Wall clock time and date at job start Fri Apr 10 2020 18:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36936 * 119.99848 * 2 1 4 4 H 1.08003 * 119.99828 * 201.22664 * 3 2 1 5 5 C 1.38806 * 120.00160 * 21.23153 * 3 2 1 6 6 N 1.31619 * 120.00286 * 20.75346 * 5 3 2 7 7 Si 1.86802 * 120.00117 * 200.75380 * 5 3 2 8 8 H 1.48496 * 109.47063 * 59.99896 * 7 5 3 9 9 H 1.48499 * 109.47112 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47088 * 299.99893 * 7 5 3 11 11 C 1.46502 * 119.99735 * 180.02562 * 2 1 3 12 12 H 1.09001 * 109.49251 * 180.02562 * 11 2 1 13 13 C 1.53039 * 109.49777 * 59.99836 * 11 2 1 14 14 C 1.53046 * 109.53552 * 178.68355 * 13 11 2 15 15 C 1.53190 * 109.33844 * 61.34968 * 14 13 11 16 16 N 1.46935 * 108.77018 * 305.40907 * 15 14 13 17 17 C 1.34776 * 120.60625 * 233.57788 * 16 15 14 18 18 O 1.21594 * 119.99785 * 169.39641 * 17 16 15 19 19 C 1.47568 * 119.99976 * 349.39437 * 17 16 15 20 20 C 1.38058 * 119.72849 * 171.74919 * 19 17 16 21 21 N 1.34870 * 119.95110 * 179.97438 * 20 19 17 22 22 C 1.46502 * 120.30914 * 180.02562 * 21 20 19 23 23 C 1.34960 * 119.38392 * 359.97438 * 21 20 19 24 24 O 1.21860 * 120.26983 * 180.02562 * 23 21 20 25 25 C 1.41790 * 119.45608 * 0.02562 * 23 21 20 26 26 N 1.30603 * 120.03514 * 359.73050 * 25 23 21 27 27 C 1.46927 * 118.76370 * 53.56092 * 16 15 14 28 28 H 1.09000 * 109.46910 * 275.49621 * 1 2 3 29 29 H 1.09006 * 109.46866 * 35.49109 * 1 2 3 30 30 H 1.08997 * 109.47322 * 155.49387 * 1 2 3 31 31 H 0.96999 * 120.00497 * 179.97438 * 6 5 3 32 32 H 1.08996 * 109.45935 * 58.66551 * 13 11 2 33 33 H 1.09002 * 109.45976 * 298.69924 * 13 11 2 34 34 H 1.08998 * 109.49533 * 181.31747 * 14 13 11 35 35 H 1.09002 * 109.49799 * 301.37809 * 14 13 11 36 36 H 1.08994 * 109.58858 * 65.16956 * 15 14 13 37 37 H 1.09003 * 109.58466 * 185.59610 * 15 14 13 38 38 H 1.07999 * 120.02195 * 359.95746 * 20 19 17 39 39 H 1.08993 * 109.47846 * 89.99502 * 22 21 20 40 40 H 1.08998 * 109.46562 * 209.99913 * 22 21 20 41 41 H 1.09000 * 109.46870 * 329.99325 * 22 21 20 42 42 H 1.07998 * 119.97767 * 180.02562 * 25 23 21 43 43 H 1.09000 * 109.58758 * 186.62196 * 27 16 15 44 44 H 1.09006 * 109.58502 * 66.19786 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1748 1.2176 -0.3387 5 6 1.5263 2.3472 0.4353 6 7 0.4657 2.2737 1.2112 7 14 2.1927 4.0145 -0.0800 8 1 2.1615 4.1239 -1.5606 9 1 1.3553 5.0874 0.5140 10 1 3.5916 4.1576 0.3975 11 6 2.1975 -1.2688 -0.0006 12 1 3.2693 -1.0701 0.0000 13 6 1.8282 -2.0712 -1.2503 14 6 2.6175 -3.3823 -1.2684 15 6 2.2503 -4.2127 -0.0345 16 7 2.4654 -3.3947 1.1670 17 6 3.2362 -3.8467 2.1759 18 8 3.5653 -3.0952 3.0733 19 6 3.6806 -5.2538 2.1915 20 6 4.6051 -5.6694 3.1288 21 7 5.0141 -6.9545 3.1475 22 6 5.9944 -7.4040 4.1391 23 6 4.5111 -7.8226 2.2449 24 8 4.8689 -8.9875 2.2474 25 6 3.5629 -7.3682 1.2937 26 7 3.1787 -6.1200 1.2985 27 6 1.8249 -2.0748 1.2477 28 1 -0.3633 0.0984 1.0229 29 1 -0.3633 0.8368 -0.5967 30 1 -0.3634 -0.9351 -0.4262 31 1 0.0303 3.0852 1.5157 32 1 2.0698 -1.4896 -2.1398 33 1 0.7605 -2.2904 -1.2387 34 1 2.3715 -3.9426 -2.1704 35 1 3.6854 -3.1642 -1.2556 36 1 1.2029 -4.5087 -0.0919 37 1 2.8813 -5.1004 0.0095 38 1 5.0008 -4.9659 3.8464 39 1 5.4751 -7.7487 5.0332 40 1 6.5832 -8.2215 3.7230 41 1 6.6544 -6.5763 4.3986 42 1 3.1546 -8.0558 0.5678 43 1 2.1751 -1.5525 2.1380 44 1 0.7426 -2.1961 1.2947 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027499580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:46 Heat of formation + Delta-G solvation = 5.119159 kcal Electronic energy + Delta-G solvation = -27467.916013 eV Core-core repulsion = 23614.940543 eV Total energy + Delta-G solvation = -3852.975470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.05239 -41.12221 -39.08422 -38.46638 -37.25417 -36.57171 -33.91504 -32.79924 -31.79994 -30.49086 -29.34503 -28.02140 -26.86184 -25.81167 -25.21113 -24.67996 -22.98269 -21.76295 -20.31798 -19.78658 -18.86862 -18.48768 -18.13454 -17.61898 -17.22492 -16.86734 -16.52984 -16.20560 -15.91900 -15.59618 -15.30123 -15.19506 -15.02251 -14.56186 -14.51662 -14.34720 -14.07541 -13.88721 -13.55829 -13.53255 -13.39898 -13.00067 -12.87140 -12.64561 -12.44117 -12.19792 -12.15946 -12.07980 -11.94591 -11.69016 -11.52800 -11.37574 -11.28396 -10.59889 -10.06697 -9.72466 -9.31792 -8.76386 -7.83969 -5.28565 -0.59984 0.02726 1.14638 1.46223 1.48470 1.55543 1.69605 1.99480 2.51951 2.53516 2.93243 3.04456 3.27338 3.47547 3.65958 3.74374 4.01007 4.06479 4.11236 4.20519 4.31030 4.32080 4.39391 4.42428 4.63981 4.68266 4.71984 4.79165 4.84965 4.87860 4.98025 5.10830 5.18528 5.24208 5.27190 5.36344 5.47169 5.57142 5.61250 5.68558 5.69894 6.26677 6.32207 6.46183 6.55571 7.08914 7.14350 7.87077 8.30280 9.18651 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025275 B = 0.002953 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.534635 B = 9479.655971 C =10066.484576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.606 5.606 3 C -0.270 4.270 4 H 0.066 0.934 5 C -0.049 4.049 6 N -0.931 5.931 7 Si 0.965 3.035 8 H -0.278 1.278 9 H -0.293 1.293 10 H -0.278 1.278 11 C 0.168 3.832 12 H 0.044 0.956 13 C -0.123 4.123 14 C -0.124 4.124 15 C 0.086 3.914 16 N -0.590 5.590 17 C 0.578 3.422 18 O -0.585 6.585 19 C -0.091 4.091 20 C 0.197 3.803 21 N -0.475 5.475 22 C 0.045 3.955 23 C 0.471 3.529 24 O -0.549 6.549 25 C 0.043 3.957 26 N -0.370 5.370 27 C 0.114 3.886 28 H 0.002 0.998 29 H 0.013 0.987 30 H 0.040 0.960 31 H 0.249 0.751 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.150 0.850 38 H 0.206 0.794 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.123 0.877 42 H 0.222 0.778 43 H 0.050 0.950 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.525 -22.927 0.751 24.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.328 5.328 3 C -0.400 4.400 4 H 0.083 0.917 5 C -0.245 4.245 6 N -0.577 5.577 7 Si 0.793 3.207 8 H -0.204 1.204 9 H -0.220 1.220 10 H -0.204 1.204 11 C 0.060 3.940 12 H 0.062 0.938 13 C -0.162 4.162 14 C -0.163 4.163 15 C -0.035 4.035 16 N -0.320 5.320 17 C 0.367 3.633 18 O -0.466 6.466 19 C -0.213 4.213 20 C 0.060 3.940 21 N -0.184 5.184 22 C -0.094 4.094 23 C 0.269 3.731 24 O -0.427 6.427 25 C -0.146 4.146 26 N -0.086 5.086 27 C -0.010 4.010 28 H 0.020 0.980 29 H 0.032 0.968 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.166 0.834 38 H 0.223 0.777 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.142 0.858 42 H 0.238 0.762 43 H 0.069 0.931 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.318 -22.737 0.858 24.226 hybrid contribution 0.470 1.339 0.710 1.587 sum 8.789 -21.398 1.569 23.186 Atomic orbital electron populations 1.20521 0.82665 0.96383 0.97558 1.44181 1.02092 1.01002 1.85542 1.19457 0.97826 0.86294 1.36392 0.91651 1.25688 0.99231 1.01550 0.98037 1.70258 1.24622 1.27633 1.35218 0.85376 0.77558 0.79629 0.78122 1.20370 1.21954 1.20354 1.20764 0.94854 0.85202 0.93186 0.93776 1.21941 1.00507 0.96325 0.97425 1.21942 0.99720 0.95425 0.99165 1.22962 1.04010 0.95095 0.81416 1.48049 1.47504 1.17783 1.18680 1.17746 0.78015 0.85900 0.81659 1.90792 1.58467 1.57956 1.39400 1.19999 1.05967 0.94381 1.01003 1.23335 0.89784 0.85612 0.95257 1.45737 1.35485 1.08365 1.28823 1.22719 0.91660 1.04288 0.90765 1.19032 0.84551 0.86319 0.83207 1.90949 1.61768 1.16960 1.73026 1.25313 0.96608 0.92791 0.99865 1.67728 1.20355 1.02854 1.17624 1.22051 0.96395 0.82535 1.00064 0.97956 0.96803 0.94142 0.94193 0.92658 0.91864 0.87846 0.92563 0.90908 0.83395 0.77706 0.88252 0.88453 0.85834 0.76179 0.93091 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.60 7.96 127.77 1.02 9.62 16 2 N -0.61 -30.95 2.81 -702.33 -1.98 -32.93 16 3 C -0.27 -15.31 9.56 84.03 0.80 -14.50 16 4 H 0.07 3.65 7.86 -2.91 -0.02 3.63 16 5 C -0.05 -2.83 4.93 84.86 0.42 -2.41 16 6 N -0.93 -56.42 11.08 21.65 0.24 -56.18 16 7 Si 0.97 46.11 29.60 68.60 2.03 48.14 16 8 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 9 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 11 C 0.17 7.02 2.74 45.07 0.12 7.14 16 12 H 0.04 2.00 7.85 -2.39 -0.02 1.98 16 13 C -0.12 -3.98 5.13 30.62 0.16 -3.82 16 14 C -0.12 -2.98 6.08 30.67 0.19 -2.79 16 15 C 0.09 2.06 5.79 86.36 0.50 2.56 16 16 N -0.59 -18.81 2.97 -822.59 -2.45 -21.25 16 17 C 0.58 18.15 7.61 86.71 0.66 18.81 16 18 O -0.58 -22.52 15.76 -4.01 -0.06 -22.58 16 19 C -0.09 -1.99 6.52 41.21 0.27 -1.73 16 20 C 0.20 3.09 9.90 84.18 0.83 3.93 16 21 N -0.48 -6.42 2.97 -671.21 -2.00 -8.41 16 22 C 0.04 0.29 10.42 127.77 1.33 1.63 16 23 C 0.47 8.18 7.45 85.09 0.63 8.81 16 24 O -0.55 -12.44 16.75 -4.86 -0.08 -12.53 16 25 C 0.04 0.64 11.23 85.75 0.96 1.60 16 26 N -0.37 -6.91 6.26 -183.47 -1.15 -8.06 16 27 C 0.11 4.59 5.80 86.36 0.50 5.09 16 28 H 0.00 0.12 7.36 -2.39 -0.02 0.10 16 29 H 0.01 0.71 7.45 -2.38 -0.02 0.70 16 30 H 0.04 1.67 6.47 -2.39 -0.02 1.66 16 31 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.06 1.99 6.72 -2.39 -0.02 1.98 16 34 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.15 3.03 4.18 -53.33 -0.22 2.80 16 38 H 0.21 2.52 7.60 -2.91 -0.02 2.50 16 39 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.10 0.78 7.46 -2.39 -0.02 0.77 16 41 H 0.12 0.14 8.04 -2.39 -0.02 0.13 16 42 H 0.22 1.92 8.06 -2.91 -0.02 1.90 16 43 H 0.05 2.44 7.01 -2.39 -0.02 2.43 16 44 H 0.06 2.42 7.51 -2.38 -0.02 2.40 16 Total: -1.00 -77.31 353.24 3.76 -73.54 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 0.80 Total: 6.32 kcal Atomic # 6 Polarization: 25.54 SS G_CDS: 8.40 Total: 33.94 kcal Atomic # 7 Polarization: -119.51 SS G_CDS: -7.33 Total: -126.84 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.14 Total: -35.11 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -77.31 3.76 -73.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027499580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.663 kcal (2) G-P(sol) polarization free energy of solvation -77.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds