Wall clock time and date at job start Fri Apr 10 2020 18:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34706 * 116.99916 * 2 1 4 4 O 1.21453 * 119.99999 * 0.02562 * 3 2 1 5 5 C 1.47851 * 120.00005 * 180.02562 * 3 2 1 6 6 C 1.39238 * 120.19926 * 305.28622 * 5 3 2 7 7 C 1.38234 * 119.99226 * 180.02562 * 6 5 3 8 8 C 1.38370 * 120.40912 * 0.02562 * 7 6 5 9 9 C 1.38227 * 120.40891 * 0.02562 * 8 7 6 10 10 C 1.39244 * 119.99719 * 359.97438 * 9 8 7 11 11 C 1.47841 * 120.20410 * 180.02562 * 10 9 8 12 12 O 1.21453 * 120.00225 * 173.77936 * 11 10 9 13 13 O 1.34707 * 119.99873 * 353.78233 * 11 10 9 14 14 C 1.45202 * 116.99899 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.46912 * 179.97438 * 14 13 11 16 16 O 1.21278 * 120.00350 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99679 * 180.02562 * 15 14 13 18 18 C 1.46505 * 120.00209 * 179.97438 * 17 15 14 19 19 C 1.50698 * 109.47488 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00004 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00034 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99893 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99967 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47049 * 90.00275 * 23 21 19 25 25 H 1.48497 * 109.46914 * 210.00142 * 23 21 19 26 26 H 1.48498 * 109.47245 * 330.00514 * 23 21 19 27 27 H 1.08990 * 109.47067 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46854 * 299.99502 * 1 2 3 29 29 H 1.08995 * 109.46930 * 59.99347 * 1 2 3 30 30 H 1.07997 * 120.00587 * 0.02562 * 6 5 3 31 31 H 1.07998 * 119.79582 * 179.72249 * 7 6 5 32 32 H 1.07993 * 119.79236 * 179.97438 * 8 7 6 33 33 H 1.08002 * 120.00206 * 180.02562 * 9 8 7 34 34 H 1.09003 * 109.46859 * 300.00069 * 14 13 11 35 35 H 1.09000 * 109.46994 * 59.99999 * 14 13 11 36 36 H 0.97005 * 120.00341 * 0.02562 * 17 15 14 37 37 H 1.08997 * 109.47008 * 300.00639 * 18 17 15 38 38 H 1.09000 * 109.46798 * 60.00181 * 18 17 15 39 39 H 0.97002 * 119.99606 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2188 0.0005 5 6 3.5401 1.2777 -0.0006 6 6 4.2763 0.6199 0.9813 7 6 5.6565 0.6956 0.9770 8 6 6.3150 1.4230 0.0014 9 6 5.6008 2.0833 -0.9807 10 6 4.2099 2.0185 -0.9925 11 6 3.4414 2.7226 -2.0411 12 8 2.2385 2.5728 -2.1163 13 8 4.0754 3.5302 -2.9131 14 6 3.2577 4.1885 -3.9162 15 6 4.1329 5.0445 -4.7950 16 8 5.3282 5.0944 -4.5958 17 7 3.5873 5.7546 -5.8022 18 6 4.4380 6.5873 -6.6562 19 6 3.5892 7.2714 -7.6966 20 1 2.5227 7.1026 -7.7197 21 6 4.1742 8.1121 -8.6196 22 7 3.4334 8.7088 -9.5279 23 14 6.0189 8.4036 -8.5802 24 1 6.6974 7.3976 -9.4362 25 1 6.3156 9.7669 -9.0885 26 1 6.5102 8.2779 -7.1844 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 3.7690 0.0507 1.7462 31 1 6.2242 0.1879 1.7427 32 1 7.3937 1.4757 0.0077 33 1 6.1215 2.6488 -1.7393 34 1 2.7547 3.4373 -4.5252 35 1 2.5137 4.8151 -3.4244 36 1 2.6312 5.7150 -5.9613 37 1 4.9406 7.3382 -6.0467 38 1 5.1823 5.9612 -7.1484 39 1 3.8450 9.3006 -10.1770 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728153894.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:11 Heat of formation + Delta-G solvation = -167.129017 kcal Electronic energy + Delta-G solvation = -25834.972563 eV Core-core repulsion = 21708.683344 eV Total energy + Delta-G solvation = -4126.289219 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.26601 -40.23576 -39.15772 -38.65171 -36.72292 -36.23385 -34.39248 -32.45419 -32.10059 -32.02916 -29.50088 -28.07548 -27.23458 -24.98930 -23.95636 -22.35067 -21.70255 -20.81485 -20.14146 -18.68433 -17.97829 -17.58158 -17.24654 -16.77214 -16.70040 -16.58486 -15.99031 -15.44803 -15.28667 -15.00947 -14.80643 -14.69312 -14.08001 -13.87020 -13.60347 -13.30368 -13.22409 -12.81879 -12.75282 -12.47762 -12.38671 -12.23322 -12.08533 -11.96069 -11.09679 -11.06110 -10.85738 -10.81167 -10.75689 -10.53191 -10.01238 -9.60978 -9.57027 -9.55452 -9.37381 -8.82853 -8.28760 -6.24911 -4.28062 0.05844 0.60809 2.02207 2.17536 2.24848 2.44078 3.00397 3.24521 3.26520 3.31372 3.39069 3.77838 4.21035 4.30043 4.36347 4.40877 4.48935 4.76924 4.83600 4.87194 4.96712 4.99642 5.09561 5.10802 5.15879 5.21454 5.28926 5.38784 5.63836 5.67409 5.84583 6.08734 6.16074 6.21737 6.71407 6.99504 7.07327 7.30433 7.45508 7.55705 8.03250 8.39910 8.66192 8.78252 9.33990 10.86880 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.021165 B = 0.002481 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.607437 B =11283.925080 C =12481.028810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.507 3.493 4 O -0.465 6.465 5 C -0.052 4.052 6 C -0.087 4.087 7 C -0.090 4.090 8 C -0.106 4.106 9 C -0.060 4.060 10 C -0.076 4.076 11 C 0.498 3.502 12 O -0.483 6.483 13 O -0.323 6.323 14 C 0.051 3.949 15 C 0.504 3.496 16 O -0.537 6.537 17 N -0.699 5.699 18 C 0.222 3.778 19 C -0.546 4.546 20 H 0.081 0.919 21 C 0.078 3.922 22 N -0.891 5.891 23 Si 0.877 3.123 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.260 1.260 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.155 0.845 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.399 0.601 37 H 0.028 0.972 38 H 0.024 0.976 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.720 -20.312 23.074 30.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.272 6.272 3 C 0.348 3.652 4 O -0.350 6.350 5 C -0.054 4.054 6 C -0.105 4.105 7 C -0.108 4.108 8 C -0.124 4.124 9 C -0.078 4.078 10 C -0.078 4.078 11 C 0.341 3.659 12 O -0.371 6.371 13 O -0.238 6.238 14 C -0.026 4.026 15 C 0.287 3.713 16 O -0.415 6.415 17 N -0.349 5.349 18 C 0.101 3.899 19 C -0.584 4.584 20 H 0.099 0.901 21 C -0.126 4.126 22 N -0.528 5.528 23 Si 0.703 3.297 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.185 1.185 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.172 0.828 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.233 0.767 37 H 0.046 0.954 38 H 0.042 0.958 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.966 -19.825 22.968 30.356 hybrid contribution -0.006 0.346 -0.335 0.482 sum 0.960 -19.479 22.633 29.876 Atomic orbital electron populations 1.23292 0.75755 1.03651 1.02923 1.86562 1.23750 1.32385 1.84541 1.20896 0.88557 0.82115 0.73617 1.90896 1.65927 1.35808 1.42343 1.19010 0.89983 0.99323 0.97037 1.21225 0.94196 0.97374 0.97747 1.21435 0.93844 0.97291 0.98248 1.21474 1.01161 0.95954 0.93816 1.21657 0.91804 0.96138 0.98200 1.18970 0.93835 1.00133 0.94835 1.21088 0.86180 0.77670 0.80914 1.90929 1.14698 1.60927 1.70551 1.86552 1.40747 1.55945 1.40551 1.22865 0.93193 0.97020 0.89568 1.19878 0.88585 0.81108 0.81754 1.90689 1.15146 1.64851 1.70779 1.46066 1.12383 1.45821 1.30640 1.19559 0.91202 0.89676 0.89485 1.21065 0.96060 1.28013 1.13266 0.90119 1.24793 0.98537 0.94705 0.94553 1.69879 1.35991 1.29631 1.17254 0.86811 0.85311 0.77988 0.79554 1.19791 1.20836 1.18457 0.87995 0.91883 0.91429 0.83990 0.84224 0.84089 0.82759 0.88157 0.88050 0.76657 0.95398 0.95850 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.37 16 2 O -0.36 -3.89 10.58 -40.51 -0.43 -4.32 16 3 C 0.51 6.61 6.05 34.66 0.21 6.82 16 4 O -0.47 -7.52 14.49 -27.23 -0.39 -7.91 16 5 C -0.05 -0.58 5.79 -104.64 -0.61 -1.19 16 6 C -0.09 -0.64 9.78 -39.21 -0.38 -1.03 16 7 C -0.09 -0.50 10.03 -39.53 -0.40 -0.90 16 8 C -0.11 -0.69 10.03 -39.54 -0.40 -1.09 16 9 C -0.06 -0.57 9.61 -39.21 -0.38 -0.95 16 10 C -0.08 -0.93 5.90 -104.64 -0.62 -1.54 16 11 C 0.50 7.48 7.79 34.66 0.27 7.75 16 12 O -0.48 -8.19 12.77 -27.23 -0.35 -8.54 16 13 O -0.32 -5.08 9.03 -47.19 -0.43 -5.50 16 14 C 0.05 0.77 5.95 36.00 0.21 0.99 16 15 C 0.50 9.61 7.91 -10.99 -0.09 9.52 16 16 O -0.54 -12.18 16.50 -14.10 -0.23 -12.42 16 17 N -0.70 -13.91 5.55 -61.47 -0.34 -14.25 16 18 C 0.22 5.38 4.50 -5.19 -0.02 5.36 16 19 C -0.55 -14.81 9.83 -34.44 -0.34 -15.14 16 20 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 21 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 22 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 23 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 27 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 31 H 0.14 0.34 8.06 -52.49 -0.42 -0.09 16 32 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 33 H 0.15 1.48 7.62 -52.49 -0.40 1.08 16 34 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.40 6.91 8.32 -40.82 -0.34 6.57 16 37 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 38 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 352.00 15.07 5.30 5.30 Total: -1.00 -36.38 352.00 -6.79 -43.17 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -4.47 Total: 1.40 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: -1.56 Total: 12.07 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.43 Total: -39.75 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -1.83 Total: -38.69 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.38 -6.79 -43.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728153894.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.958 kcal (2) G-P(sol) polarization free energy of solvation -36.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds