Wall clock time and date at job start Fri Apr 10 2020 18:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.34510 * 125.78853 * 2 1 4 4 C 1.41380 * 106.83684 * 180.02562 * 3 2 1 5 5 C 1.34506 * 106.84582 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.79434 * 180.02562 * 5 4 3 7 7 C 1.52997 * 110.53808 * 270.70416 * 6 5 4 8 8 N 1.47315 * 110.59748 * 33.53414 * 6 5 4 9 9 C 1.34867 * 106.43881 * 118.72454 * 8 6 5 10 10 O 1.21540 * 123.72769 * 179.97438 * 9 8 6 11 11 N 1.33785 * 112.50330 * 359.86768 * 9 8 6 12 12 C 1.46501 * 124.18151 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.47152 * 270.04110 * 12 11 9 14 14 O 1.21293 * 119.99859 * 0.02562 * 13 12 11 15 15 N 1.34771 * 119.99823 * 179.97438 * 13 12 11 16 16 C 1.37107 * 120.00027 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99766 * 359.97438 * 16 15 13 18 18 C 1.38941 * 119.99926 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00384 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99931 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46878 * 59.99814 * 20 18 16 22 22 H 1.48492 * 109.47350 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46924 * 299.99899 * 20 18 16 24 24 C 1.34772 * 111.64490 * 0.08482 * 11 9 8 25 25 O 1.21232 * 127.15663 * 179.97438 * 24 11 9 26 26 O 1.34308 * 125.78403 * 180.34663 * 2 1 3 27 27 H 1.09000 * 109.46887 * 90.00485 * 1 2 3 28 28 H 1.09003 * 109.47052 * 210.00322 * 1 2 3 29 29 H 1.08998 * 109.46901 * 330.00363 * 1 2 3 30 30 H 1.08003 * 126.58172 * 0.04966 * 3 2 1 31 31 H 1.08000 * 126.57695 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47153 * 59.99661 * 7 6 5 33 33 H 1.09001 * 109.46832 * 299.99852 * 7 6 5 34 34 H 1.09004 * 109.47261 * 179.97438 * 7 6 5 35 35 H 0.96998 * 126.69135 * 298.65460 * 8 6 5 36 36 H 1.09006 * 109.46785 * 30.03869 * 12 11 9 37 37 H 1.08998 * 109.47561 * 150.03730 * 12 11 9 38 38 H 0.97004 * 120.00373 * 0.02562 * 15 13 12 39 39 H 0.97001 * 119.99959 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0004 6 6 4.7706 -1.6379 -0.0003 7 6 5.2048 -1.9540 -1.4329 8 7 5.8857 -1.0491 0.7613 9 6 6.1369 -1.8922 1.7836 10 8 7.0051 -1.7067 2.6136 11 7 5.3229 -2.9540 1.7835 12 6 5.3716 -4.0285 2.7781 13 6 6.3145 -5.1060 2.3078 14 8 6.8896 -4.9876 1.2465 15 7 6.5194 -6.2005 3.0670 16 6 7.3776 -7.1805 2.6395 17 1 7.8891 -7.0755 1.6941 18 6 7.5885 -8.3091 3.4219 19 7 6.9658 -8.4371 4.5720 20 14 8.7573 -9.6447 2.8390 21 1 10.1158 -9.0713 2.6629 22 1 8.8071 -10.7336 3.8474 23 1 8.2786 -10.1906 1.5436 24 6 4.4533 -2.9136 0.7546 25 8 3.5960 -3.7283 0.4880 26 8 2.2924 -1.0895 -0.0066 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.9666 2.1204 0.0008 31 1 4.5212 1.2432 -0.0004 32 1 5.4763 -1.0295 -1.9426 33 1 4.3830 -2.4340 -1.9641 34 1 6.0650 -2.6233 -1.4125 35 1 6.3476 -0.2193 0.5644 36 1 5.7230 -3.6278 3.7290 37 1 4.3745 -4.4494 2.9075 38 1 6.0597 -6.2949 3.9160 39 1 7.1128 -9.2252 5.1181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728148505.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:00 Heat of formation + Delta-G solvation = -52.815774 kcal Electronic energy + Delta-G solvation = -27282.006123 eV Core-core repulsion = 23192.966649 eV Total energy + Delta-G solvation = -4089.039473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.120 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -43.15253 -42.11360 -38.45073 -38.21409 -36.46315 -35.01132 -33.90915 -33.44149 -32.16352 -31.32694 -30.62228 -28.52310 -26.87789 -25.01521 -24.24249 -22.72549 -21.83963 -21.16204 -20.24849 -19.31217 -18.20935 -17.82945 -17.56093 -16.89969 -16.42022 -15.84185 -15.54749 -15.51215 -15.30438 -14.74980 -14.42416 -14.01170 -13.94908 -13.76935 -13.69857 -13.48606 -13.28519 -13.09169 -13.06515 -12.68520 -12.52161 -12.33318 -12.04772 -11.71596 -11.59355 -11.04474 -10.76525 -10.46075 -10.26898 -10.22226 -10.07102 -9.93191 -9.72751 -9.56294 -8.61677 -8.43261 -8.03958 -6.45945 -3.87259 1.32077 1.69144 2.13167 2.28710 2.50697 3.11437 3.17342 3.18362 3.25099 3.30011 3.76380 3.89092 4.07941 4.15496 4.50653 4.62327 4.74107 4.88507 5.03548 5.07461 5.13738 5.24057 5.32247 5.37054 5.39978 5.51274 5.55204 5.62401 5.67704 5.77691 5.82597 5.88572 6.17878 6.21611 6.71806 6.85862 7.14107 7.46073 7.51433 7.96679 8.19312 8.51924 9.10766 9.43760 9.93113 10.71148 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.024602 B = 0.003087 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.854058 B = 9068.712520 C = 9390.849327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.002 4.002 3 C -0.215 4.215 4 C -0.177 4.177 5 C -0.022 4.022 6 C 0.211 3.789 7 C -0.144 4.144 8 N -0.715 5.715 9 C 0.715 3.285 10 O -0.530 6.530 11 N -0.549 5.549 12 C 0.106 3.894 13 C 0.425 3.575 14 O -0.587 6.587 15 N -0.550 5.550 16 C -0.301 4.301 17 H 0.104 0.896 18 C 0.026 3.974 19 N -0.897 5.897 20 Si 0.933 3.067 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.273 1.273 24 C 0.539 3.461 25 O -0.447 6.447 26 O -0.156 6.156 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.439 0.561 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.395 0.605 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.474 19.084 -8.048 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 C -0.234 4.234 4 C -0.197 4.197 5 C -0.074 4.074 6 C 0.118 3.882 7 C -0.202 4.202 8 N -0.381 5.381 9 C 0.416 3.584 10 O -0.402 6.402 11 N -0.294 5.294 12 C -0.019 4.019 13 C 0.210 3.790 14 O -0.473 6.473 15 N -0.186 5.186 16 C -0.431 4.431 17 H 0.122 0.878 18 C -0.177 4.177 19 N -0.538 5.538 20 Si 0.760 3.240 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 C 0.324 3.676 25 O -0.315 6.315 26 O -0.051 6.051 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.169 0.831 31 H 0.168 0.832 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.284 0.716 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.228 0.772 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.193 18.221 -8.204 22.904 hybrid contribution 0.622 -0.164 0.245 0.688 sum -10.570 18.058 -7.959 22.387 Atomic orbital electron populations 1.20352 0.84816 1.04303 1.03735 1.22611 0.94225 0.84054 1.04417 1.21546 0.92259 0.99521 1.10063 1.21429 0.98552 0.92923 1.06778 1.21579 0.82729 0.93657 1.09442 1.19335 0.83596 0.89254 0.95968 1.22049 1.03915 1.03848 0.90345 1.45501 1.36394 1.26851 1.29402 1.15756 0.81085 0.79705 0.81846 1.91014 1.32866 1.76189 1.40095 1.45709 1.32954 1.22245 1.28457 1.21481 1.02623 0.86936 0.90861 1.19841 0.87317 0.84600 0.87252 1.90526 1.53159 1.79507 1.24079 1.41746 1.40055 1.16615 1.20155 1.19663 1.20491 0.96937 1.05969 0.87848 1.25292 0.98255 0.98741 0.95397 1.69601 1.42471 1.30034 1.11665 0.85882 0.80275 0.79568 0.78302 1.19799 1.20856 1.19798 1.20307 0.80674 0.86429 0.80217 1.90796 1.30951 1.42313 1.67407 1.84072 1.15315 1.34782 1.70946 0.89844 0.90220 0.89201 0.83124 0.83196 0.89974 0.89514 0.89472 0.71611 0.86801 0.87080 0.77171 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.42 36.01 0.38 -0.10 16 2 C 0.00 -0.02 7.32 -35.62 -0.26 -0.28 16 3 C -0.21 -1.97 10.81 -39.70 -0.43 -2.40 16 4 C -0.18 -1.75 10.41 -39.71 -0.41 -2.17 16 5 C -0.02 -0.27 5.94 -35.63 -0.21 -0.48 16 6 C 0.21 2.79 1.29 -133.24 -0.17 2.62 16 7 C -0.14 -1.60 8.96 37.16 0.33 -1.27 16 8 N -0.72 -9.08 5.59 -53.93 -0.30 -9.38 16 9 C 0.71 12.51 8.63 -87.72 -0.76 11.75 16 10 O -0.53 -10.81 17.48 5.33 0.09 -10.71 16 11 N -0.55 -10.09 2.09 -121.92 -0.26 -10.34 16 12 C 0.11 2.02 6.18 -5.19 -0.03 1.99 16 13 C 0.43 10.44 7.85 -10.99 -0.09 10.35 16 14 O -0.59 -16.36 16.01 5.55 0.09 -16.27 16 15 N -0.55 -14.19 5.29 -10.96 -0.06 -14.25 16 16 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 17 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 18 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 19 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 20 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 C 0.54 9.43 6.81 -10.55 -0.07 9.36 16 25 O -0.45 -8.80 17.63 5.60 0.10 -8.70 16 26 O -0.16 -2.07 10.29 5.68 0.06 -2.01 16 27 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.15 0.99 8.06 -52.48 -0.42 0.56 16 31 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.44 4.01 8.96 -40.82 -0.37 3.64 16 36 H 0.11 1.95 7.86 -51.93 -0.41 1.54 16 37 H 0.11 1.87 8.00 -51.93 -0.42 1.45 16 38 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 39 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 351.26 15.07 5.29 5.29 Total: -1.00 -36.26 351.26 -5.65 -41.91 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -4.40 Total: 10.69 kcal Atomic # 6 Polarization: 23.27 SS G_CDS: -1.97 Total: 21.31 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.11 Total: -57.66 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: 0.34 Total: -37.69 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.26 -5.65 -41.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728148505.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.907 kcal (2) G-P(sol) polarization free energy of solvation -36.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds