Wall clock time and date at job start Fri Apr 10 2020 18:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47078 * 2 1 4 4 C 1.50695 * 109.47306 * 239.99929 * 2 1 3 5 5 H 1.08002 * 120.00191 * 239.99650 * 4 2 1 6 6 C 1.37878 * 119.99959 * 60.00215 * 4 2 1 7 7 N 1.31513 * 120.00339 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99835 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47262 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47247 * 119.99696 * 8 6 4 11 11 H 1.48502 * 109.47149 * 239.99423 * 8 6 4 12 12 C 1.52998 * 109.47162 * 119.99548 * 2 1 3 13 13 S 1.81396 * 109.47108 * 300.00457 * 12 2 1 14 14 O 1.42097 * 110.54484 * 68.37499 * 13 12 2 15 15 O 1.42099 * 110.54537 * 291.62188 * 13 12 2 16 16 N 1.65607 * 104.44929 * 179.97438 * 13 12 2 17 17 C 1.47156 * 120.97848 * 90.94513 * 16 13 12 18 18 C 1.53301 * 108.38312 * 230.55805 * 17 16 13 19 19 O 1.42967 * 109.22147 * 307.70103 * 18 17 16 20 20 C 1.42963 * 114.16688 * 62.58122 * 19 18 17 21 21 C 1.47145 * 120.98323 * 270.97132 * 16 13 12 22 22 H 1.08999 * 109.68353 * 249.16286 * 21 16 13 23 23 C 1.50706 * 109.68438 * 9.68114 * 21 16 13 24 24 O 1.20827 * 119.99765 * 50.51565 * 23 21 16 25 25 O 1.34228 * 119.99750 * 230.52175 * 23 21 16 26 26 H 1.09000 * 109.47245 * 299.99990 * 1 2 3 27 27 H 1.09000 * 109.46913 * 60.00215 * 1 2 3 28 28 H 1.09000 * 109.46992 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47317 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.47034 * 300.00371 * 3 2 1 31 31 H 1.08997 * 109.47521 * 59.99301 * 3 2 1 32 32 H 0.96991 * 120.00204 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47248 * 180.02562 * 12 2 1 34 34 H 1.09000 * 109.46728 * 60.00376 * 12 2 1 35 35 H 1.09001 * 109.67829 * 110.83541 * 17 16 13 36 36 H 1.09000 * 109.68433 * 350.28051 * 17 16 13 37 37 H 1.09000 * 109.51161 * 187.77554 * 18 17 16 38 38 H 1.08992 * 109.51077 * 67.62358 * 18 17 16 39 39 H 1.09002 * 109.50981 * 57.34214 * 20 19 18 40 40 H 1.09001 * 109.50688 * 177.49483 * 20 19 18 41 41 H 0.96698 * 116.99511 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6035 8 14 2.3215 -1.1204 -4.0078 9 1 3.1465 -2.2870 -3.6037 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1874 -4.8165 12 6 2.0400 -0.7211 1.2493 13 16 1.4353 0.1340 2.7303 14 8 0.0279 -0.0182 2.8543 15 8 2.0478 1.4102 2.8544 16 7 2.0529 -0.7406 3.9937 17 6 3.3565 -0.3997 4.5853 18 6 4.2051 -1.6746 4.6526 19 8 3.4592 -2.7024 5.3092 20 6 2.2629 -3.0846 4.6261 21 6 1.3148 -1.8819 4.5574 22 1 0.9638 -1.6335 5.5590 23 6 0.1386 -2.2117 3.6747 24 8 0.2975 -2.3563 2.4857 25 8 -1.0853 -2.3446 4.2094 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 0.7083 1.1608 -3.4844 33 1 3.1300 -0.7208 1.2495 34 1 1.6767 -1.7488 1.2493 35 1 3.2110 -0.0020 5.5896 36 1 3.8582 0.3430 3.9649 37 1 5.1192 -1.4744 5.2117 38 1 4.4584 -1.9970 3.6428 39 1 2.5092 -3.4122 3.6161 40 1 1.7796 -3.8988 5.1662 41 1 -1.8085 -2.5562 3.6034 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594682725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:32 Heat of formation + Delta-G solvation = -183.523672 kcal Electronic energy + Delta-G solvation = -28193.672811 eV Core-core repulsion = 24202.116618 eV Total energy + Delta-G solvation = -3991.556193 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -40.73505 -39.05725 -36.78015 -36.27733 -35.98123 -35.47835 -34.85429 -32.01932 -31.62007 -27.63777 -26.52767 -25.67958 -25.48432 -25.19369 -22.54570 -21.36250 -19.39393 -18.75194 -18.27732 -17.73676 -17.07714 -16.40724 -16.01608 -15.94068 -15.60185 -15.36630 -15.20531 -14.71498 -14.66308 -14.47609 -13.76042 -13.23162 -13.14641 -12.84935 -12.48112 -12.41308 -12.12784 -12.09881 -11.72889 -11.65632 -11.34507 -11.13906 -11.06854 -10.94354 -10.90106 -10.72932 -10.65690 -10.38354 -10.29651 -10.18286 -10.03458 -9.58335 -9.48277 -9.01980 -8.62289 -8.37615 -6.00562 -4.11663 0.70411 2.04297 2.62783 2.99961 3.26214 3.34355 3.37567 3.59564 4.22960 4.30192 4.38887 4.48096 4.64195 4.77399 4.90227 5.02315 5.10645 5.24057 5.25083 5.25783 5.37166 5.63555 5.68323 5.77461 5.91488 6.27484 6.37641 6.66382 6.73626 6.80719 6.87669 6.96456 7.08109 7.37290 7.56095 7.70968 7.89074 8.02493 8.13383 8.37011 8.86827 9.53030 11.00958 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.017529 B = 0.005122 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.938517 B = 5465.540532 C = 5587.735921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.085 3.915 3 C -0.165 4.165 4 C -0.496 4.496 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.885 5.885 8 Si 0.895 3.105 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.571 4.571 13 S 2.585 3.415 14 O -0.959 6.959 15 O -0.960 6.960 16 N -1.004 6.004 17 C 0.090 3.910 18 C 0.041 3.959 19 O -0.368 6.368 20 C 0.060 3.940 21 C 0.132 3.868 22 H 0.114 0.886 23 C 0.486 3.514 24 O -0.496 6.496 25 O -0.501 6.501 26 H 0.022 0.978 27 H 0.091 0.909 28 H 0.040 0.960 29 H 0.035 0.965 30 H 0.095 0.905 31 H 0.024 0.976 32 H 0.261 0.739 33 H 0.109 0.891 34 H 0.146 0.854 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.790 -6.863 15.769 17.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.082 3.918 3 C -0.222 4.222 4 C -0.535 4.535 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.706 4.706 13 S 2.687 3.313 14 O -0.949 6.949 15 O -0.951 6.951 16 N -0.842 5.842 17 C -0.035 4.035 18 C -0.037 4.037 19 O -0.286 6.286 20 C -0.019 4.019 21 C 0.023 3.977 22 H 0.131 0.869 23 C 0.327 3.673 24 O -0.385 6.385 25 O -0.313 6.313 26 H 0.041 0.959 27 H 0.110 0.890 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.127 0.873 34 H 0.163 0.837 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.132 0.868 41 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 2.570 -5.975 15.911 17.189 hybrid contribution 0.072 -0.837 -1.764 1.954 sum 2.641 -6.812 14.147 15.923 Atomic orbital electron populations 1.22193 0.96791 1.00807 1.01624 1.17905 0.92979 0.91791 0.89080 1.22303 0.99626 0.98146 1.02154 1.20971 1.31381 1.11893 0.89294 0.92281 1.24939 0.94975 0.95017 0.98895 1.69814 1.36532 1.22755 1.23271 0.86486 0.78631 0.79628 0.82934 1.19834 1.20960 1.20980 1.30678 1.10152 1.14719 1.15039 1.06112 0.74806 0.74724 0.75652 1.93474 1.30018 1.86045 1.85363 1.93529 1.78062 1.37735 1.85754 1.58292 1.30348 1.44125 1.51457 1.22146 0.82483 0.98015 1.00887 1.23126 0.94415 0.87193 0.98996 1.87981 1.35154 1.55857 1.49575 1.22875 0.85432 0.93942 0.99605 1.20971 0.88971 0.89751 0.97976 0.86869 1.22604 0.84306 0.73103 0.87276 1.90778 1.84971 1.46451 1.16264 1.84338 1.18108 1.82456 1.46350 0.95902 0.89048 0.94077 0.94548 0.88613 0.95721 0.92869 0.87251 0.83657 0.89975 0.87475 0.87055 0.91748 0.90871 0.86836 0.72173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 7.78 37.16 0.29 -3.73 16 2 C 0.08 2.14 0.52 -155.66 -0.08 2.06 16 3 C -0.16 -4.17 7.77 37.16 0.29 -3.88 16 4 C -0.50 -13.41 8.01 -34.44 -0.28 -13.69 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -24.66 9.35 55.43 0.52 -24.14 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C -0.57 -11.94 4.68 37.16 0.17 -11.77 16 13 S 2.59 50.53 3.75 -107.50 -0.40 50.12 16 14 O -0.96 -20.42 11.69 -67.71 -0.79 -21.21 16 15 O -0.96 -20.58 14.40 -57.54 -0.83 -21.41 16 16 N -1.00 -14.65 3.26 -107.25 -0.35 -15.00 16 17 C 0.09 1.02 6.51 -3.53 -0.02 1.00 16 18 C 0.04 0.38 6.99 37.31 0.26 0.64 16 19 O -0.37 -3.87 10.74 -35.23 -0.38 -4.25 16 20 C 0.06 0.61 6.27 37.31 0.23 0.85 16 21 C 0.13 1.65 3.50 -68.57 -0.24 1.41 16 22 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 23 C 0.49 7.08 4.64 36.01 0.17 7.25 16 24 O -0.50 -8.74 12.52 -26.49 -0.33 -9.07 16 25 O -0.50 -6.08 13.42 -41.27 -0.55 -6.64 16 26 H 0.02 0.56 5.46 -51.93 -0.28 0.27 16 27 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 28 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.10 2.60 6.07 -51.93 -0.32 2.29 16 31 H 0.02 0.59 5.46 -51.93 -0.28 0.31 16 32 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 34 H 0.15 3.01 5.47 -51.92 -0.28 2.72 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.11 1.22 7.20 -51.93 -0.37 0.84 16 37 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.42 3.69 9.10 45.56 0.41 4.10 16 LS Contribution 325.95 15.07 4.91 4.91 Total: -1.00 -34.38 325.95 -7.31 -41.69 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -4.78 Total: 7.21 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 0.70 Total: -18.24 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.17 Total: -39.13 kcal Atomic # 8 Polarization: -59.68 SS G_CDS: -2.88 Total: -62.57 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 50.53 SS G_CDS: -0.40 Total: 50.12 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.38 -7.31 -41.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594682725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.837 kcal (2) G-P(sol) polarization free energy of solvation -34.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds