Wall clock time and date at job start Fri Apr 10 2020 18:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00385 * 2 1 4 4 H 1.48497 * 109.47547 * 274.99698 * 3 2 1 5 5 H 1.48510 * 109.46969 * 34.99279 * 3 2 1 6 6 H 1.48503 * 109.47392 * 154.98831 * 3 2 1 7 7 C 1.37885 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00288 * 173.96608 * 7 2 1 9 9 C 1.50704 * 119.99820 * 354.23855 * 7 2 1 10 10 O 1.42901 * 110.88626 * 299.58577 * 9 7 2 11 11 C 1.55154 * 111.00554 * 63.46416 * 9 7 2 12 12 C 1.54320 * 102.94026 * 153.57446 * 11 9 7 13 13 N 1.47018 * 107.27589 * 337.81089 * 12 11 9 14 14 C 1.34774 * 125.65075 * 178.97256 * 13 12 11 15 15 O 1.21603 * 119.99716 * 179.97438 * 14 13 12 16 16 C 1.47437 * 119.99996 * 359.97438 * 14 13 12 17 17 C 1.40379 * 120.20539 * 89.71939 * 16 14 13 18 18 N 1.38883 * 120.17824 * 0.02562 * 17 16 14 19 19 C 1.38915 * 119.64636 * 179.74541 * 17 16 14 20 20 C 1.38002 * 120.06467 * 0.53345 * 19 17 16 21 21 C 1.38572 * 120.42113 * 359.74013 * 20 19 17 22 22 C 1.37793 * 120.35130 * 359.97438 * 21 20 19 23 23 N 1.48014 * 120.03647 * 180.02562 * 22 21 20 24 24 O 1.21799 * 120.00210 * 0.02562 * 23 22 21 25 25 O 1.21803 * 119.99725 * 180.02562 * 23 22 21 26 26 C 1.47473 * 108.72030 * 358.97346 * 13 12 11 27 27 H 0.96998 * 119.99771 * 359.97438 * 1 2 3 28 28 H 0.96701 * 113.99730 * 59.29621 * 10 9 7 29 29 H 1.08998 * 110.72154 * 271.94289 * 11 9 7 30 30 H 1.09008 * 110.71686 * 35.03794 * 11 9 7 31 31 H 1.09003 * 109.88044 * 97.23222 * 12 11 9 32 32 H 1.09005 * 109.88433 * 218.38875 * 12 11 9 33 33 H 0.96995 * 119.99454 * 359.97438 * 18 17 16 34 34 H 0.96995 * 119.99879 * 179.97438 * 18 17 16 35 35 H 1.07994 * 119.97059 * 180.29791 * 19 17 16 36 36 H 1.08003 * 119.79158 * 179.76124 * 20 19 17 37 37 H 1.08000 * 119.82528 * 179.97438 * 21 20 19 38 38 H 1.08997 * 110.34660 * 265.25507 * 26 13 12 39 39 H 1.08997 * 110.40508 * 142.91363 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3912 2.1073 -1.3947 5 1 1.5034 2.6199 0.8030 6 1 3.5955 1.4119 0.5920 7 6 2.0046 -1.1941 -0.0005 8 1 3.0800 -1.1967 -0.0988 9 6 1.2567 -2.4960 0.1299 10 8 0.5354 -2.5479 1.3624 11 6 0.3091 -2.7165 -1.0787 12 6 0.1892 -4.2535 -1.1479 13 7 1.3653 -4.8143 -0.4668 14 6 1.6223 -6.1261 -0.2951 15 8 2.6312 -6.4769 0.2861 16 6 0.6803 -7.1357 -0.8119 17 6 0.8257 -7.6354 -2.1156 18 7 1.8584 -7.1817 -2.9260 19 6 -0.0653 -8.5903 -2.5889 20 6 -1.0936 -9.0356 -1.7836 21 6 -1.2432 -8.5400 -0.4982 22 6 -0.3658 -7.5968 -0.0091 23 7 -0.5318 -7.0726 1.3651 24 8 -1.4439 -7.4754 2.0645 25 8 0.2439 -6.2385 1.7965 26 6 2.2175 -3.7039 -0.0024 27 1 -0.4850 0.8400 0.0004 28 1 -0.1136 -1.8389 1.4685 29 1 -0.6640 -2.2617 -0.8938 30 1 0.7512 -2.3199 -1.9927 31 1 -0.7210 -4.5774 -0.6431 32 1 0.1738 -4.5777 -2.1885 33 1 2.4812 -6.5176 -2.5916 34 1 1.9567 -7.5290 -3.8263 35 1 0.0446 -8.9818 -3.5894 36 1 -1.7861 -9.7753 -2.1574 37 1 -2.0517 -8.8950 0.1237 38 1 2.9956 -3.4911 -0.7355 39 1 2.6608 -3.9436 0.9640 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846998.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:17 Heat of formation + Delta-G solvation = -48.489109 kcal Electronic energy + Delta-G solvation = -28306.806274 eV Core-core repulsion = 24217.954419 eV Total energy + Delta-G solvation = -4088.851855 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.120 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.01193 -40.27218 -38.81011 -37.16677 -36.22264 -35.17672 -34.29213 -32.20096 -32.11744 -29.98561 -29.28852 -28.29655 -26.64340 -25.31605 -23.70452 -22.35617 -22.12794 -20.01402 -19.52261 -18.90998 -18.45807 -17.55813 -17.26422 -17.10013 -16.98462 -16.25997 -15.74666 -15.13604 -14.95781 -14.92896 -14.47736 -14.20112 -13.72937 -13.46808 -13.07031 -12.77016 -12.48067 -12.17895 -12.01561 -11.75848 -11.40990 -11.37099 -11.30049 -11.25925 -10.90047 -10.86768 -10.78639 -10.62803 -10.48002 -10.04161 -9.82683 -9.56236 -9.34316 -8.71802 -8.19037 -8.12629 -8.06650 -6.28352 -4.36617 -0.15487 0.82606 1.48076 1.52395 2.75605 3.08117 3.18926 3.27971 3.32074 3.33750 3.42096 4.25486 4.27104 4.46056 4.61072 4.73494 4.86217 4.96995 5.04210 5.46054 5.50529 5.54603 5.68419 5.78746 5.79887 5.96351 5.97763 6.23152 6.44234 6.56179 6.63203 6.84494 6.87254 6.93259 7.23923 7.28763 7.34874 7.73097 7.87353 7.97257 8.02786 8.44220 8.65799 9.32561 9.42032 10.78299 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.019449 B = 0.004206 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.339439 B = 6655.816002 C = 7188.116161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.074 3.926 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.250 3.750 10 O -0.574 6.574 11 C -0.133 4.133 12 C 0.101 3.899 13 N -0.587 5.587 14 C 0.575 3.425 15 O -0.533 6.533 16 C -0.138 4.138 17 C 0.253 3.747 18 N -0.855 5.855 19 C -0.156 4.156 20 C -0.059 4.059 21 C -0.120 4.120 22 C 0.034 3.966 23 N 0.017 4.983 24 O -0.167 6.167 25 O -0.114 6.114 26 C 0.122 3.878 27 H 0.268 0.732 28 H 0.378 0.622 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.408 0.592 34 H 0.407 0.593 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.072 0.928 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.362 -15.376 -10.121 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.729 3.271 4 H -0.207 1.207 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.210 3.790 10 O -0.382 6.382 11 C -0.172 4.172 12 C -0.022 4.022 13 N -0.318 5.318 14 C 0.361 3.639 15 O -0.412 6.412 16 C -0.148 4.148 17 C 0.143 3.857 18 N -0.392 5.392 19 C -0.179 4.179 20 C -0.078 4.078 21 C -0.141 4.141 22 C -0.050 4.050 23 N 0.539 4.461 24 O -0.378 6.378 25 O -0.337 6.337 26 C 0.001 3.999 27 H 0.077 0.923 28 H 0.228 0.772 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.238 0.762 34 H 0.237 0.763 35 H 0.161 0.839 36 H 0.166 0.834 37 H 0.171 0.829 38 H 0.090 0.910 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.541 -16.309 -10.369 19.492 hybrid contribution 0.087 1.658 -0.092 1.663 sum -2.454 -14.651 -10.461 18.169 Atomic orbital electron populations 1.69768 1.05962 1.27595 1.49880 1.24983 0.94979 0.99501 0.93462 0.86429 0.80120 0.82600 0.77975 1.20682 1.20936 1.19587 1.21443 0.94179 0.90313 1.51552 0.91672 1.19557 0.87371 0.90672 0.81448 1.86222 1.57128 1.55113 1.39724 1.23187 1.03398 0.89009 1.01603 1.22167 0.87590 0.97842 0.94580 1.48472 1.24159 1.04282 1.54899 1.17138 0.85289 0.81354 0.80114 1.90805 1.27873 1.80093 1.42395 1.19222 0.98434 1.03108 0.94021 1.17350 0.88814 0.91762 0.87737 1.42367 1.31401 1.48514 1.16953 1.20949 0.96348 0.98943 1.01685 1.20959 0.96858 0.98223 0.91797 1.20750 0.99571 0.96586 0.97222 1.20842 0.99280 1.01294 0.83556 1.43596 1.00019 0.99890 1.02591 1.94483 1.25165 1.62232 1.55954 1.94740 1.39034 1.24254 1.75650 1.22440 0.93226 0.84719 0.99534 0.92253 0.77247 0.89450 0.91327 0.93284 0.93188 0.76176 0.76269 0.83887 0.83415 0.82907 0.90963 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.86 10.77 55.43 0.60 -22.26 16 2 C 0.07 1.87 5.27 -17.82 -0.09 1.78 16 3 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -13.79 8.25 -34.44 -0.28 -14.07 16 8 H 0.07 1.66 7.79 -52.49 -0.41 1.25 16 9 C 0.25 6.03 0.88 -89.62 -0.08 5.95 16 10 O -0.57 -14.99 13.17 -35.23 -0.46 -15.45 16 11 C -0.13 -2.87 5.38 -24.90 -0.13 -3.00 16 12 C 0.10 1.90 6.47 -3.07 -0.02 1.88 16 13 N -0.59 -11.73 3.21 -171.75 -0.55 -12.28 16 14 C 0.58 11.26 3.43 -12.52 -0.04 11.21 16 15 O -0.53 -12.10 17.24 -3.43 -0.06 -12.16 16 16 C -0.14 -2.19 4.82 -104.80 -0.51 -2.70 16 17 C 0.25 2.92 6.76 -83.61 -0.57 2.35 16 18 N -0.86 -8.03 8.99 32.55 0.29 -7.74 16 19 C -0.16 -1.26 9.88 -39.42 -0.39 -1.65 16 20 C -0.06 -0.46 10.03 -39.54 -0.40 -0.86 16 21 C -0.12 -1.35 9.54 -39.62 -0.38 -1.73 16 22 C 0.03 0.54 6.88 -79.57 -0.55 -0.01 16 23 N 0.02 0.33 4.45 34.15 0.15 0.48 16 24 O -0.17 -3.06 18.44 -29.46 -0.54 -3.60 16 25 O -0.11 -2.58 16.27 -33.25 -0.54 -3.12 16 26 C 0.12 2.71 6.08 -2.50 -0.02 2.70 16 27 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 28 H 0.38 9.84 7.56 45.56 0.34 10.18 16 29 H 0.09 2.00 7.52 -51.93 -0.39 1.61 16 30 H 0.07 1.46 8.03 -51.92 -0.42 1.04 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.41 4.57 7.68 -40.82 -0.31 4.25 16 34 H 0.41 2.29 8.83 -40.82 -0.36 1.93 16 35 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 36 H 0.15 0.60 8.06 -52.48 -0.42 0.18 16 37 H 0.15 1.47 7.59 -52.49 -0.40 1.07 16 38 H 0.07 1.49 8.03 -51.93 -0.42 1.08 16 39 H 0.08 1.87 8.04 -51.93 -0.42 1.45 16 LS Contribution 338.86 15.07 5.11 5.11 Total: -1.00 -32.01 338.86 -8.09 -40.10 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -3.61 Total: 14.09 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -3.45 Total: 1.84 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.49 Total: -41.80 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -1.61 Total: -34.33 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.01 -8.09 -40.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846998.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.389 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds