Wall clock time and date at job start Fri Apr 10 2020 18:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.34510 * 125.78853 * 2 1 4 4 C 1.41380 * 106.83684 * 180.02562 * 3 2 1 5 5 C 1.34506 * 106.84582 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.79434 * 180.02562 * 5 4 3 7 7 C 1.52997 * 110.53808 * 270.70416 * 6 5 4 8 8 N 1.47315 * 110.59748 * 33.53414 * 6 5 4 9 9 C 1.34867 * 106.43881 * 118.72454 * 8 6 5 10 10 O 1.21540 * 123.72769 * 179.97438 * 9 8 6 11 11 N 1.33785 * 112.50330 * 359.86768 * 9 8 6 12 12 C 1.46501 * 124.18151 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.47152 * 270.04110 * 12 11 9 14 14 O 1.21293 * 119.99859 * 0.02562 * 13 12 11 15 15 N 1.34771 * 119.99823 * 179.97438 * 13 12 11 16 16 C 1.37107 * 120.00027 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99766 * 359.97438 * 16 15 13 18 18 C 1.38941 * 119.99926 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00384 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99931 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46878 * 59.99814 * 20 18 16 22 22 H 1.48492 * 109.47350 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46924 * 299.99899 * 20 18 16 24 24 C 1.34772 * 111.64490 * 0.08482 * 11 9 8 25 25 O 1.21232 * 127.15663 * 179.97438 * 24 11 9 26 26 O 1.34308 * 125.78403 * 180.34663 * 2 1 3 27 27 H 1.09000 * 109.46887 * 90.00485 * 1 2 3 28 28 H 1.09003 * 109.47052 * 210.00322 * 1 2 3 29 29 H 1.08998 * 109.46901 * 330.00363 * 1 2 3 30 30 H 1.08003 * 126.58172 * 0.04966 * 3 2 1 31 31 H 1.08000 * 126.57695 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47153 * 59.99661 * 7 6 5 33 33 H 1.09001 * 109.46832 * 299.99852 * 7 6 5 34 34 H 1.09004 * 109.47261 * 179.97438 * 7 6 5 35 35 H 0.96998 * 126.69135 * 298.65460 * 8 6 5 36 36 H 1.09006 * 109.46785 * 30.03869 * 12 11 9 37 37 H 1.08998 * 109.47561 * 150.03730 * 12 11 9 38 38 H 0.97004 * 120.00373 * 0.02562 * 15 13 12 39 39 H 0.97001 * 119.99959 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0004 6 6 4.7706 -1.6379 -0.0003 7 6 5.2048 -1.9540 -1.4329 8 7 5.8857 -1.0491 0.7613 9 6 6.1369 -1.8922 1.7836 10 8 7.0051 -1.7067 2.6136 11 7 5.3229 -2.9540 1.7835 12 6 5.3716 -4.0285 2.7781 13 6 6.3145 -5.1060 2.3078 14 8 6.8896 -4.9876 1.2465 15 7 6.5194 -6.2005 3.0670 16 6 7.3776 -7.1805 2.6395 17 1 7.8891 -7.0755 1.6941 18 6 7.5885 -8.3091 3.4219 19 7 6.9658 -8.4371 4.5720 20 14 8.7573 -9.6447 2.8390 21 1 10.1158 -9.0713 2.6629 22 1 8.8071 -10.7336 3.8474 23 1 8.2786 -10.1906 1.5436 24 6 4.4533 -2.9136 0.7546 25 8 3.5960 -3.7283 0.4880 26 8 2.2924 -1.0895 -0.0066 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.9666 2.1204 0.0008 31 1 4.5212 1.2432 -0.0004 32 1 5.4763 -1.0295 -1.9426 33 1 4.3830 -2.4340 -1.9641 34 1 6.0650 -2.6233 -1.4125 35 1 6.3476 -0.2193 0.5644 36 1 5.7230 -3.6278 3.7290 37 1 4.3745 -4.4494 2.9075 38 1 6.0597 -6.2949 3.9160 39 1 7.1128 -9.2252 5.1181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728148505.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:58 Heat of formation + Delta-G solvation = -80.168570 kcal Electronic energy + Delta-G solvation = -27283.192229 eV Core-core repulsion = 23192.966649 eV Total energy + Delta-G solvation = -4090.225580 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.120 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -44.14382 -43.24805 -40.15794 -39.87137 -37.78303 -36.53662 -35.88627 -34.18616 -33.44098 -32.99651 -31.52658 -30.12757 -27.62527 -26.87680 -25.55613 -23.89902 -22.75123 -22.47593 -21.19898 -21.01016 -20.06254 -19.25872 -18.81434 -18.32771 -17.48027 -17.17331 -17.03214 -16.79706 -16.66736 -16.39453 -15.83261 -15.75849 -15.51600 -15.37374 -14.77219 -14.46396 -14.04411 -13.99999 -13.78378 -13.72735 -13.60470 -13.57623 -13.41970 -13.20698 -12.90316 -12.71165 -12.51299 -12.18781 -12.11870 -11.59625 -11.56520 -11.47209 -10.91056 -10.88768 -10.37193 -10.12442 -9.38197 -8.53257 -6.03540 0.30499 0.57421 0.86852 1.35303 1.39560 1.49434 1.52454 1.58924 1.80220 1.86031 2.07959 2.26720 2.69908 3.05360 3.11576 3.22300 3.54672 3.78744 3.96569 4.01575 4.05933 4.14620 4.30068 4.37753 4.48756 4.52910 4.60309 4.72157 4.77149 4.80581 4.95508 5.00456 5.18370 5.34467 5.57548 5.62813 5.80741 5.87026 6.11498 6.13255 6.45925 6.90469 7.01395 7.38948 7.92184 8.63460 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.024602 B = 0.003087 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.854058 B = 9068.712520 C = 9390.849327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.013 4.013 3 C -0.217 4.217 4 C -0.160 4.160 5 C -0.055 4.055 6 C 0.223 3.777 7 C -0.141 4.141 8 N -0.687 5.687 9 C 0.710 3.290 10 O -0.564 6.564 11 N -0.559 5.559 12 C 0.113 3.887 13 C 0.421 3.579 14 O -0.626 6.626 15 N -0.557 5.557 16 C -0.339 4.339 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.914 5.914 20 Si 0.996 3.004 21 H -0.271 1.271 22 H -0.267 1.267 23 H -0.271 1.271 24 C 0.527 3.473 25 O -0.479 6.479 26 O -0.188 6.188 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.180 0.820 31 H 0.178 0.822 32 H 0.121 0.879 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.457 0.543 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.400 0.600 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.094 20.952 -8.578 25.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.063 4.063 3 C -0.236 4.236 4 C -0.179 4.179 5 C -0.106 4.106 6 C 0.131 3.869 7 C -0.199 4.199 8 N -0.354 5.354 9 C 0.411 3.589 10 O -0.439 6.439 11 N -0.304 5.304 12 C -0.013 4.013 13 C 0.207 3.793 14 O -0.513 6.513 15 N -0.193 5.193 16 C -0.468 4.468 17 H 0.098 0.902 18 C -0.209 4.209 19 N -0.554 5.554 20 Si 0.819 3.181 21 H -0.196 1.196 22 H -0.191 1.191 23 H -0.196 1.196 24 C 0.314 3.686 25 O -0.348 6.348 26 O -0.085 6.085 27 H 0.116 0.884 28 H 0.091 0.909 29 H 0.133 0.867 30 H 0.198 0.802 31 H 0.195 0.805 32 H 0.140 0.860 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.306 0.694 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.235 0.765 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.833 20.142 -8.744 24.944 hybrid contribution 0.716 -0.687 0.397 1.069 sum -11.117 19.455 -8.347 23.912 Atomic orbital electron populations 1.20551 0.82607 1.05186 1.04935 1.23423 0.95666 0.83729 1.03503 1.21944 0.91671 1.00632 1.09320 1.21829 1.00028 0.91964 1.04077 1.21375 0.82225 0.94077 1.12912 1.19267 0.84379 0.87301 0.95918 1.22100 1.03013 1.05428 0.89322 1.45321 1.35955 1.26610 1.27556 1.15924 0.80581 0.79992 0.82403 1.90986 1.34246 1.77015 1.41685 1.45881 1.33508 1.22230 1.28746 1.21400 1.02193 0.85897 0.91766 1.20744 0.87108 0.85004 0.86418 1.90486 1.54731 1.80410 1.25697 1.41788 1.40078 1.16853 1.20550 1.19645 1.22329 0.98803 1.06058 0.90198 1.26104 0.99344 1.00156 0.95276 1.69658 1.42833 1.30776 1.12090 0.84952 0.77993 0.76986 0.78186 1.19632 1.19090 1.19574 1.21126 0.79814 0.87600 0.80049 1.90760 1.32095 1.43853 1.68105 1.84048 1.15994 1.36571 1.71840 0.88402 0.90891 0.86721 0.80227 0.80497 0.86020 0.89654 0.91367 0.69360 0.84777 0.84927 0.76547 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.42 71.24 0.74 -0.06 16 2 C -0.01 -0.24 7.32 24.83 0.18 -0.06 16 3 C -0.22 -3.27 10.81 22.19 0.24 -3.03 16 4 C -0.16 -2.66 10.41 22.19 0.23 -2.43 16 5 C -0.06 -1.27 5.94 24.83 0.15 -1.12 16 6 C 0.22 5.72 1.29 2.24 0.00 5.72 16 7 C -0.14 -3.00 8.96 71.98 0.65 -2.36 16 8 N -0.69 -16.55 5.59 -442.76 -2.47 -19.03 16 9 C 0.71 24.76 8.63 179.33 1.55 26.31 16 10 O -0.56 -23.12 17.48 -3.84 -0.07 -23.19 16 11 N -0.56 -20.82 2.09 -776.88 -1.63 -22.44 16 12 C 0.11 4.37 6.18 85.63 0.53 4.89 16 13 C 0.42 21.34 7.85 87.66 0.69 22.02 16 14 O -0.63 -36.21 16.01 -3.07 -0.05 -36.26 16 15 N -0.56 -29.61 5.29 -306.99 -1.62 -31.24 16 16 C -0.34 -19.71 9.68 84.04 0.81 -18.89 16 17 H 0.08 4.94 7.16 -2.91 -0.02 4.91 16 18 C -0.01 -0.43 5.50 84.92 0.47 0.04 16 19 N -0.91 -49.64 13.05 21.66 0.28 -49.36 16 20 Si 1.00 43.36 29.55 68.60 2.03 45.39 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 24 C 0.53 18.73 6.81 87.94 0.60 19.33 16 25 O -0.48 -19.44 17.63 -2.88 -0.05 -19.49 16 26 O -0.19 -4.84 10.29 -2.61 -0.03 -4.87 16 27 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 31 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 32 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 34 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.46 7.28 8.96 -92.71 -0.83 6.44 16 36 H 0.13 4.62 7.86 -2.38 -0.02 4.61 16 37 H 0.13 4.52 8.00 -2.39 -0.02 4.50 16 38 H 0.40 19.95 7.90 -92.71 -0.73 19.22 16 39 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -81.16 351.26 2.79 -78.36 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: -0.43 Total: 31.76 kcal Atomic # 6 Polarization: 43.52 SS G_CDS: 6.83 Total: 50.36 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -5.44 Total: -122.06 kcal Atomic # 8 Polarization: -83.62 SS G_CDS: -0.19 Total: -83.81 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -81.16 2.79 -78.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728148505.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.804 kcal (2) G-P(sol) polarization free energy of solvation -81.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds