Wall clock time and date at job start Fri Apr 10 2020 18:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47078 * 2 1 4 4 C 1.50695 * 109.47306 * 239.99929 * 2 1 3 5 5 H 1.08002 * 120.00191 * 239.99650 * 4 2 1 6 6 C 1.37878 * 119.99959 * 60.00215 * 4 2 1 7 7 N 1.31513 * 120.00339 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99835 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47262 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47247 * 119.99696 * 8 6 4 11 11 H 1.48502 * 109.47149 * 239.99423 * 8 6 4 12 12 C 1.52998 * 109.47162 * 119.99548 * 2 1 3 13 13 S 1.81396 * 109.47108 * 300.00457 * 12 2 1 14 14 O 1.42097 * 110.54484 * 68.37499 * 13 12 2 15 15 O 1.42099 * 110.54537 * 291.62188 * 13 12 2 16 16 N 1.65607 * 104.44929 * 179.97438 * 13 12 2 17 17 C 1.47156 * 120.97848 * 90.94513 * 16 13 12 18 18 C 1.53301 * 108.38312 * 230.55805 * 17 16 13 19 19 O 1.42967 * 109.22147 * 307.70103 * 18 17 16 20 20 C 1.42963 * 114.16688 * 62.58122 * 19 18 17 21 21 C 1.47145 * 120.98323 * 270.97132 * 16 13 12 22 22 H 1.08999 * 109.68353 * 249.16286 * 21 16 13 23 23 C 1.50706 * 109.68438 * 9.68114 * 21 16 13 24 24 O 1.20827 * 119.99765 * 50.51565 * 23 21 16 25 25 O 1.34228 * 119.99750 * 230.52175 * 23 21 16 26 26 H 1.09000 * 109.47245 * 299.99990 * 1 2 3 27 27 H 1.09000 * 109.46913 * 60.00215 * 1 2 3 28 28 H 1.09000 * 109.46992 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47317 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.47034 * 300.00371 * 3 2 1 31 31 H 1.08997 * 109.47521 * 59.99301 * 3 2 1 32 32 H 0.96991 * 120.00204 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47248 * 180.02562 * 12 2 1 34 34 H 1.09000 * 109.46728 * 60.00376 * 12 2 1 35 35 H 1.09001 * 109.67829 * 110.83541 * 17 16 13 36 36 H 1.09000 * 109.68433 * 350.28051 * 17 16 13 37 37 H 1.09000 * 109.51161 * 187.77554 * 18 17 16 38 38 H 1.08992 * 109.51077 * 67.62358 * 18 17 16 39 39 H 1.09002 * 109.50981 * 57.34214 * 20 19 18 40 40 H 1.09001 * 109.50688 * 177.49483 * 20 19 18 41 41 H 0.96698 * 116.99511 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6035 8 14 2.3215 -1.1204 -4.0078 9 1 3.1465 -2.2870 -3.6037 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1874 -4.8165 12 6 2.0400 -0.7211 1.2493 13 16 1.4353 0.1340 2.7303 14 8 0.0279 -0.0182 2.8543 15 8 2.0478 1.4102 2.8544 16 7 2.0529 -0.7406 3.9937 17 6 3.3565 -0.3997 4.5853 18 6 4.2051 -1.6746 4.6526 19 8 3.4592 -2.7024 5.3092 20 6 2.2629 -3.0846 4.6261 21 6 1.3148 -1.8819 4.5574 22 1 0.9638 -1.6335 5.5590 23 6 0.1386 -2.2117 3.6747 24 8 0.2975 -2.3563 2.4857 25 8 -1.0853 -2.3446 4.2094 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 0.7083 1.1608 -3.4844 33 1 3.1300 -0.7208 1.2495 34 1 1.6767 -1.7488 1.2493 35 1 3.2110 -0.0020 5.5896 36 1 3.8582 0.3430 3.9649 37 1 5.1192 -1.4744 5.2117 38 1 4.4584 -1.9970 3.6428 39 1 2.5092 -3.4122 3.6161 40 1 1.7796 -3.8988 5.1662 41 1 -1.8085 -2.5562 3.6034 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594682725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:31 Heat of formation + Delta-G solvation = -209.792197 kcal Electronic energy + Delta-G solvation = -28194.811900 eV Core-core repulsion = 24202.116618 eV Total energy + Delta-G solvation = -3992.695282 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.80372 -39.96896 -38.28408 -38.16935 -37.13535 -37.07146 -35.91725 -33.65022 -32.89142 -28.74243 -28.14370 -27.73339 -27.28153 -26.36736 -23.48536 -22.44436 -21.25491 -20.01667 -19.45264 -19.08925 -18.12949 -17.95277 -17.49153 -17.08123 -16.88569 -16.69028 -16.37857 -16.29955 -15.91384 -15.51086 -14.99612 -14.84554 -14.69534 -14.45938 -14.00789 -13.94219 -13.63691 -13.25907 -13.17538 -12.99700 -12.93610 -12.80357 -12.62463 -12.46143 -12.38391 -12.27149 -12.17971 -12.07113 -11.87427 -11.66883 -11.55330 -11.46593 -11.14215 -10.62091 -10.44788 -10.01108 -8.05592 -6.23945 -0.79837 0.92547 1.40292 1.42599 1.51918 1.53263 1.84966 2.41868 2.75320 2.84692 3.04100 3.16857 3.45002 3.60986 3.94302 3.99124 4.07823 4.09445 4.19055 4.27832 4.46668 4.51796 4.57420 4.62347 4.80816 4.84280 4.88652 4.92182 4.96890 5.04035 5.24700 5.33302 5.48142 5.60868 5.70991 5.94082 5.98390 6.08641 6.32134 6.79977 6.88004 7.43775 8.94819 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.017529 B = 0.005122 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.938517 B = 5465.540532 C = 5587.735921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.073 3.927 3 C -0.159 4.159 4 C -0.515 4.515 5 H 0.059 0.941 6 C 0.017 3.983 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.280 1.280 12 C -0.578 4.578 13 S 2.605 3.395 14 O -0.981 6.981 15 O -0.983 6.983 16 N -1.000 6.000 17 C 0.078 3.922 18 C 0.041 3.959 19 O -0.369 6.369 20 C 0.063 3.937 21 C 0.127 3.873 22 H 0.138 0.862 23 C 0.482 3.518 24 O -0.533 6.533 25 O -0.495 6.495 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.034 0.966 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.028 0.972 32 H 0.262 0.738 33 H 0.126 0.874 34 H 0.147 0.853 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.145 0.855 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.145 0.855 41 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.980 -8.151 17.446 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.071 3.929 3 C -0.217 4.217 4 C -0.554 4.554 5 H 0.077 0.923 6 C -0.182 4.182 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.191 1.191 10 H -0.209 1.209 11 H -0.205 1.205 12 C -0.712 4.712 13 S 2.706 3.294 14 O -0.971 6.971 15 O -0.973 6.973 16 N -0.841 5.841 17 C -0.045 4.045 18 C -0.037 4.037 19 O -0.287 6.287 20 C -0.016 4.016 21 C 0.019 3.981 22 H 0.156 0.844 23 C 0.325 3.675 24 O -0.424 6.424 25 O -0.307 6.307 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.144 0.856 34 H 0.164 0.836 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.162 0.838 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.162 0.838 41 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 3.752 -7.269 17.585 19.394 hybrid contribution -0.336 -0.454 -2.173 2.245 sum 3.416 -7.723 15.411 17.573 Atomic orbital electron populations 1.22061 0.97755 0.99988 1.00588 1.17877 0.92325 0.91863 0.90801 1.22217 0.99900 0.98422 1.01162 1.21285 1.31539 1.12093 0.90469 0.92307 1.25688 0.95176 0.95685 1.01658 1.69946 1.37253 1.23786 1.23824 0.85548 0.78109 0.78756 0.79488 1.19073 1.20862 1.20547 1.30622 1.11237 1.14508 1.14783 1.05116 0.74160 0.74352 0.75767 1.93435 1.31529 1.86415 1.85741 1.93493 1.78415 1.39238 1.86176 1.57895 1.31777 1.44492 1.49961 1.22531 0.81110 0.99361 1.01543 1.23288 0.94913 0.85827 0.99687 1.87995 1.35038 1.55944 1.49685 1.22991 0.85117 0.93529 0.99929 1.21371 0.88699 0.89895 0.98120 0.84449 1.23094 0.85244 0.72144 0.87056 1.90758 1.85556 1.48123 1.17920 1.84317 1.17974 1.81847 1.46568 0.95506 0.91366 0.94665 0.93923 0.90907 0.95319 0.92864 0.85606 0.83567 0.87911 0.87739 0.83783 0.91926 0.91641 0.83785 0.70704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.70 7.78 71.98 0.56 -7.14 16 2 C 0.07 3.74 0.52 -52.93 -0.03 3.71 16 3 C -0.16 -8.19 7.77 71.98 0.56 -7.63 16 4 C -0.51 -28.06 8.01 25.60 0.21 -27.85 16 5 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 6 C 0.02 0.93 5.15 84.66 0.44 1.37 16 7 N -0.91 -51.64 9.35 21.45 0.20 -51.44 16 8 Si 0.96 43.23 29.54 68.60 2.03 45.25 16 9 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 C -0.58 -24.10 4.68 71.98 0.34 -23.77 16 13 S 2.61 100.18 3.75 -56.49 -0.21 99.96 16 14 O -0.98 -41.50 11.69 -117.93 -1.38 -42.88 16 15 O -0.98 -41.57 14.40 -127.65 -1.84 -43.41 16 16 N -1.00 -27.22 3.26 -493.23 -1.61 -28.83 16 17 C 0.08 1.57 6.51 86.36 0.56 2.13 16 18 C 0.04 0.63 6.99 72.08 0.50 1.13 16 19 O -0.37 -6.44 10.74 -148.98 -1.60 -8.04 16 20 C 0.06 1.10 6.27 72.08 0.45 1.55 16 21 C 0.13 2.86 3.50 44.22 0.15 3.02 16 22 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 23 C 0.48 13.39 4.64 71.24 0.33 13.72 16 24 O -0.53 -18.55 12.52 29.36 0.37 -18.19 16 25 O -0.49 -11.23 13.42 -49.47 -0.66 -11.90 16 26 H 0.03 1.34 5.46 -2.39 -0.01 1.33 16 27 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 28 H 0.03 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.07 4.06 6.07 -2.38 -0.01 4.05 16 31 H 0.03 1.41 5.46 -2.39 -0.01 1.39 16 32 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 33 H 0.13 4.66 8.14 -2.39 -0.02 4.64 16 34 H 0.15 6.08 5.47 -2.39 -0.01 6.06 16 35 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.10 2.17 7.20 -2.39 -0.02 2.15 16 37 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16 40 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.43 7.16 9.10 -74.06 -0.67 6.48 16 Total: -1.00 -74.09 325.95 -0.24 -74.33 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.39 Total: 24.89 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 4.07 Total: -39.77 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -1.41 Total: -80.27 kcal Atomic # 8 Polarization: -119.29 SS G_CDS: -5.11 Total: -124.40 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 100.18 SS G_CDS: -0.21 Total: 99.96 kcal Total: -74.09 -0.24 -74.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594682725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.463 kcal (2) G-P(sol) polarization free energy of solvation -74.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds