77696 1.90836 1.64440 1.34975 1.49229 1.46018 1.08321 1.07989 1.72648 1.21242 0.77415 0.99398 0.98045 1.21906 0.97771 1.01525 0.95123 1.22228 0.91995 1.00788 1.02294 1.20247 0.85849 0.94363 0.92863 1.42440 0.99550 1.78853 1.15749 1.19289 0.89325 1.35448 0.92589 0.91170 1.24747 0.96431 1.02534 0.97463 1.69675 1.06262 1.54574 1.27671 0.86139 0.79808 0.77963 0.82430 1.20596 1.21940 1.21946 1.21763 0.92738 1.02360 0.99067 1.21754 0.97614 0.95790 1.00493 1.23490 0.92844 1.00731 1.06713 1.17326 0.88714 0.83285 0.79137 1.90968 1.70305 1.28161 1.50791 0.89857 0.88479 0.88795 0.77257 0.75526 0.89188 0.92135 0.92325 0.92425 0.91742 0.93546 0.78302 0.93622 0.91928 0.91282 0.91759 0.91380 0.81168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.11 10.39 59.85 0.62 0.74 16 2 N -0.52 -2.96 2.97 -128.42 -0.38 -3.34 16 3 C 0.37 1.49 11.45 -90.67 -1.04 0.45 16 4 N -0.53 -3.86 9.64 -10.82 -0.10 -3.97 16 5 C 0.13 1.35 6.77 -82.64 -0.56 0.79 16 6 C 0.57 7.22 7.79 -12.01 -0.09 7.13 16 7 O -0.52 -8.47 16.03 5.40 0.09 -8.38 16 8 N -0.70 -7.81 5.07 -54.52 -0.28 -8.08 16 9 C 0.14 1.86 2.45 -67.93 -0.17 1.69 16 10 C -0.12 -1.82 5.49 -26.73 -0.15 -1.97 16 11 C -0.13 -2.38 5.50 -26.73 -0.15 -2.53 16 12 C 0.18 3.41 2.77 -67.93 -0.19 3.22 16 13 N -0.73 -18.04 5.12 -53.43 -0.27 -18.31 16 14 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 17 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 18 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 C -0.12 -1.89 5.39 -26.70 -0.14 -2.03 16 23 C -0.12 -1.42 5.39 -26.70 -0.14 -1.57 16 24 C -0.21 -2.31 9.67 -38.41 -0.37 -2.68 16 25 C 0.52 5.27 7.47 -14.88 -0.11 5.16 16 26 O -0.53 -7.03 16.76 5.00 0.08 -6.95 16 27 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 28 H 0.10 0.36 7.44 -51.93 -0.39 -0.03 16 29 H 0.09 -0.14 8.00 -51.93 -0.42 -0.56 16 30 H 0.21 -0.29 8.01 -52.48 -0.42 -0.71 16 31 H 0.41 3.64 7.97 -40.82 -0.33 3.32 16 32 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 38 H 0.38 10.16 7.80 -40.82 -0.32 9.85 16 39 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.17 2.01 7.68 -52.49 -0.40 1.60 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -36.34 367.48 -8.79 -45.13 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.43 Total: 7.30 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -2.73 Total: 1.18 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: -0.31 Total: -61.29 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.17 Total: -15.33 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.34 -8.79 -45.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026508026.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.444 kcal (2) G-P(sol) polarization free energy of solvation -36.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds