Wall clock time and date at job start Fri Apr 10 2020 18:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34516 * 125.79282 * 2 1 4 4 C 1.41385 * 106.83919 * 179.75103 * 3 2 1 5 5 C 1.34513 * 106.84306 * 0.37018 * 4 3 2 6 6 C 1.50692 * 125.79052 * 179.88965 * 5 4 3 7 7 C 1.52998 * 110.65709 * 86.80287 * 6 5 4 8 8 N 1.47313 * 110.60190 * 323.89197 * 6 5 4 9 9 C 1.34531 * 106.62181 * 241.25450 * 8 6 5 10 10 O 1.21537 * 123.77069 * 180.20683 * 9 8 6 11 11 N 1.33789 * 112.45283 * 0.37877 * 9 8 6 12 12 C 1.46503 * 124.17555 * 179.87109 * 11 9 8 13 13 C 1.50706 * 109.46623 * 269.69627 * 12 11 9 14 14 O 1.21288 * 120.00284 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99730 * 179.97438 * 13 12 11 16 16 C 1.37095 * 119.99910 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99959 * 0.02562 * 16 15 13 18 18 C 1.38950 * 120.00053 * 180.02562 * 16 15 13 19 19 N 1.31413 * 119.99930 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99918 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00155 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00503 * 20 18 16 24 24 C 1.34764 * 111.64839 * 359.59809 * 11 9 8 25 25 O 1.21233 * 127.16123 * 180.27103 * 24 11 9 26 26 O 1.34308 * 108.42088 * 359.62887 * 5 4 3 27 27 H 1.08994 * 109.47588 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47048 * 300.00117 * 1 2 3 29 29 H 1.09007 * 109.46769 * 59.99467 * 1 2 3 30 30 H 1.07999 * 126.57722 * 359.96413 * 3 2 1 31 31 H 1.08003 * 126.57394 * 180.24075 * 4 3 2 32 32 H 1.09006 * 109.47579 * 182.21210 * 7 6 5 33 33 H 1.09001 * 109.47490 * 302.21531 * 7 6 5 34 34 H 1.09006 * 109.47028 * 62.21419 * 7 6 5 35 35 H 0.97003 * 126.69073 * 61.50007 * 8 6 5 36 36 H 1.08996 * 109.47403 * 149.70102 * 12 11 9 37 37 H 1.09002 * 109.47027 * 29.69301 * 12 11 9 38 38 H 0.96996 * 119.99887 * 0.02562 * 15 13 12 39 39 H 0.97001 * 119.99781 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6319 0.0059 5 6 3.5814 -0.7123 0.0008 6 6 4.7705 -1.6380 0.0018 7 6 5.2401 -1.9118 1.4320 8 7 5.8668 -1.0744 -0.8047 9 6 6.0966 -1.9454 -1.8039 10 8 6.9476 -1.7859 -2.6568 11 7 5.2812 -3.0050 -1.7557 12 6 5.3071 -4.1078 -2.7198 13 6 4.3688 -3.8016 -3.8586 14 8 3.7407 -2.7640 -3.8647 15 7 4.2284 -4.6802 -4.8709 16 6 3.3745 -4.4018 -5.9067 17 1 2.8146 -3.4783 -5.9117 18 6 3.2294 -5.3079 -6.9501 19 7 3.9103 -6.4318 -6.9439 20 14 2.0664 -4.9283 -8.3618 21 1 2.0930 -6.0458 -9.3393 22 1 0.6874 -4.7625 -7.8362 23 1 2.4946 -3.6744 -9.0325 24 6 4.4370 -2.9354 -0.7076 25 8 3.5879 -3.7429 -0.3963 26 8 2.2924 -1.0895 0.0005 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 1.9666 2.1204 -0.0005 31 1 4.5213 1.2432 0.0111 32 1 6.1232 -2.5504 1.4085 33 1 5.4865 -0.9689 1.9203 34 1 4.4453 -2.4111 1.9861 35 1 6.3346 -0.2398 -0.6443 36 1 4.9928 -5.0282 -2.2276 37 1 6.3193 -4.2295 -3.1056 38 1 4.7310 -5.5098 -4.8663 39 1 4.5145 -6.6288 -6.2110 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728148506.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:04 Heat of formation + Delta-G solvation = -81.284509 kcal Electronic energy + Delta-G solvation = -27628.810068 eV Core-core repulsion = 23538.536098 eV Total energy + Delta-G solvation = -4090.273970 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.120 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -44.18961 -43.30278 -40.35992 -39.92542 -37.82993 -36.79068 -36.12000 -34.23698 -33.37512 -33.03090 -31.54950 -30.11497 -27.65509 -26.67688 -25.59423 -23.97382 -22.80920 -22.63455 -21.42613 -21.12111 -20.12302 -19.38055 -19.00821 -18.51227 -17.54196 -17.36949 -17.12183 -16.84207 -16.74239 -16.35471 -15.96987 -15.73888 -15.50662 -15.42155 -15.00573 -14.60479 -14.09445 -14.02713 -13.83450 -13.77949 -13.58758 -13.50566 -13.47416 -13.18698 -12.83701 -12.79824 -12.21341 -11.99356 -11.93527 -11.64355 -11.63050 -11.51287 -10.95987 -10.92107 -10.45040 -10.22814 -9.41348 -9.01661 -6.16664 0.23611 0.56623 0.79553 1.42332 1.49765 1.51056 1.62819 1.72881 1.80203 1.82838 2.00009 2.36659 2.66932 2.87746 3.06829 3.18665 3.54869 3.72859 3.85464 3.90823 4.01052 4.03300 4.19404 4.30813 4.45488 4.52669 4.60866 4.65998 4.73322 4.74489 4.91829 4.99187 5.12760 5.49617 5.52602 5.58823 5.76305 5.85723 6.07155 6.08303 6.42466 6.57951 6.86843 7.27360 7.71375 8.45626 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.013925 B = 0.004070 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.220867 B = 6878.498380 C = 8013.349599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.019 4.019 3 C -0.220 4.220 4 C -0.165 4.165 5 C -0.060 4.060 6 C 0.221 3.779 7 C -0.135 4.135 8 N -0.686 5.686 9 C 0.709 3.291 10 O -0.566 6.566 11 N -0.560 5.560 12 C 0.113 3.887 13 C 0.422 3.578 14 O -0.624 6.624 15 N -0.570 5.570 16 C -0.414 4.414 17 H 0.070 0.930 18 C -0.035 4.035 19 N -0.907 5.907 20 Si 1.134 2.866 21 H -0.267 1.267 22 H -0.273 1.273 23 H -0.273 1.273 24 C 0.526 3.474 25 O -0.479 6.479 26 O -0.192 6.192 27 H 0.068 0.932 28 H 0.117 0.883 29 H 0.097 0.903 30 H 0.180 0.820 31 H 0.181 0.819 32 H 0.093 0.907 33 H 0.118 0.882 34 H 0.085 0.915 35 H 0.457 0.543 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.389 0.611 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.496 12.233 20.252 23.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.069 4.069 3 C -0.238 4.238 4 C -0.184 4.184 5 C -0.110 4.110 6 C 0.130 3.870 7 C -0.193 4.193 8 N -0.353 5.353 9 C 0.410 3.590 10 O -0.441 6.441 11 N -0.305 5.305 12 C -0.012 4.012 13 C 0.209 3.791 14 O -0.511 6.511 15 N -0.208 5.208 16 C -0.543 4.543 17 H 0.089 0.911 18 C -0.234 4.234 19 N -0.545 5.545 20 Si 0.953 3.047 21 H -0.191 1.191 22 H -0.198 1.198 23 H -0.199 1.199 24 C 0.313 3.687 25 O -0.348 6.348 26 O -0.089 6.089 27 H 0.087 0.913 28 H 0.135 0.865 29 H 0.116 0.884 30 H 0.198 0.802 31 H 0.199 0.801 32 H 0.112 0.888 33 H 0.136 0.864 34 H 0.104 0.896 35 H 0.306 0.694 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.224 0.776 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.374 11.570 18.466 21.795 hybrid contribution 1.025 0.404 1.070 1.536 sum 1.399 11.974 19.537 22.956 Atomic orbital electron populations 1.20539 0.82880 1.04405 1.05491 1.23414 0.95752 0.83908 1.03831 1.21939 0.91974 1.00538 1.09376 1.21832 0.99886 0.92118 1.04543 1.21695 0.82540 0.94615 1.12182 1.19492 0.84162 0.86894 0.96477 1.22132 1.03340 1.06200 0.87579 1.45300 1.36813 1.25195 1.28013 1.15860 0.80820 0.80241 0.82043 1.90989 1.36839 1.77382 1.38889 1.45881 1.34707 1.22761 1.27131 1.21418 1.02375 0.89215 0.88212 1.20870 0.87163 0.85404 0.85680 1.90519 1.51975 1.28282 1.80314 1.41833 1.39859 1.19417 1.19719 1.20509 1.23466 1.08109 1.02218 0.91141 1.27895 1.01088 0.91962 1.02484 1.70966 1.25877 1.23899 1.33775 0.82648 0.73504 0.76499 0.72081 1.19149 1.19820 1.19863 1.21165 0.79339 0.87954 0.80198 1.90762 1.30170 1.45455 1.68404 1.84051 1.16434 1.36685 1.71707 0.91336 0.86468 0.88439 0.80234 0.80139 0.88801 0.86378 0.89585 0.69385 0.84409 0.84348 0.77596 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.42 71.24 0.74 -0.63 16 2 C -0.02 -0.48 7.32 24.83 0.18 -0.30 16 3 C -0.22 -4.69 10.81 22.19 0.24 -4.45 16 4 C -0.16 -3.55 10.45 22.19 0.23 -3.32 16 5 C -0.06 -1.64 5.95 24.83 0.15 -1.49 16 6 C 0.22 5.51 1.29 2.23 0.00 5.51 16 7 C -0.13 -2.00 8.97 71.98 0.65 -1.35 16 8 N -0.69 -16.11 5.59 -443.26 -2.48 -18.59 16 9 C 0.71 24.28 8.62 179.44 1.55 25.83 16 10 O -0.57 -22.89 17.48 -3.83 -0.07 -22.95 16 11 N -0.56 -20.42 2.09 -777.20 -1.63 -22.05 16 12 C 0.11 4.27 6.18 85.63 0.53 4.80 16 13 C 0.42 21.67 7.85 87.66 0.69 22.36 16 14 O -0.62 -37.60 16.01 -3.05 -0.05 -37.65 16 15 N -0.57 -30.30 5.28 -306.98 -1.62 -31.93 16 16 C -0.41 -24.52 9.68 84.04 0.81 -23.71 16 17 H 0.07 4.52 7.16 -2.91 -0.02 4.50 16 18 C -0.03 -1.93 5.50 84.93 0.47 -1.47 16 19 N -0.91 -51.06 13.68 21.66 0.30 -50.76 16 20 Si 1.13 49.47 29.92 68.60 2.05 51.52 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 24 C 0.53 18.32 6.79 87.94 0.60 18.92 16 25 O -0.48 -19.14 17.62 -2.89 -0.05 -19.19 16 26 O -0.19 -6.29 10.25 -2.60 -0.03 -6.32 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.18 2.63 8.06 -2.91 -0.02 2.60 16 31 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.46 7.05 8.96 -92.71 -0.83 6.22 16 36 H 0.14 4.43 8.00 -2.39 -0.02 4.41 16 37 H 0.14 4.54 7.85 -2.39 -0.02 4.52 16 38 H 0.39 18.58 6.73 -92.71 -0.62 17.96 16 39 H 0.26 14.19 6.78 -92.71 -0.63 13.56 16 Total: -1.00 -88.30 349.54 3.08 -85.22 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: -0.18 Total: 32.01 kcal Atomic # 6 Polarization: 33.86 SS G_CDS: 6.83 Total: 40.69 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -5.43 Total: -123.33 kcal Atomic # 8 Polarization: -85.92 SS G_CDS: -0.19 Total: -86.11 kcal Atomic # 14 Polarization: 49.47 SS G_CDS: 2.05 Total: 51.52 kcal Total: -88.30 3.08 -85.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728148506.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.937 kcal (2) G-P(sol) polarization free energy of solvation -88.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds