Wall clock time and date at job start Fri Apr 10 2020 18:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 119.89420 * 2 1 4 4 N 1.30438 * 121.82467 * 179.70226 * 3 2 1 5 5 C 1.34322 * 121.47610 * 0.57261 * 4 3 2 6 6 C 1.48554 * 120.20741 * 179.69646 * 5 4 3 7 7 O 1.21466 * 119.99940 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00297 * 0.02562 * 6 5 4 9 9 C 1.46501 * 120.00270 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.47249 * 275.00720 * 9 8 6 11 11 C 1.53002 * 109.46935 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47093 * 59.99982 * 11 10 9 13 13 N 1.46499 * 109.46924 * 180.02562 * 12 11 10 14 14 C 1.36941 * 119.99754 * 274.99410 * 13 12 11 15 15 H 1.07999 * 119.99642 * 0.02562 * 14 13 12 16 16 C 1.38812 * 120.00450 * 179.97438 * 14 13 12 17 17 N 1.31628 * 119.99692 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00532 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46679 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47308 * 120.00056 * 18 16 14 21 21 H 1.48495 * 109.46891 * 240.00187 * 18 16 14 22 22 C 1.53000 * 109.47199 * 299.99507 * 12 11 10 23 23 C 1.52999 * 109.47407 * 155.00547 * 9 8 6 24 24 C 1.37926 * 119.58051 * 359.71873 * 5 4 3 25 25 C 1.34984 * 119.89450 * 180.26672 * 2 1 3 26 26 O 1.21907 * 120.71043 * 0.02613 * 25 2 1 27 27 H 1.09002 * 109.47391 * 269.73051 * 1 2 3 28 28 H 1.09001 * 109.46813 * 149.73108 * 1 2 3 29 29 H 1.09004 * 109.47041 * 29.73235 * 1 2 3 30 30 H 1.08003 * 119.08998 * 359.97385 * 3 2 1 31 31 H 0.96999 * 120.00191 * 0.02562 * 8 6 5 32 32 H 1.09001 * 109.46956 * 35.00161 * 9 8 6 33 33 H 1.09001 * 109.46685 * 299.99606 * 10 9 8 34 34 H 1.08991 * 109.47248 * 59.99830 * 10 9 8 35 35 H 1.08996 * 109.46883 * 299.99717 * 11 10 9 36 36 H 1.08995 * 109.46887 * 179.97438 * 11 10 9 37 37 H 1.08996 * 109.47472 * 60.00096 * 12 11 10 38 38 H 0.96991 * 120.00652 * 94.99866 * 13 12 11 39 39 H 0.96998 * 119.99827 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.47389 * 300.00640 * 22 12 11 41 41 H 1.08991 * 109.47203 * 180.02562 * 22 12 11 42 42 H 1.09008 * 109.47049 * 300.00241 * 23 9 8 43 43 H 1.08996 * 109.47019 * 59.99612 * 23 9 8 44 44 H 1.07995 * 120.83544 * 180.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1367 1.1684 0.0000 4 7 3.4403 1.2124 0.0058 5 6 4.1799 0.0911 0.0005 6 6 5.6631 0.1741 0.0005 7 8 6.3283 -0.8423 -0.0047 8 7 6.2708 1.3770 0.0063 9 6 7.7336 1.4588 0.0057 10 6 8.2508 1.3542 1.4419 11 6 9.7785 1.4390 1.4412 12 6 10.2148 2.7757 0.8380 13 7 11.6775 2.8566 0.8367 14 6 12.3400 3.2937 1.9527 15 1 11.7841 3.5784 2.8338 16 6 13.7260 3.3699 1.9518 17 7 14.4036 3.0225 0.8781 18 14 14.6298 3.9655 3.4743 19 1 13.6460 4.2917 4.5379 20 1 15.5438 2.8989 3.9563 21 1 15.4178 5.1786 3.1392 22 6 9.6976 2.8803 -0.5982 23 6 8.1694 2.7957 -0.5972 24 6 3.5535 -1.1377 -0.0053 25 6 2.1378 -1.1702 -0.0054 26 8 1.5394 -2.2323 -0.0109 27 1 -0.3634 -0.0048 1.0276 28 1 -0.3633 -0.8876 -0.5180 29 1 -0.3633 0.8924 -0.5097 30 1 1.5802 2.0940 -0.0004 31 1 5.7398 2.1887 0.0108 32 1 8.1429 0.6416 -0.5882 33 1 7.8415 2.1714 2.0358 34 1 7.9404 0.4018 1.8714 35 1 10.1874 0.6216 0.8473 36 1 10.1469 1.3649 2.4643 37 1 9.8059 3.5931 1.4319 38 1 12.1768 2.6007 0.0456 39 1 15.3721 3.0761 0.8774 40 1 10.1065 2.0629 -1.1920 41 1 10.0088 3.8323 -1.0280 42 1 7.8009 2.8702 -1.6204 43 1 7.7600 3.6128 -0.0033 44 1 4.1282 -2.0520 -0.0091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026508026.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:25 Heat of formation + Delta-G solvation = -50.106514 kcal Electronic energy + Delta-G solvation = -26180.379260 eV Core-core repulsion = 22325.009026 eV Total energy + Delta-G solvation = -3855.370234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.90731 -41.12759 -39.40432 -38.75248 -36.44542 -36.33215 -34.65718 -32.46944 -32.20820 -31.67297 -29.68307 -28.55524 -26.04030 -25.57411 -25.08305 -23.63121 -22.62089 -21.73177 -20.98462 -19.81628 -19.19302 -18.84385 -18.09024 -17.53585 -17.26102 -17.01953 -16.79353 -16.21058 -15.88955 -15.57407 -15.37878 -15.31510 -15.01931 -14.69801 -14.53383 -14.41246 -13.99682 -13.84113 -13.46188 -13.44288 -13.15907 -13.07023 -12.85349 -12.45215 -12.31364 -12.09308 -12.01779 -11.89984 -11.62882 -11.50279 -11.46185 -11.43427 -11.19262 -11.03471 -10.82628 -10.12464 -9.76547 -8.97328 -7.92008 -5.19790 -0.88215 0.51572 1.36825 1.47562 1.48620 1.55745 1.58267 1.85237 2.54394 2.57769 2.81873 3.28288 3.41016 3.64862 3.76818 3.84055 3.90231 3.94828 4.09628 4.30481 4.36983 4.39273 4.41540 4.48528 4.50741 4.55738 4.61709 4.66955 4.84771 4.87428 5.01636 5.11302 5.15045 5.18721 5.27865 5.29836 5.36989 5.42976 5.53223 5.57692 5.66378 6.30486 6.31224 6.54021 6.62486 7.05670 7.36436 8.14747 8.36566 9.31902 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035817 B = 0.002073 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.555492 B =13503.697095 C =13589.430753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.516 5.516 3 C 0.400 3.600 4 N -0.538 5.538 5 C 0.148 3.852 6 C 0.561 3.439 7 O -0.564 6.564 8 N -0.681 5.681 9 C 0.149 3.851 10 C -0.113 4.113 11 C -0.123 4.123 12 C 0.172 3.828 13 N -0.740 5.740 14 C -0.232 4.232 15 H 0.076 0.924 16 C -0.081 4.081 17 N -0.971 5.971 18 Si 0.970 3.030 19 H -0.265 1.265 20 H -0.298 1.298 21 H -0.293 1.293 22 C -0.113 4.113 23 C -0.104 4.104 24 C -0.246 4.246 25 C 0.514 3.486 26 O -0.571 6.571 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.144 0.856 30 H 0.278 0.722 31 H 0.425 0.575 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.039 0.961 36 H 0.041 0.959 37 H 0.050 0.950 38 H 0.371 0.629 39 H 0.249 0.751 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.478 2.575 -3.961 34.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.231 5.231 3 C 0.117 3.883 4 N -0.262 5.262 5 C 0.025 3.975 6 C 0.346 3.654 7 O -0.442 6.442 8 N -0.332 5.332 9 C 0.044 3.956 10 C -0.152 4.152 11 C -0.164 4.164 12 C 0.063 3.937 13 N -0.379 5.379 14 C -0.364 4.364 15 H 0.094 0.906 16 C -0.273 4.273 17 N -0.623 5.623 18 Si 0.800 3.200 19 H -0.189 1.189 20 H -0.225 1.225 21 H -0.220 1.220 22 C -0.152 4.152 23 C -0.142 4.142 24 C -0.273 4.273 25 C 0.313 3.687 26 O -0.452 6.452 27 H 0.114 0.886 28 H 0.095 0.905 29 H 0.162 0.838 30 H 0.293 0.707 31 H 0.264 0.736 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.203 0.797 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -33.855 1.919 -3.780 34.119 hybrid contribution 0.976 -1.000 0.562 1.506 sum -32.879 0.920 -3.218 33.049 Atomic orbital electron populations 1.22641 0.73365 1.07176 1.05956 1.46789 1.12629 1.07275 1.56431 1.26253 0.88164 0.91020 0.82835 1.68322 1.05737 1.27801 1.24352 1.21137 0.93686 0.89761 0.92917 1.18196 0.86296 0.84102 0.76825 1.90819 1.65752 1.36518 1.51092 1.45775 1.07439 1.08263 1.71719 1.21008 0.78520 0.99554 0.96480 1.21770 0.95002 1.01682 0.96733 1.22032 0.94570 0.99485 1.00303 1.20511 0.82952 0.94631 0.95558 1.42692 1.01888 1.78698 1.14580 1.19669 0.89718 1.33696 0.93356 0.90600 1.25556 0.97481 1.03924 1.00353 1.69831 1.06039 1.56681 1.29731 0.85110 0.78511 0.76942 0.79463 1.18928 1.22533 1.22019 1.21649 0.95435 1.02024 0.96100 1.21654 0.94558 0.95500 1.02489 1.23292 0.93695 1.00354 1.09984 1.17220 0.88423 0.84144 0.78960 1.90933 1.70972 1.30069 1.53204 0.88571 0.90535 0.83762 0.70661 0.73629 0.91319 0.90255 0.93424 0.94239 0.94027 0.93174 0.79729 0.94205 0.92884 0.91216 0.89144 0.89049 0.83683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.02 10.39 127.77 1.33 1.35 16 2 N -0.52 -4.25 2.97 -678.23 -2.01 -6.26 16 3 C 0.40 1.17 11.45 180.37 2.07 3.24 16 4 N -0.54 -5.98 9.64 -188.16 -1.81 -7.79 16 5 C 0.15 2.92 6.77 41.44 0.28 3.20 16 6 C 0.56 14.09 7.79 87.00 0.68 14.77 16 7 O -0.56 -19.15 16.03 -3.61 -0.06 -19.21 16 8 N -0.68 -13.73 5.07 -444.73 -2.25 -15.99 16 9 C 0.15 3.66 2.45 44.99 0.11 3.77 16 10 C -0.11 -3.21 5.49 30.60 0.17 -3.04 16 11 C -0.12 -4.50 5.50 30.60 0.17 -4.33 16 12 C 0.17 6.54 2.77 44.99 0.12 6.66 16 13 N -0.74 -37.31 5.12 -322.94 -1.65 -38.96 16 14 C -0.23 -12.93 9.93 84.03 0.83 -12.09 16 15 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 16 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 17 N -0.97 -60.32 13.06 21.65 0.28 -60.03 16 18 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 19 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 21 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 22 C -0.11 -3.41 5.39 30.61 0.17 -3.24 16 23 C -0.10 -2.18 5.39 30.61 0.17 -2.02 16 24 C -0.25 -5.62 9.67 23.03 0.22 -5.40 16 25 C 0.51 10.45 7.47 85.04 0.63 11.08 16 26 O -0.57 -16.02 16.76 -5.01 -0.08 -16.11 16 27 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.08 0.44 7.44 -2.39 -0.02 0.42 16 29 H 0.14 -1.36 8.00 -2.38 -0.02 -1.38 16 30 H 0.28 -3.02 8.01 -2.91 -0.02 -3.04 16 31 H 0.42 5.95 7.97 -92.71 -0.74 5.21 16 32 H 0.07 2.05 7.58 -2.39 -0.02 2.03 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 34 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 38 H 0.37 20.26 7.80 -92.72 -0.72 19.54 16 39 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 41 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.15 3.92 7.68 -2.91 -0.02 3.90 16 Total: -1.00 -85.51 367.48 1.42 -84.09 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -0.43 Total: 21.86 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 7.41 Total: 9.69 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -7.45 Total: -129.04 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.14 Total: -35.32 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -85.51 1.42 -84.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026508026.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.987 kcal (2) G-P(sol) polarization free energy of solvation -85.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds